HEADER TRANSFERASE 11-NOV-21 7Q8Y TITLE CRYSTAL STRUCTURE OF TTBK2 IN COMPLEX WITH VNG2.73 (COMPOUND 42) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAU-TUBULIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTBK2, KIAA0847; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, TTBK2, TAU TUBULIN KINASE, KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,V.NOZAL,A.MARTINEZ,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (SGC) REVDAT 2 31-JAN-24 7Q8Y 1 REMARK REVDAT 1 09-MAR-22 7Q8Y 0 JRNL AUTH V.NOZAL,L.MARTINEZ-GONZALEZ,M.GOMEZ-ALMERIA, JRNL AUTH 2 C.GONZALO-CONSUEGRA,P.SANTANA,A.CHAIKUAD,E.PEREZ-CUEVAS, JRNL AUTH 3 S.KNAPP,D.LIETHA,D.RAMIREZ,S.PETRALLA,B.MONTI,C.GIL, JRNL AUTH 4 A.MARTIN-REQUERO,V.PALOMO,E.DE LAGO,A.MARTINEZ JRNL TITL TDP-43 MODULATION BY TAU-TUBULIN KINASE 1 INHIBITORS: A NEW JRNL TITL 2 AVENUE FOR FUTURE AMYOTROPHIC LATERAL SCLEROSIS THERAPY. JRNL REF J.MED.CHEM. V. 65 1585 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34978799 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01942 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 97667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 394 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 739 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5033 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4823 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6798 ; 1.610 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11069 ; 1.448 ; 1.596 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 611 ; 6.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;30.002 ;20.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 914 ;12.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;13.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6039 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1287 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 298 B 7 298 9381 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4491 -31.9231 40.9774 REMARK 3 T TENSOR REMARK 3 T11: 0.0061 T22: 0.0139 REMARK 3 T33: 0.0187 T12: 0.0051 REMARK 3 T13: -0.0020 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.0982 L22: 0.8180 REMARK 3 L33: 1.7683 L12: 0.3287 REMARK 3 L13: -0.6725 L23: -0.4447 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0474 S13: -0.0802 REMARK 3 S21: -0.0228 S22: -0.0216 S23: 0.0707 REMARK 3 S31: 0.0563 S32: -0.0573 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1896 -22.8218 22.6168 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.0444 REMARK 3 T33: 0.0222 T12: 0.0320 REMARK 3 T13: 0.0016 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.1141 L22: 2.1106 REMARK 3 L33: 1.0646 L12: -0.0689 REMARK 3 L13: -0.0582 L23: 0.2667 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.1059 S13: 0.0316 REMARK 3 S21: -0.1892 S22: -0.0552 S23: 0.1316 REMARK 3 S31: -0.0542 S32: -0.0411 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7869 19.6436 6.