data_7Q7Z # _entry.id 7Q7Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.384 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Q7Z pdb_00007q7z 10.2210/pdb7q7z/pdb WWPDB D_1292118323 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-23 2 'Structure model' 1 1 2022-03-30 3 'Structure model' 1 2 2022-05-11 4 'Structure model' 1 3 2024-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Q7Z _pdbx_database_status.recvd_initial_deposition_date 2021-11-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 7Q7X _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email claudia.hoebartner@uni-wuerzburg.de _pdbx_contact_author.name_first Hoebartner _pdbx_contact_author.name_last Claudia _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4548-2299 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mieczkowski, M.' 1 ? 'Hoebartner, C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 547 _citation.page_last 555 _citation.title 'Structure and mechanism of the methyltransferase ribozyme MTR1.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-022-00976-x _citation.pdbx_database_id_PubMed 35301481 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scheitl, C.P.M.' 1 ? primary 'Mieczkowski, M.' 2 ? primary 'Schindelin, H.' 3 ? primary 'Hobartner, C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA 1' 4542.855 2 ? ? ? ? 2 polymer syn 'RNA 2' 7641.636 2 ? ? ? ? 3 polymer syn 'RNA 3' 7755.703 2 ? ? ? GCUGGGACAACUAGACAUACAGUG 4 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 5 non-polymer syn GUANINE 151.126 2 ? ? ? ? 6 water nat water 18.015 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'CCACUG(9SI)GAGCUUC' CCACUGXGAGCUUC A,D ? 2 polyribonucleotide no no GGAAGCUCUGACCGACCCCCAGCC GGAAGCUCUGACCGACCCCCAGCC B,E ? 3 polyribonucleotide no no GCUGGGACAACUAGACAUACAGUG GCUGGGACAACUAGACAUACAGUG C,F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 GUANINE GUN 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 A n 1 4 C n 1 5 U n 1 6 G n 1 7 9SI n 1 8 G n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 U n 1 14 C n 2 1 G n 2 2 G n 2 3 A n 2 4 A n 2 5 G n 2 6 C n 2 7 U n 2 8 C n 2 9 U n 2 10 G n 2 11 A n 2 12 C n 2 13 C n 2 14 G n 2 15 A n 2 16 C n 2 17 C n 2 18 C n 2 19 C n 2 20 C n 2 21 A n 2 22 G n 2 23 C n 2 24 C n 3 1 G n 3 2 C n 3 3 U n 3 4 G n 3 5 G n 3 6 G n 3 7 A n 3 8 C n 3 9 A n 3 10 A n 3 11 C n 3 12 U n 3 13 A n 3 14 G n 3 15 A n 3 16 C n 3 17 A n 3 18 U n 3 19 A n 3 20 C n 3 21 A n 3 22 G n 3 23 U n 3 24 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 14 'synthetic construct' ? 32630 ? 2 1 sample 1 24 'synthetic construct' ? 32630 ? 3 1 sample 1 24 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9SI 'RNA linking' n ;[(2R,3S,4R,5R)-5-[1-[[4-(aminomethyl)phenyl]methyl]-6-azanyl-purin-1-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate ; 1-benzylamine-adenosine 'C18 H24 N6 O7 P 1' 467.393 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 9SI 7 7 7 9SI BN2 A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 A 3 3 3 A A B . n B 2 4 A 4 4 4 A A B . n B 2 5 G 5 5 5 G G B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 C 8 8 8 C C B . n B 2 9 U 9 9 9 U U B . n B 2 10 G 10 10 10 G G B . n B 2 11 A 11 11 11 A A B . n B 2 12 C 12 12 12 C C B . n B 2 13 C 13 13 13 C C B . n B 2 14 G 14 14 14 G G B . n B 2 15 A 15 15 15 A A B . n B 2 16 C 16 16 16 C C B . n B 2 17 C 17 17 17 C C B . n B 2 18 C 18 18 18 C C B . n B 2 19 C 19 19 19 C C B . n B 2 20 C 20 20 20 C C B . n B 2 21 A 21 21 21 A A B . n B 2 22 G 22 22 22 G G B . n B 2 23 C 23 23 23 C C B . n B 2 24 C 24 24 24 C C B . n C 3 1 G 1 25 25 G G C . n C 3 2 C 2 26 26 C C C . n C 3 3 U 3 27 27 U U C . n C 3 4 G 4 28 28 G G C . n C 3 5 G 5 29 29 G G C . n C 3 6 G 6 30 30 G G C . n C 3 7 A 7 31 31 A A C . n C 3 8 C 8 32 32 C C C . n C 3 9 A 9 33 33 A A C . n C 3 10 A 10 34 34 A A C . n C 3 11 C 11 35 35 C C C . n C 3 12 U 12 36 36 U U C . n C 3 13 A 13 37 37 A A C . n C 3 14 G 14 38 38 G G C . n C 3 15 A 15 39 39 A A C . n C 3 16 C 16 40 40 C C C . n C 3 17 A 17 41 41 A A C . n C 3 18 U 18 42 42 U U C . n C 3 19 A 19 43 43 A A C . n C 3 20 C 20 44 44 C C C . n C 3 21 A 21 45 45 A A C . n C 3 22 G 22 46 46 G G C . n C 3 23 U 23 47 47 U U C . n C 3 24 G 24 48 48 G G C . n D 1 1 C 1 1 1 C C D . n D 1 2 C 2 2 2 C C D . n D 1 3 A 3 3 3 A A D . n D 1 4 C 4 4 4 C C D . n D 1 5 U 5 5 5 U U D . n D 1 6 G 6 6 6 G G D . n D 1 7 9SI 7 7 7 9SI BN2 D . n D 1 8 G 8 8 8 G G D . n D 1 9 A 9 9 9 A A D . n D 1 10 G 10 10 10 G G D . n D 1 11 C 11 11 11 C C D . n D 1 12 U 12 12 12 U U D . n D 1 13 U 13 13 13 U U D . n D 1 14 C 14 14 14 C C D . n E 2 1 G 1 1 1 G G E . n E 2 2 G 2 2 2 G G E . n E 2 3 A 3 3 3 A A E . n E 2 4 A 4 4 4 A A E . n E 2 5 G 5 5 5 G G E . n E 2 6 C 6 6 6 C C E . n E 2 7 U 7 7 7 U U E . n E 2 8 C 8 8 8 C C E . n E 2 9 U 9 9 9 U U E . n E 2 10 G 10 10 10 G G E . n E 2 11 A 11 11 11 A A E . n E 2 12 C 12 12 12 C C E . n E 2 13 C 13 13 13 C C E . n E 2 14 G 14 14 14 G G E . n E 2 15 A 15 15 15 A A E . n E 2 16 C 16 16 16 C C E . n E 2 17 C 17 17 17 C C E . n E 2 18 C 18 18 18 C C E . n E 2 19 C 19 19 19 C C E . n E 2 20 C 20 20 20 C C E . n E 2 21 A 21 21 21 A A E . n E 2 22 G 22 22 22 G G E . n E 2 23 C 23 23 23 C C E . n E 2 24 C 24 24 24 C C E . n F 3 1 G 1 25 25 G G F . n F 3 2 C 2 26 26 C C F . n F 3 3 U 3 27 27 U U F . n F 3 4 G 4 28 28 G G F . n F 3 5 G 5 29 29 G G F . n F 3 6 G 6 30 30 G G F . n F 3 7 A 7 31 31 A A F . n F 3 8 C 8 32 32 C C F . n F 3 9 A 9 33 33 A A F . n F 3 10 A 10 34 34 A A F . n F 3 11 C 11 35 35 C C F . n F 3 12 U 12 36 36 U U F . n F 3 13 A 13 37 37 A A F . n F 3 14 G 14 38 38 G G F . n F 3 15 A 15 39 39 A A F . n F 3 16 C 16 40 40 C C F . n F 3 17 A 17 41 41 A A F . n F 3 18 U 18 42 42 U U F . n F 3 19 A 19 43 43 A A F . n F 3 20 C 20 44 44 C C F . n F 3 21 A 21 45 45 A A F . n F 3 22 G 22 46 46 G G F . n F 3 23 U 23 47 47 U U F . n F 3 24 G 24 48 48 G G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG 1 101 1 MG MO6 B . H 5 GUN 1 101 1 GUN GUN C . I 4 MG 1 102 1 MG MG C . J 5 GUN 1 101 2 GUN GUN F . K 4 MG 1 102 3 MG MG F . L 6 HOH 1 201 1 HOH MO6 B . L 6 HOH 2 202 1 HOH MO6 B . M 6 HOH 1 201 1 HOH MO6 C . N 6 HOH 1 101 1 HOH MO6 E . O 6 HOH 1 201 1 HOH MO6 F . O 6 HOH 2 202 1 HOH MO6 F . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.1_4122: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7Q7Z _cell.details ? _cell.formula_units_Z ? _cell.length_a 117.861 _cell.length_a_esd ? _cell.length_b 117.861 _cell.length_b_esd ? _cell.length_c 83.275 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Q7Z _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.63 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '36-42% MPD, 50mM MES pH 6.4-6.7, 100mM NaCl, 100mM LiCl, 10mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-03-30 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, DESY BEAMLINE P11' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0332 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline P11 _diffrn_source.pdbx_synchrotron_site 'PETRA III, DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7Q7Z _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.26 _reflns.d_resolution_low 44.54 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9584 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.71 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 15.4 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.26 _reflns_shell.d_res_low 3.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 937 _reflns_shell.percent_possible_all 98.83 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.236 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7Q7Z _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.26 _refine.ls_d_res_low 44.54 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9568 _refine.ls_number_reflns_R_free 521 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.78 _refine.ls_percent_reflns_R_free 5.45 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2132 _refine.ls_R_factor_R_free 0.2645 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2102 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7Q7X _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.66 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.50 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2640 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2670 _refine_hist.d_res_high 3.26 _refine_hist.d_res_low 44.54 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.001 ? 2978 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.303 ? 4629 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.061 ? 1470 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 612 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.001 ? 128 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.26 3.59 . . 129 2195 99.00 . . . 0.3927 . 0.3524 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.59 4.11 . . 125 2218 100.00 . . . 0.2796 . 0.2701 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.11 5.18 . . 125 2260 100.00 . . . 0.2788 . 0.2588 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.18 44.54 . . 142 2374 100.00 . . . 0.2423 . 0.1693 . . . . . . . . . . . # _struct.entry_id 7Q7Z _struct.title 'Crystal structure of the methyltransferase-ribozyme 1 (with 1-benzylamine-adenosine)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Q7Z _struct_keywords.text 'MTR1, methyltransferase ribozyme, ribozyme, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 4 ? J N N 5 ? K N N 4 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7Q7Z 7Q7Z ? 1 ? 1 2 PDB 7Q7Z 7Q7Z ? 2 ? 1 3 PDB 7Q7Z 7Q7Z ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Q7Z A 1 ? 14 ? 7Q7Z 1 ? 14 ? 1 14 2 2 7Q7Z B 1 ? 24 ? 7Q7Z 1 ? 24 ? 1 24 3 3 7Q7Z C 1 ? 24 ? 7Q7Z 25 ? 48 ? 25 48 4 1 7Q7Z D 1 ? 14 ? 7Q7Z 1 ? 14 ? 1 14 5 2 7Q7Z E 1 ? 24 ? 7Q7Z 1 ? 24 ? 1 24 6 3 7Q7Z F 1 ? 24 ? 7Q7Z 25 ? 48 ? 25 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4740 ? 1 MORE -8 ? 1 'SSA (A^2)' 10570 ? 2 'ABSA (A^2)' 4690 ? 2 MORE -8 ? 2 'SSA (A^2)' 10720 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I,L,M 2 1 D,E,F,J,K,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 6 "O3'" ? ? ? 1_555 A 9SI 7 P ? ? A G 6 A 9SI 7 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A 9SI 7 "O3'" ? ? ? 1_555 A G 8 P ? ? A 9SI 7 A G 8 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? D G 6 "O3'" ? ? ? 1_555 D 9SI 7 P ? ? D G 6 D 9SI 7 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? D 9SI 7 "O3'" ? ? ? 1_555 D G 8 P ? ? D 9SI 7 D G 8 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 101 B HOH 201 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc2 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? B MG 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc3 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 C HOH 201 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc4 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 E HOH 101 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc5 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 F HOH 201 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc6 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 F HOH 202 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc7 metalc ? ? C C 8 O2 ? ? ? 