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0429 REMARK 3 T33: 0.0126 T12: 0.0119 REMARK 3 T13: -0.0011 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.1485 L22: 3.9333 REMARK 3 L33: 3.7734 L12: 0.3871 REMARK 3 L13: -0.6104 L23: -1.8420 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: -0.1336 S13: -0.1855 REMARK 3 S21: 0.0942 S22: 0.0756 S23: 0.0686 REMARK 3 S31: 0.1292 S32: -0.2145 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 299 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3896 0.8196 -2.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.0168 REMARK 3 T33: 0.0266 T12: -0.0077 REMARK 3 T13: -0.0175 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.7459 L22: 1.4654 REMARK 3 L33: 0.9609 L12: -0.2290 REMARK 3 L13: -0.2005 L23: 0.2967 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.0112 S13: -0.0641 REMARK 3 S21: -0.0069 S22: 0.0344 S23: 0.0272 REMARK 3 S31: 0.0958 S32: -0.0873 S33: -0.0440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7Q8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6U0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M NA/K PHOSPHATE PH 7, 5% GLYCEROL, REMARK 280 0.1M TRIS 7.5, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.93050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.37250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.93050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.37250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 PHE B 32 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 141 O HOH B 401 2.04 REMARK 500 O HOH B 404 O HOH B 672 2.04 REMARK 500 O SER A 109 O HOH A 401 2.06 REMARK 500 OD1 ASP A 141 O HOH A 402 2.06 REMARK 500 O1 PO4 B 302 O HOH B 402 2.06 REMARK 500 OE1 GLU A 52 O HOH A 403 2.10 REMARK 500 NH2 ARG B 205 O HOH B 403 2.13 REMARK 500 OE1 GLN B 72 O HOH B 404 2.14 REMARK 500 NE ARG A 106 O HOH A 404 2.15 REMARK 500 O HOH B 753 O HOH B 756 2.16 REMARK 500 O HOH A 732 O HOH A 747 2.16 REMARK 500 O HOH A 550 O HOH A 734 2.16 REMARK 500 NH2 ARG A 79 O HOH A 405 2.17 REMARK 500 O HOH B 416 O HOH B 727 2.18 REMARK 500 NH2 ARG A 79 O HOH A 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 653 O HOH B 665 4545 2.01 REMARK 500 O HOH A 519 O HOH B 573 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 205 NE ARG A 205 CZ 0.080 REMARK 500 GLU B 298 CD GLU B 298 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 205 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 20 -50.40 -137.31 REMARK 500 ARG A 140 -1.28 77.13 REMARK 500 ASP A 141 40.40 -141.37 REMARK 500 ARG B 20 -47.34 -136.09 REMARK 500 ARG B 140 -0.27 72.75 REMARK 500 ASP B 141 53.64 -141.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 781 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 757 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 758 DISTANCE = 6.53 ANGSTROMS DBREF 7Q8Y A 1 299 UNP Q6IQ55 TTBK2_HUMAN 1 299 DBREF 7Q8Y B 1 299 UNP Q6IQ55 TTBK2_HUMAN 1 299 SEQADV 7Q8Y SER A 0 UNP Q6IQ55 EXPRESSION TAG SEQADV 7Q8Y PRO A 8 UNP Q6IQ55 LEU 8 CONFLICT SEQADV 7Q8Y SER B 0 UNP Q6IQ55 EXPRESSION TAG SEQADV 7Q8Y PRO B 8 UNP Q6IQ55 LEU 8 CONFLICT SEQRES 1 A 300 SER MET SER GLY