1_555 I MG . MG ? ? C C 32 C MG 102 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc8 metalc ? ? F C 8 O2 ? ? ? 1_555 K MG . MG ? ? F C 32 F MG 102 1_555 ? ? ? ? ? ? ? 2.268 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 C G 24 N1 ? ? A C 2 C G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 C G 24 O6 ? ? A C 2 C G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 C G 24 N2 ? ? A C 2 C G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 C U 23 N3 ? ? A A 3 C U 47 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog5 hydrog ? ? A C 4 N3 ? ? ? 1_555 C G 22 N1 ? ? A C 4 C G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N4 ? ? ? 1_555 C G 22 O6 ? ? A C 4 C G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 O2 ? ? ? 1_555 C G 22 N2 ? ? A C 4 C G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 N3 ? ? ? 1_555 C A 21 N1 ? ? A U 5 C A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 C A 21 N6 ? ? A U 5 C A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N1 ? ? ? 1_555 C C 20 N3 ? ? A G 6 C C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N2 ? ? ? 1_555 C C 20 O2 ? ? A G 6 C C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 O6 ? ? ? 1_555 C C 20 N4 ? ? A G 6 C C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 8 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 8 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 8 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 9 B U 7 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog17 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 10 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 10 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 10 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 11 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 11 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 11 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 12 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 12 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 13 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 13 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 14 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 14 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 14 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B U 9 N3 ? ? ? 1_555 C A 10 N7 ? ? B U 9 C A 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog31 hydrog ? ? B U 9 O2 ? ? ? 1_555 C A 10 N6 ? ? B U 9 C A 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog32 hydrog ? ? B A 11 N6 ? ? ? 1_555 C A 19 N3 ? ? B A 11 C A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog33 hydrog ? ? B C 13 N3 ? ? ? 1_555 C G 14 N1 ? ? B C 13 C G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 13 N4 ? ? ? 1_555 C G 14 O6 ? ? B C 13 C G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 13 O2 ? ? ? 1_555 C G 14 N2 ? ? B C 13 C G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 14 N1 ? ? ? 1_555 C C 11 N3 ? ? B G 14 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 14 N2 ? ? ? 1_555 C C 11 O2 ? ? B G 14 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 14 O6 ? ? ? 1_555 C C 11 N4 ? ? B G 14 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 18 O2 ? ? ? 1_555 C G 6 N2 ? ? B C 18 C G 30 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog40 hydrog ? ? B C 19 N3 ? ? ? 1_555 C G 5 N2 ? ? B C 19 C G 29 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog41 hydrog ? ? B C 20 N3 ? ? ? 1_555 C G 4 N1 ? ? B C 20 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B C 20 N4 ? ? ? 1_555 C G 4 O6 ? ? B C 20 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 20 O2 ? ? ? 1_555 C G 4 N2 ? ? B C 20 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B A 21 N1 ? ? ? 1_555 C U 3 N3 ? ? B A 21 C U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B A 21 N6 ? ? ? 1_555 C U 3 O4 ? ? B A 21 C U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 22 N1 ? ? ? 1_555 C C 2 N3 ? ? B G 22 C C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 22 N2 ? ? ? 1_555 C C 2 O2 ? ? B G 22 C C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 22 O6 ? ? ? 1_555 C C 2 N4 ? ? B G 22 C C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 23 N3 ? ? ? 1_555 C G 1 N1 ? ? B C 23 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 23 N4 ? ? ? 1_555 C G 1 O6 ? ? B C 23 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 23 O2 ? ? ? 1_555 C G 1 N2 ? ? B C 23 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C A 13 N3 ? ? ? 1_555 C A 19 N6 ? ? C A 37 C A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog53 hydrog ? ? D C 2 N3 ? ? ? 1_555 F G 24 N1 ? ? D C 2 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D C 2 N4 ? ? ? 1_555 F G 24 O6 ? ? D C 2 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D C 2 O2 ? ? ? 1_555 F G 24 N2 ? ? D C 2 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D A 3 N1 ? ? ? 1_555 F U 23 N3 ? ? D A 3 F U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D A 3 N6 ? ? ? 1_555 F U 23 O4 ? ? D A 3 F U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D C 4 N3 ? ? ? 1_555 F G 22 N1 ? ? D C 4 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D C 4 N4 ? ? ? 1_555 F G 22 O6 ? ? D C 4 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D C 4 O2 ? ? ? 1_555 F G 22 N2 ? ? D C 4 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? D U 5 N3 ? ? ? 1_555 F A 21 N1 ? ? D U 5 F A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? D U 5 O4 ? ? ? 1_555 F A 21 N6 ? ? D U 5 F A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? D G 6 N1 ? ? ? 1_555 F C 20 N3 ? ? D G 6 F C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? D G 6 N2 ? ? ? 1_555 F C 20 O2 ? ? D G 6 F C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? D G 6 O6 ? ? ? 1_555 F C 20 N4 ? ? D G 6 F C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? D G 8 N1 ? ? ? 1_555 E C 8 N3 ? ? D G 8 E C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? D G 8 N2 ? ? ? 1_555 E C 8 O2 ? ? D G 8 E C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? D G 8 O6 ? ? ? 1_555 E C 8 N4 ? ? D G 8 E C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? D A 9 N1 ? ? ? 1_555 E U 7 N3 ? ? D A 9 E U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? D A 9 N6 ? ? ? 1_555 E U 7 O4 ? ? D A 9 E U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? D G 10 N2 ? ? ? 1_555 E C 6 N3 ? ? D G 10 E C 6 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog72 hydrog ? ? D C 11 N3 ? ? ? 1_555 E G 5 N1 ? ? D C 11 E G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? D C 11 N4 ? ? ? 1_555 E G 5 O6 ? ? D C 11 E G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? D C 11 O2 ? ? ? 1_555 E G 5 N2 ? ? D C 11 E G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? D U 12 N3 ? ? ? 1_555 E A 4 N1 ? ? D U 12 E A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? D U 12 O4 ? ? ? 1_555 E A 4 N6 ? ? D U 12 E A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? D U 13 N3 ? ? ? 1_555 E A 3 N1 ? ? D U 13 E A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? D U 13 O4 ? ? ? 1_555 E A 3 N6 ? ? D U 13 E A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? D C 14 N4 ? ? ? 1_555 E G 2 O6 ? ? D C 14 E G 2 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog80 hydrog ? ? D C 14 N3 ? ? ? 1_555 E A 3 N6 ? ? D C 14 E A 3 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog81 hydrog ? ? E U 9 N3 ? ? ? 1_555 F A 10 N7 ? ? E U 9 F A 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog82 hydrog ? ? E U 9 O2 ? ? ? 1_555 F A 10 N6 ? ? E U 9 F A 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog83 hydrog ? ? E A 11 N6 ? ? ? 1_555 F A 19 N3 ? ? E A 11 F A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog84 hydrog ? ? E C 13 N3 ? ? ? 1_555 F G 14 N1 ? ? E C 13 F G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E C 13 N4 ? ? ? 1_555 F G 14 O6 ? ? E C 13 F G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E C 13 O2 ? ? ? 1_555 F G 14 N2 ? ? E C 13 F G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E G 14 N1 ? ? ? 1_555 F C 11 N3 ? ? E G 14 F C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E G 14 N2 ? ? ? 1_555 F C 11 O2 ? ? E G 14 F C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E G 14 O6 ? ? ? 1_555 F C 11 N4 ? ? E G 14 F C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E C 17 N4 ? ? ? 1_555 F A 7 N1 ? ? E C 17 F A 31 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog91 hydrog ? ? E C 18 N3 ? ? ? 1_555 F G 6 N1 ? ? E C 18 F G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? E C 18 N4 ? ? ? 1_555 F G 6 O6 ? ? E C 18 F G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? E C 18 O2 ? ? ? 1_555 F G 6 N2 ? ? E C 18 F G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? E C 19 N3 ? ? ? 1_555 F G 5 N2 ? ? E C 19 F G 29 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog95 hydrog ? ? E C 20 N3 ? ? ? 1_555 F G 4 N2 ? ? E C 20 F G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog96 hydrog ? ? E G 22 O6 ? ? ? 1_555 F G 1 N1 ? ? E G 22 F G 25 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog97 hydrog ? ? E G 22 O6 ? ? ? 1_555 F C 2 N4 ? ? E G 22 F C 26 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog98 hydrog ? ? E C 23 N3 ? ? ? 1_555 F G 1 N1 ? ? E C 23 F G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? E C 23 N4 ? ? ? 1_555 F G 1 O6 ? ? E C 23 F G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? E C 23 O2 ? ? ? 1_555 F G 1 N2 ? ? E C 23 F G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? L HOH . ? B HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? L HOH . ? B HOH 202 ? 1_555 90.0 ? 2 O ? L HOH . ? B HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? C HOH 201 ? 1_555 90.0 ? 3 O ? L HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? C HOH 201 ? 1_555 90.1 ? 4 O ? L HOH . ? B HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 101 ? 1_555 90.0 ? 5 O ? L HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 101 ? 1_555 179.9 ? 6 O ? M HOH . ? C HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? N HOH . ? E HOH 101 ? 1_555 89.9 ? 7 O ? L HOH . ? B HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 201 ? 1_555 90.0 ? 8 O ? L HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 201 ? 1_555 90.0 ? 9 O ? M HOH . ? C HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 201 ? 1_555 179.9 ? 10 O ? N HOH . ? E HOH 101 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 201 ? 1_555 90.1 ? 11 O ? L HOH . ? B HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 202 ? 1_555 179.9 ? 12 O ? L HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 202 ? 1_555 90.0 ? 13 O ? M HOH . ? C HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 202 ? 1_555 90.0 ? 14 O ? N HOH . ? E HOH 101 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 202 ? 1_555 90.0 ? 15 O ? O HOH . ? F HOH 201 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? F HOH 202 ? 1_555 90.0 ? # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.4042 _pdbx_refine_tls.origin_y -41.2435 _pdbx_refine_tls.origin_z -8.9227 _pdbx_refine_tls.T[1][1] 0.8298 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0257 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0935 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.7939 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0430 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 1.1314 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 3.3175 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -1.5612 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 1.0985 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 4.5979 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -1.5586 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.8780 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.3016 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.1664 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.5917 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.3397 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0860 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.5508 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0483 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0941 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.2191 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_entry_details.entry_id 7Q7Z _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 9SI C4 C Y N 1 9SI C5 C Y N 2 9SI C6 C Y N 3 9SI C1 C N N 4 9SI C2 C Y N 5 9SI C3 C Y N 6 9SI N1 N Y N 7 9SI C7 C Y N 8 9SI C9 C Y N 9 9SI C10 C Y N 10 9SI C11 C Y N 11 9SI C12 C Y N 12 9SI C13 C N N 13 9SI C8 C Y N 14 9SI "C1'" C N R 15 9SI "C2'" C N R 16 9SI "C3'" C N S 17 9SI "C4'" C N R 18 9SI "C5'" C N N 19 9SI N10 N N N 20 9SI N3 N Y N 21 9SI N6 N N N 22 9SI N7 N Y N 23 9SI N9 N Y N 24 9SI "O2'" O N N 25 9SI "O3'" O N N 26 9SI "O4'" O N N 27 9SI "O5'" O N N 28 9SI OP1 O N N 29 9SI OP2 O N N 30 9SI P P N N 31 9SI H1 H N N 32 9SI H3 H N N 33 9SI H2 H N N 34 9SI H4 H N N 35 9SI H5 H N N 36 9SI H6 H N N 37 9SI H7 H N N 38 9SI H10 H N N 39 9SI H9 H N N 40 9SI H8 H N N 41 9SI "H1'" H N N 42 9SI "H2'" H N N 43 9SI "H3'" H N N 44 9SI "H4'" H N N 45 9SI "H5'" H N N 46 9SI "H5''" H N N 47 9SI H17 H N N 48 9SI H18 H N N 49 9SI H61 H N N 50 9SI H62 H N N 51 9SI "HO2'" H N N 52 9SI "HO3'" H N N 53 9SI HOP2 H N N 54 9SI OP3 O N N 55 9SI HOP3 H N N 56 A OP3 O N N 57 A P P N N 58 A OP1 O N N 59 A OP2 O N N 60 A "O5'" O N N 61 A "C5'" C N N 62 A "C4'" C N R 63 A "O4'" O N N 64 A "C3'" C N S 65 A "O3'" O N N 66 A "C2'" C N R 67 A "O2'" O N N 68 A "C1'" C N R 69 A N9 N Y N 70 A C8 C Y N 71 A N7 N Y N 72 A C5 C Y N 73 A C6 C Y N 74 A N6 N N N 75 A N1 N Y N 76 A C2 C Y N 77 A N3 N Y N 78 A C4 C Y N 79 A HOP3 H N N 80 A HOP2 H N N 81 A "H5'" H N N 82 A "H5''" H N N 83 A "H4'" H N N 84 A "H3'" H N N 85 A "HO3'" H N N 86 A "H2'" H N N 87 A "HO2'" H N N 88 A "H1'" H N N 89 A H8 H N N 90 A H61 H N N 91 A H62 H N N 92 A H2 H N N 93 C OP3 O N N 94 C P P N N 95 C OP1 O N N 96 C OP2 O N N 97 C "O5'" O N N 98 C "C5'" C N N 99 C "C4'" C N R 100 C "O4'" O N N 101 C "C3'" C N S 102 C "O3'" O N N 103 C "C2'" C N R 104 C "O2'" O N N 105 C "C1'" C N R 106 C N1 N N N 107 C C2 C N N 108 C O2 O N N 109 C N3 N N N 110 C C4 C N N 111 C N4 N N N 112 C C5 C N N 113 C C6 C N N 114 C HOP3 H N N 115 C HOP2 H N N 116 C "H5'" H N N 117 C "H5''" H N N 118 C "H4'" H N N 119 C "H3'" H N N 120 C "HO3'" H N N 121 C "H2'" H N N 122 C "HO2'" H N N 123 C "H1'" H N N 124 C H41 H N N 125 C H42 H N N 126 C H5 H N N 127 C H6 H N N 128 G OP3 O N N 129 G P P N N 130 G OP1 O N N 131 G OP2 O N N 132 G "O5'" O N N 133 G "C5'" C N N 134 G "C4'" C N R 135 G "O4'" O N N 136 G "C3'" C N S 137 G "O3'" O N N 138 G "C2'" C N R 139 G "O2'" O N N 140 G "C1'" C N R 141 G N9 N Y N 142 G C8 C Y N 143 G N7 N Y N 144 G C5 C Y N 145 G C6 C N N 146 G O6 O N N 147 G N1 N N N 148 G C2 C N N 149 G N2 N N N 150 G N3 N N N 151 G C4 C Y N 152 G HOP3 H N N 153 G HOP2 H N N 154 G "H5'" H N N 155 G "H5''" H N N 156 G "H4'" H N N 157 G "H3'" H N N 158 G "HO3'" H N N 159 G "H2'" H N N 160 G "HO2'" H N N 161 G "H1'" H N N 162 G H8 H N N 163 G H1 H N N 164 G H21 H N N 165 G H22 H N N 166 GUN N9 N Y N 167 GUN C8 C Y N 168 GUN N7 N Y N 169 GUN C5 C Y N 170 GUN C6 C N N 171 GUN O6 O N N 172 GUN N1 N N N 173 GUN C2 C N N 174 GUN N2 N N N 175 GUN N3 N N N 176 GUN C4 C Y N 177 GUN HN9 H N N 178 GUN H8 H N N 179 GUN HN1 H N N 180 GUN HN21 H N N 181 GUN HN22 H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 MG MG MG N N 186 U OP3 O N N 187 U P P N N 188 U OP1 O N N 189 U OP2 O N N 190 U "O5'" O N N 191 U "C5'" C N N 192 U "C4'" C N R 193 U "O4'" O N N 194 U "C3'" C N S 195 U "O3'" O N N 196 U "C2'" C N R 197 U "O2'" O N N 198 U "C1'" C N R 199 U N1 N N N 200 U C2 C N N 201 U O2 O N N 202 U N3 N N N 203 U C4 C N N 204 U O4 O N N 205 U C5 C N N 206 U C6 C N N 207 U HOP3 H N N 208 U HOP2 H N N 209 U "H5'" H N N 210 U "H5''" H N N 211 U "H4'" H N N 212 U "H3'" H N N 213 U "HO3'" H N N 214 U "H2'" H N N 215 U "HO2'" H N N 216 U "H1'" H N N 217 U H3 H N N 218 U H5 H N N 219 U H6 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9SI OP1 P doub N N 1 9SI N6 C6 sing N N 2 9SI N7 C8 doub Y N 3 9SI N7 C5 sing Y N 4 9SI P OP2 sing N N 5 9SI P "O5'" sing N N 6 9SI C8 N9 sing Y N 7 9SI C5 C6 doub Y N 8 9SI C5 C4 sing Y N 9 9SI C6 N1 sing Y N 10 9SI "O5'" "C5'" sing N N 11 9SI "C5'" "C4'" sing N N 12 9SI N9 C4 sing Y N 13 9SI N9 "C1'" sing N N 14 9SI N1 C1 sing N N 15 9SI N1 C2 doub Y N 16 9SI C1 C3 sing N N 17 9SI C4 N3 doub Y N 18 9SI "O4'" "C4'" sing N N 19 9SI "O4'" "C1'" sing N N 20 9SI "C4'" "C3'" sing N N 21 9SI "C2'" "C1'" sing N N 22 9SI "C2'" "C3'" sing N N 23 9SI "C2'" "O2'" sing N N 24 9SI C2 N3 sing Y N 25 9SI "C3'" "O3'" sing N N 26 9SI C3 C7 doub Y N 27 9SI C3 C12 sing Y N 28 9SI C7 C9 sing Y N 29 9SI C12 C11 doub Y N 30 9SI C9 C10 doub Y N 31 9SI C11 C10 sing Y N 32 9SI C10 C13 sing N N 33 9SI C13 N10 sing N N 34 9SI C1 H1 sing N N 35 9SI C1 H3 sing N N 36 9SI C2 H2 sing N N 37 9SI C7 H4 sing N N 38 9SI C9 H5 sing N N 39 9SI C11 H6 sing N N 40 9SI C12 H7 sing N N 41 9SI C13 H10 sing N N 42 9SI C13 H9 sing N N 43 9SI C8 H8 sing N N 44 9SI "C1'" "H1'" sing N N 45 9SI "C2'" "H2'" sing N N 46 9SI "C3'" "H3'" sing N N 47 9SI "C4'" "H4'" sing N N 48 9SI "C5'" "H5'" sing N N 49 9SI "C5'" "H5''" sing N N 50 9SI N10 H17 sing N N 51 9SI N10 H18 sing N N 52 9SI N6 H61 sing N N 53 9SI N6 H62 sing N N 54 9SI "O2'" "HO2'" sing N N 55 9SI "O3'" "HO3'" sing N N 56 9SI OP2 HOP2 sing N N 57 9SI OP3 P sing N N 58 9SI OP3 HOP3 sing N N 59 A OP3 P sing N N 60 A OP3 HOP3 sing N N 61 A P OP1 doub N N 62 A P OP2 sing N N 63 A P "O5'" sing N N 64 A OP2 HOP2 sing N N 65 A "O5'" "C5'" sing N N 66 A "C5'" "C4'" sing N N 67 A "C5'" "H5'" sing N N 68 A "C5'" "H5''" sing N N 69 A "C4'" "O4'" sing N N 70 A "C4'" "C3'" sing N N 71 A "C4'" "H4'" sing N N 72 A "O4'" "C1'" sing N N 73 A "C3'" "O3'" sing N N 74 A "C3'" "C2'" sing N N 75 A "C3'" "H3'" sing N N 76 A "O3'" "HO3'" sing N N 77 A "C2'" "O2'" sing N N 78 A "C2'" "C1'" sing N N 79 A "C2'" "H2'" sing N N 80 A "O2'" "HO2'" sing N N 81 A "C1'" N9 sing N N 82 A "C1'" "H1'" sing N N 83 A N9 C8 sing Y N 84 A N9 C4 sing Y N 85 A C8 N7 doub Y N 86 A C8 H8 sing N N 87 A N7 C5 sing Y N 88 A C5 C6 sing Y N 89 A C5 C4 doub Y N 90 A C6 N6 sing N N 91 A C6 N1 doub Y N 92 A N6 H61 sing N N 93 A N6 H62 sing N N 94 A N1 C2 sing Y N 95 A C2 N3 doub Y N 96 A C2 H2 sing N N 97 A N3 C4 sing Y N 98 C OP3 P sing N N 99 C OP3 HOP3 sing N N 100 C P OP1 doub N N 101 C P OP2 sing N N 102 C P "O5'" sing N N 103 C OP2 HOP2 sing N N 104 C "O5'" "C5'" sing N N 105 C "C5'" "C4'" sing N N 106 C "C5'" "H5'" sing N N 107 C "C5'" "H5''" sing N N 108 C "C4'" "O4'" sing N N 109 C "C4'" "C3'" sing N N 110 C "C4'" "H4'" sing N N 111 C "O4'" "C1'" sing N N 112 C "C3'" "O3'" sing N N 113 C "C3'" "C2'" sing N N 114 C "C3'" "H3'" sing N N 115 C "O3'" "HO3'" sing N N 116 C "C2'" "O2'" sing N N 117 C "C2'" "C1'" sing N N 118 C "C2'" "H2'" sing N N 119 C "O2'" "HO2'" sing N N 120 C "C1'" N1 sing N N 121 C "C1'" "H1'" sing N N 122 C N1 C2 sing N N 123 C N1 C6 sing N N 124 C C2 O2 doub N N 125 C C2 N3 sing N N 126 C N3 C4 doub N N 127 C C4 N4 sing N N 128 C C4 C5 sing N N 129 C N4 H41 sing N N 130 C N4 H42 sing N N 131 C C5 C6 doub N N 132 C C5 H5 sing N N 133 C C6 H6 sing N N 134 G OP3 P sing N N 135 G OP3 HOP3 sing N N 136 G P OP1 doub N N 137 G P OP2 sing N N 138 G P "O5'" sing N N 139 G OP2 HOP2 sing N N 140 G "O5'" "C5'" sing N N 141 G "C5'" "C4'" sing N N 142 G "C5'" "H5'" sing N N 143 G "C5'" "H5''" sing N N 144 G "C4'" "O4'" sing N N 145 G "C4'" "C3'" sing N N 146 G "C4'" "H4'" sing N N 147 G "O4'" "C1'" sing N N 148 G "C3'" "O3'" sing N N 149 G "C3'" "C2'" sing N N 150 G "C3'" "H3'" sing N N 151 G "O3'" "HO3'" sing N N 152 G "C2'" "O2'" sing N N 153 G "C2'" "C1'" sing N N 154 G "C2'" "H2'" sing N N 155 G "O2'" "HO2'" sing N N 156 G "C1'" N9 sing N N 157 G "C1'" "H1'" sing N N 158 G N9 C8 sing Y N 159 G N9 C4 sing Y N 160 G C8 N7 doub Y N 161 G C8 H8 sing N N 162 G N7 C5 sing Y N 163 G C5 C6 sing N N 164 G C5 C4 doub Y N 165 G C6 O6 doub N N 166 G C6 N1 sing N N 167 G N1 C2 sing N N 168 G N1 H1 sing N N 169 G C2 N2 sing N N 170 G C2 N3 doub N N 171 G N2 H21 sing N N 172 G N2 H22 sing N N 173 G N3 C4 sing N N 174 GUN N9 C8 sing Y N 175 GUN N9 C4 sing Y N 176 GUN N9 HN9 sing N N 177 GUN C8 N7 doub Y N 178 GUN C8 H8 sing N N 179 GUN N7 C5 sing Y N 180 GUN C5 C6 sing N N 181 GUN C5 C4 doub Y N 182 GUN C6 O6 doub N N 183 GUN C6 N1 sing N N 184 GUN N1 C2 sing N N 185 GUN N1 HN1 sing N N 186 GUN C2 N2 sing N N 187 GUN C2 N3 doub N N 188 GUN N2 HN21 sing N N 189 GUN N2 HN22 sing N N 190 GUN N3 C4 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 U OP3 P sing N N 194 U OP3 HOP3 sing N N 195 U P OP1 doub N N 196 U P OP2 sing N N 197 U P "O5'" sing N N 198 U OP2 HOP2 sing N N 199 U "O5'" "C5'" sing N N 200 U "C5'" "C4'" sing N N 201 U "C5'" "H5'" sing N N 202 U "C5'" "H5''" sing N N 203 U "C4'" "O4'" sing N N 204 U "C4'" "C3'" sing N N 205 U "C4'" "H4'" sing N N 206 U "O4'" "C1'" sing N N 207 U "C3'" "O3'" sing N N 208 U "C3'" "C2'" sing N N 209 U "C3'" "H3'" sing N N 210 U "O3'" "HO3'" sing N N 211 U "C2'" "O2'" sing N N 212 U "C2'" "C1'" sing N N 213 U "C2'" "H2'" sing N N 214 U "O2'" "HO2'" sing N N 215 U "C1'" N1 sing N N 216 U "C1'" "H1'" sing N N 217 U N1 C2 sing N N 218 U N1 C6 sing N N 219 U C2 O2 doub N N 220 U C2 N3 sing N N 221 U N3 C4 sing N N 222 U N3 H3 sing N N 223 U C4 O4 doub N N 224 U C4 C5 sing N N 225 U C5 C6 doub N N 226 U C5 H5 sing N N 227 U C6 H6 sing N N 228 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7Q7Z 'double helix' 7Q7Z 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 C G 24 1_555 -1.022 0.199 -0.015 6.161 -8.984 7.640 1 A_C2:G48_C A 2 ? C 48 ? 19 1 1 A A 3 1_555 C U 23 1_555 -0.909 0.396 0.110 4.826 -10.709 7.960 2 A_A3:U47_C A 3 ? C 47 ? ? 1 1 A C 4 1_555 C G 22 1_555 -0.169 0.433 -0.172 11.433 -12.249 7.058 3 A_C4:G46_C A 4 ? C 46 ? 19 1 1 A U 5 1_555 C A 21 1_555 -0.457 0.262 -0.031 4.879 -4.761 1.118 4 A_U5:A45_C A 5 ? C 45 ? 20 1 1 A G 6 1_555 C C 20 1_555 0.081 -0.015 -0.468 -6.541 -12.460 -0.550 5 A_G6:C44_C A 6 ? C 44 ? 19 1 1 C A 13 1_555 C A 19 1_555 2.971 -3.975 1.108 -40.006 -12.827 -85.385 6 C_A37:A43_C C 37 ? C 43 ? ? 6 1 B G 2 1_555 A C 14 1_555 0.041 0.512 -0.516 -5.393 -3.105 2.264 7 B_G2:C14_A B 2 ? A 14 ? 19 1 1 B A 3 1_555 A U 13 1_555 -0.478 0.427 -0.797 -1.060 -12.852 4.138 8 B_A3:U13_A B 3 ? A 13 ? 20 1 1 B A 4 1_555 A U 12 1_555 0.663 0.327 -0.595 -4.874 -7.522 2.188 9 B_A4:U12_A B 4 ? A 12 ? 20 1 1 B G 5 1_555 A C 11 1_555 1.358 0.087 -0.949 -18.263 -15.653 -3.383 10 B_G5:C11_A B 5 ? A 11 ? 19 1 1 B C 6 1_555 A G 10 1_555 -0.349 0.253 -0.330 -0.663 -12.102 3.499 11 B_C6:G10_A B 6 ? A 10 ? 19 1 1 B U 7 1_555 A A 9 1_555 -0.724 0.698 0.382 -1.275 -9.290 0.962 12 B_U7:A9_A B 7 ? A 9 ? ? ? 1 B C 8 1_555 A G 8 1_555 0.592 -0.413 -0.437 11.406 -29.729 -14.676 13 B_C8:G8_A B 8 ? A 8 ? 19 1 1 B U 9 1_555 C A 10 1_555 4.555 -2.568 0.226 -21.469 -6.493 -99.619 14 B_U9:A34_C B 9 ? C 34 ? 24 4 1 B C 13 1_555 C G 14 1_555 0.597 -0.131 -0.227 2.237 -4.679 -6.951 15 B_C13:G38_C B 13 ? C 38 ? 19 1 1 B G 14 1_555 C C 11 1_555 -0.124 0.191 -0.764 -12.716 -1.347 7.672 16 B_G14:C35_C B 14 ? C 35 ? 19 1 1 B C 18 1_555 C G 6 1_555 0.504 0.718 -0.398 7.711 -3.569 12.267 17 B_C18:G30_C B 18 ? C 30 ? ? 1 1 B C 19 1_555 C G 5 1_555 -1.338 0.622 -0.598 3.331 -4.262 4.732 18 B_C19:G29_C B 19 ? C 29 ? ? 1 1 B C 20 1_555 C G 4 1_555 -1.042 0.614 -0.705 9.234 2.133 0.923 19 B_C20:G28_C B 20 ? C 28 ? 19 1 1 B A 21 1_555 C U 3 1_555 0.770 0.539 -0.265 -0.744 -3.609 0.010 20 B_A21:U27_C B 21 ? C 27 ? 20 1 1 B G 22 1_555 C C 2 1_555 0.596 -0.266 -0.103 -9.322 -15.617 -2.796 21 B_G22:C26_C B 22 ? C 26 ? 19 1 1 B C 23 1_555 C G 1 1_555 1.530 -0.187 0.732 -11.903 6.517 -2.941 22 B_C23:G25_C B 23 ? C 25 ? 19 1 1 D C 2 1_555 F G 24 1_555 0.072 0.004 0.525 1.807 -13.909 9.310 23 D_C2:G48_F D 2 ? F 48 ? 19 1 1 D A 3 1_555 F U 23 1_555 -0.720 0.162 0.133 2.660 -13.116 6.263 24 D_A3:U47_F D 3 ? F 47 ? 20 1 1 D C 4 1_555 F G 22 1_555 0.383 0.054 -0.212 13.537 -13.521 -0.171 25 D_C4:G46_F D 4 ? F 46 ? 19 1 1 D U 5 1_555 F A 21 1_555 -0.329 0.105 -0.160 10.033 -12.021 3.220 26 D_U5:A45_F D 5 ? F 45 ? 20 1 1 D G 6 1_555 F C 20 1_555 -0.683 0.466 -0.303 -14.096 -28.548 3.934 27 D_G6:C44_F D 6 ? F 44 ? 19 1 1 E A 11 1_555 F A 19 1_555 -6.418 -0.466 -1.440 18.173 13.539 57.004 28 E_A11:A43_F E 11 ? F 43 ? ? 5 1 E C 13 1_555 F G 14 1_555 0.790 0.092 -0.491 6.198 -2.233 -3.871 29 E_C13:G38_F E 13 ? F 38 ? 19 1 1 E G 14 1_555 F C 11 1_555 0.050 0.446 -0.649 -16.572 1.969 6.141 30 E_G14:C35_F E 14 ? F 35 ? 19 1 1 E G 2 1_555 D C 14 1_555 1.016 -0.167 -1.496 -19.191 -17.373 -16.082 31 E_G2:C14_D E 2 ? D 14 ? ? 1 1 E A 3 1_555 D U 13 1_555 0.359 0.753 -0.218 -9.279 -3.018 -11.829 32 E_A3:U13_D E 3 ? D 13 ? 20 1 1 E A 4 1_555 D U 12 1_555 0.718 0.191 -0.493 -7.803 -2.905 -1.131 33 E_A4:U12_D E 4 ? D 12 ? 20 1 1 E G 5 1_555 D C 11 1_555 0.602 -0.219 -0.431 -17.584 -24.021 -1.168 34 E_G5:C11_D E 5 ? D 11 ? 19 1 1 E C 6 1_555 D G 10 1_555 -1.640 0.397 -0.637 14.361 -14.861 -5.760 35 E_C6:G10_D E 6 ? D 10 ? ? 1 1 E U 7 1_555 D A 9 1_555 -0.323 0.770 -0.429 4.288 -15.855 -1.693 36 E_U7:A9_D E 7 ? D 9 ? 20 1 1 E C 8 1_555 D G 8 1_555 0.320 0.624 -0.205 4.133 -18.057 3.184 37 E_C8:G8_D E 8 ? D 8 ? 19 1 1 E U 9 1_555 F A 10 1_555 4.642 -2.432 -0.188 -2.371 -3.730 -97.687 38 E_U9:A34_F E 9 ? F 34 ? 24 4 1 E C 17 1_555 F A 7 1_555 -5.242 0.234 -2.166 51.676 -20.299 -16.167 39 E_C17:A31_F E 17 ? F 31 ? ? ? 1 E C 18 1_555 F G 6 1_555 -0.311 0.210 -0.012 2.377 -7.477 4.286 40 E_C18:G30_F E 18 ? F 30 ? 19 1 1 E C 19 1_555 F G 5 1_555 -0.953 0.720 -0.354 3.375 -6.840 2.852 41 E_C19:G29_F E 19 ? F 29 ? ? 1 1 E C 20 1_555 F G 4 1_555 -1.382 0.493 -0.616 15.997 -4.129 9.355 42 E_C20:G28_F E 20 ? F 28 ? ? 1 1 E G 22 1_555 F C 2 1_555 0.780 0.048 0.173 -21.033 -33.447 -27.754 43 E_G22:C26_F E 22 ? F 26 ? ? 1 1 E C 23 1_555 F G 1 1_555 0.899 -0.374 1.749 -29.208 -21.346 -0.723 44 E_C23:G25_F E 23 ? F 25 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 C G 24 1_555 A A 3 1_555 C U 23 1_555 -0.137 -1.201 2.975 -3.619 15.736 32.003 -3.849 -0.212 2.170 26.536 6.102 35.751 1 AA_C2A3:U47G48_CC A 2 ? C 48 ? A 3 ? C 47 ? 1 A A 3 1_555 C U 23 1_555 A C 4 1_555 C G 22 1_555 -0.067 -1.324 3.074 0.475 4.166 33.321 -2.916 0.188 2.891 7.229 -0.824 33.576 2 AA_A3C4:G46U47_CC A 3 ? C 47 ? A 4 ? C 46 ? 1 A C 4 1_555 C G 22 1_555 A U 5 1_555 C A 21 1_555 -0.336 -1.691 3.440 -2.620 5.829 30.462 -4.277 0.121 3.088 10.942 4.918 31.109 3 AA_C4U5:A45G46_CC A 4 ? C 46 ? A 5 ? C 45 ? 1 A U 5 1_555 C A 21 1_555 A G 6 1_555 C C 20 1_555 0.143 -1.649 3.496 3.658 12.026 31.944 -4.662 0.323 2.717 20.870 -6.349 34.269 4 AA_U5G6:C44A45_CC A 5 ? C 45 ? A 6 ? C 44 ? 1 A G 6 1_555 C C 20 1_555 C A 13 1_555 C A 19 1_555 -3.502 0.757 1.498 120.991 126.640 -89.046 -0.967 -1.190 2.385 -63.844 60.996 -176.541 5 AC_G6A37:A43C44_CC A 6 ? C 44 ? C 37 ? C 43 ? 1 B G 2 1_555 A C 14 1_555 B A 3 1_555 A U 13 1_555 -0.073 -1.270 3.106 -0.481 16.038 28.490 -4.646 0.059 2.112 29.789 0.894 32.616 6 BB_G2A3:U13C14_AA B 2 ? A 14 ? B 3 ? A 13 ? 1 B A 3 1_555 A U 13 1_555 B A 4 1_555 A U 12 1_555 -0.170 -1.087 3.488 -2.444 13.867 33.979 -3.640 -0.067 2.849 22.564 3.977 36.701 7 BB_A3A4:U12U13_AA B 3 ? A 13 ? B 4 ? A 12 ? 1 B A 4 1_555 A U 12 1_555 B G 5 1_555 A C 11 1_555 -0.113 -1.474 3.712 3.099 15.229 35.631 -4.176 0.569 2.852 23.555 -4.793 38.771 8 BB_A4G5:C11U12_AA B 4 ? A 12 ? B 5 ? A 11 ? 1 B G 5 1_555 A C 11 1_555 B C 6 1_555 A G 10 1_555 -0.398 -1.753 2.788 -6.421 3.210 20.655 -5.664 -1.033 2.498 8.622 17.251 21.854 9 BB_G5C6:G10C11_AA B 5 ? A 11 ? B 6 ? A 10 ? 1 B C 6 1_555 A G 10 1_555 B U 7 1_555 A A 9 1_555 -0.011 -1.430 3.330 -3.546 7.678 30.176 -4.050 -0.627 2.870 14.396 6.648 31.312 10 BB_C6U7:A9G10_AA B 6 ? A 10 ? B 7 ? A 9 ? 1 B U 7 1_555 A A 9 1_555 B C 8 1_555 A G 8 1_555 0.249 -1.883 3.012 8.466 3.409 26.146 -4.681 1.323 2.697 7.260 -18.029 27.667 11 BB_U7C8:G8A9_AA B 7 ? A 9 ? B 8 ? A 8 ? 1 B C 8 1_555 A G 8 1_555 B U 9 1_555 C A 10 1_555 -2.156 -2.477 4.198 3.407 13.234 87.208 -2.129 1.640 3.802 9.545 -2.457 88.059 12 BB_C8U9:A34G8_CA B 8 ? A 8 ? B 9 ? C 34 ? 1 B C 13 1_555 C G 14 1_555 B G 14 1_555 C C 11 1_555 -0.061 -1.988 3.751 5.270 12.093 20.042 -8.646 1.827 2.138 30.805 -13.426 23.957 13 BB_C13G14:C35G38_CC B 13 ? C 38 ? B 14 ? C 35 ? 1 B C 18 1_555 C G 6 1_555 B C 19 1_555 C G 5 1_555 -0.435 -1.904 3.370 1.908 3.707 22.948 -5.952 1.717 2.984 9.219 -4.745 23.318 14 BB_C18C19:G29G30_CC B 18 ? C 30 ? B 19 ? C 29 ? 1 B C 19 1_555 C G 5 1_555 B C 20 1_555 C G 4 1_555 -0.460 -1.441 3.102 -2.191 8.943 29.885 -4.189 0.484 2.598 16.845 4.127 31.240 15 BB_C19C20:G28G29_CC B 19 ? C 29 ? B 20 ? C 28 ? 1 B C 20 1_555 C G 4 1_555 B A 21 1_555 C U 3 1_555 0.014 -1.402 3.437 -2.210 15.263 35.587 -3.936 -0.285 2.635 23.651 3.424 38.685 16 BB_C20A21:U27G28_CC B 20 ? C 28 ? B 21 ? C 27 ? 1 B A 21 1_555 C U 3 1_555 B G 22 1_555 C C 2 1_555 -0.305 -1.584 3.316 -1.224 10.583 33.453 -4.130 0.333 2.715 17.831 2.062 35.062 17 BB_A21G22:C26U27_CC B 21 ? C 27 ? B 22 ? C 26 ? 1 B G 22 1_555 C C 2 1_555 B C 23 1_555 C G 1 1_555 0.331 -1.599 3.384 0.303 19.022 40.721 -3.725 -0.409 2.443 25.712 -0.409 44.774 18 BB_G22C23:G25C26_CC B 22 ? C 26 ? B 23 ? C 25 ? 1 D C 2 1_555 F G 24 1_555 D A 3 1_555 F U 23 1_555 -0.254 -1.219 2.824 0.932 14.021 29.623 -4.062 0.578 2.045 25.681 -1.707 32.719 19 DD_C2A3:U47G48_FF D 2 ? F 48 ? D 3 ? F 47 ? 1 D A 3 1_555 F U 23 1_555 D C 4 1_555 F G 22 1_555 -0.376 -1.114 2.992 0.648 2.898 35.164 -2.224 0.707 2.887 4.787 -1.070 35.285 20 DD_A3C4:G46U47_FF D 3 ? F 47 ? D 4 ? F 46 ? 1 D C 4 1_555 F G 22 1_555 D U 5 1_555 F A 21 1_555 0.444 -1.548 3.371 0.606 4.031 29.291 -3.889 -0.742 3.143 7.922 -1.191 29.567 21 DD_C4U5:A45G46_FF D 4 ? F 46 ? D 5 ? F 45 ? 1 D U 5 1_555 F A 21 1_555 D G 6 1_555 F C 20 1_555 0.197 -1.485 3.901 5.125 12.973 32.381 -4.617 0.527 3.094 22.032 -8.703 35.183 22 DD_U5G6:C44A45_FF D 5 ? F 45 ? D 6 ? F 44 ? 1 D G 6 1_555 F C 20 1_555 E A 11 1_555 F A 19 1_555 -4.067 -3.982 3.082 15.344 24.265 66.226 -3.937 3.815 0.912 21.215 -13.415 71.526 23 DE_G6A11:A43C44_FF D 6 ? F 44 ? E 11 ? F 43 ? 1 E A 11 1_555 F A 19 1_555 E C 13 1_555 F G 14 1_555 1.899 -1.454 7.092 -9.254 13.617 117.306 -1.141 -1.307 6.868 7.952 5.404 118.024 24 EE_A11C13:G38A43_FF E 11 ? F 43 ? E 13 ? F 38 ? 1 E C 13 1_555 F G 14 1_555 E G 14 1_555 F C 11 1_555 0.227 -1.953 3.858 3.785 13.681 23.645 -7.564 0.481 2.396 30.156 -8.342 27.527 25 EE_C13G14:C35G38_FF E 13 ? F 38 ? E 14 ? F 35 ? 1 E G 2 1_555 D C 14 1_555 E A 3 1_555 D U 13 1_555 -1.088 -1.936 3.030 -13.219 8.722 22.647 -6.014 -0.676 2.406 19.449 29.476 27.576 26 EE_G2A3:U13C14_DD E 2 ? D 14 ? E 3 ? D 13 ? 1 E A 3 1_555 D U 13 1_555 E A 4 1_555 D U 12 1_555 0.491 -1.365 3.565 -1.576 6.683 31.254 -3.739 -1.189 3.185 12.221 2.882 31.981 27 EE_A3A4:U12U13_DD E 3 ? D 13 ? E 4 ? D 12 ? 1 E A 4 1_555 D U 12 1_555 E G 5 1_555 D C 11 1_555 0.190 -1.469 3.757 4.273 13.759 34.337 -4.275 0.313 2.975 22.136 -6.875 37.153 28 EE_A4G5:C11U12_DD E 4 ? D 12 ? E 5 ? D 11 ? 1 E G 5 1_555 D C 11 1_555 E C 6 1_555 D G 10 1_555 -0.348 -2.380 2.628 -0.923 2.601 17.539 -8.871 0.715 2.268 8.462 3.003 17.753 29 EE_G5C6:G10C11_DD E 5 ? D 11 ? E 6 ? D 10 ? 1 E C 6 1_555 D G 10 1_555 E U 7 1_555 D A 9 1_555 0.296 -1.293 3.595 -0.649 8.605 35.866 -3.275 -0.561 3.205 13.729 1.035 36.857 30 EE_C6U7:A9G10_DD E 6 ? D 10 ? E 7 ? D 9 ? 1 E U 7 1_555 D A 9 1_555 E C 8 1_555 D G 8 1_555 0.139 -1.184 3.152 0.062 8.088 32.700 -3.261 -0.232 2.788 14.097 -0.108 33.659 31 EE_U7C8:G8A9_DD E 7 ? D 9 ? E 8 ? D 8 ? 1 E C 8 1_555 D G 8 1_555 E U 9 1_555 F A 10 1_555 -3.209 -1.549 3.498 1.550 9.061 79.539 -1.455 2.539 3.284 7.060 -1.207 79.980 32 EE_C8U9:A34G8_FD E 8 ? D 8 ? E 9 ? F 34 ? 1 E C 17 1_555 F A 7 1_555 E C 18 1_555 F G 6 1_555 0.772 -1.976 4.875 -17.640 19.709 56.702 -3.176 -1.877 3.713 19.619 17.560 62.101 33 EE_C17C18:G30A31_FF E 17 ? F 31 ? E 18 ? F 30 ? 1 E C 18 1_555 F G 6 1_555 E C 19 1_555 F G 5 1_555 -0.011 -1.558 3.128 3.733 3.000 27.769 -3.854 0.836 2.921 6.192 -7.706 28.171 34 EE_C18C19:G29G30_FF E 18 ? F 30 ? E 19 ? F 29 ? 1 E C 19 1_555 F G 5 1_555 E C 20 1_555 F G 4 1_555 0.348 -1.155 2.957 -2.539 6.025 27.494 -3.576 -1.223 2.607 12.454 5.249 28.246 35 EE_C19C20:G28G29_FF E 19 ? F 29 ? E 20 ? F 28 ? 1 E G 22 1_555 F C 2 1_555 E C 23 1_555 F G 1 1_555 2.861 -1.873 3.438 6.858 21.070 41.516 -4.101 -3.032 2.661 27.500 -8.951 46.827 36 EE_G22C23:G25C26_FF E 22 ? F 26 ? E 23 ? F 25 ? # _pdbx_audit_support.funding_organization 'European Research Council (ERC)' _pdbx_audit_support.country 'European Union' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 9SI _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 9SI _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7Q7X _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7Q7Z _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008485 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008485 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_