GLY GLY GLU GLN PRO ASP ILE LEU SER SEQRES 2 A 300 VAL GLY ILE LEU VAL LYS GLU ARG TRP LYS VAL LEU ARG SEQRES 3 A 300 LYS ILE GLY GLY GLY GLY PHE GLY GLU ILE TYR ASP ALA SEQRES 4 A 300 LEU ASP MET LEU THR ARG GLU ASN VAL ALA LEU LYS VAL SEQRES 5 A 300 GLU SER ALA GLN GLN PRO LYS GLN VAL LEU LYS MET GLU SEQRES 6 A 300 VAL ALA VAL LEU LYS LYS LEU GLN GLY LYS ASP HIS VAL SEQRES 7 A 300 CYS ARG PHE ILE GLY CYS GLY ARG ASN ASP ARG PHE ASN SEQRES 8 A 300 TYR VAL VAL MET GLN LEU GLN GLY ARG ASN LEU ALA ASP SEQRES 9 A 300 LEU ARG ARG SER GLN SER ARG GLY THR PHE THR ILE SER SEQRES 10 A 300 THR THR LEU ARG LEU GLY ARG GLN ILE LEU GLU SER ILE SEQRES 11 A 300 GLU SER ILE HIS SER VAL GLY PHE LEU HIS ARG ASP ILE SEQRES 12 A 300 LYS PRO SER ASN PHE ALA MET GLY ARG PHE PRO SER THR SEQRES 13 A 300 CYS ARG LYS CYS TYR MET LEU ASP PHE GLY LEU ALA ARG SEQRES 14 A 300 GLN PHE THR ASN SER CYS GLY ASP VAL ARG PRO PRO ARG SEQRES 15 A 300 ALA VAL ALA GLY PHE ARG GLY THR VAL ARG TYR ALA SER SEQRES 16 A 300 ILE ASN ALA HIS ARG ASN ARG GLU MET GLY ARG HIS ASP SEQRES 17 A 300 ASP LEU TRP SER LEU PHE TYR MET LEU VAL GLU PHE VAL SEQRES 18 A 300 VAL GLY GLN LEU PRO TRP ARG LYS ILE LYS ASP LYS GLU SEQRES 19 A 300 GLN VAL GLY SER ILE LYS GLU ARG TYR ASP HIS ARG LEU SEQRES 20 A 300 MET LEU LYS HIS LEU PRO PRO GLU PHE SER ILE PHE LEU SEQRES 21 A 300 ASP HIS ILE SER SER LEU ASP TYR PHE THR LYS PRO ASP SEQRES 22 A 300 TYR GLN LEU LEU THR SER VAL PHE ASP ASN SER ILE LYS SEQRES 23 A 300 THR PHE GLY VAL ILE GLU SER ASP PRO PHE ASP TRP GLU SEQRES 24 A 300 LYS SEQRES 1 B 300 SER MET SER GLY GLY GLY GLU GLN PRO ASP ILE LEU SER SEQRES 2 B 300 VAL GLY ILE LEU VAL LYS GLU ARG TRP LYS VAL LEU ARG SEQRES 3 B 300 LYS ILE GLY GLY GLY GLY PHE GLY GLU ILE TYR ASP ALA SEQRES 4 B 300 LEU ASP MET LEU THR ARG GLU ASN VAL ALA LEU LYS VAL SEQRES 5 B 300 GLU SER ALA GLN GLN PRO LYS GLN VAL LEU LYS MET GLU SEQRES 6 B 300 VAL ALA VAL LEU LYS LYS LEU GLN GLY LYS ASP HIS VAL SEQRES 7 B 300 CYS ARG PHE ILE GLY CYS GLY ARG ASN ASP ARG PHE ASN SEQRES 8 B 300 TYR VAL VAL MET GLN LEU GLN GLY ARG ASN LEU ALA ASP SEQRES 9 B 300 LEU ARG ARG SER GLN SER ARG GLY THR PHE THR ILE SER SEQRES 10 B 300 THR THR LEU ARG LEU GLY ARG GLN ILE LEU GLU SER ILE SEQRES 11 B 300 GLU SER ILE HIS SER VAL GLY PHE LEU HIS ARG ASP ILE SEQRES 12 B 300 LYS PRO SER ASN PHE ALA MET GLY ARG PHE PRO SER THR SEQRES 13 B 300 CYS ARG LYS CYS TYR MET LEU ASP PHE GLY LEU ALA ARG SEQRES 14 B 300 GLN PHE THR ASN SER CYS GLY ASP VAL ARG PRO PRO ARG SEQRES 15 B 300 ALA VAL ALA GLY PHE ARG GLY THR VAL ARG TYR ALA SER SEQRES 16 B 300 ILE ASN ALA HIS ARG ASN ARG GLU MET GLY ARG HIS ASP SEQRES 17 B 300 ASP LEU TRP SER LEU PHE TYR MET LEU VAL GLU PHE VAL SEQRES 18 B 300 VAL GLY GLN LEU PRO TRP ARG LYS ILE LYS ASP LYS GLU SEQRES 19 B 300 GLN VAL GLY SER ILE LYS GLU ARG TYR ASP HIS ARG LEU SEQRES 20 B 300 MET LEU LYS HIS LEU PRO PRO GLU PHE SER ILE PHE LEU SEQRES 21 B 300 ASP HIS ILE SER SER LEU ASP TYR PHE THR LYS PRO ASP SEQRES 22 B 300 TYR GLN LEU LEU THR SER VAL PHE ASP ASN SER ILE LYS SEQRES 23 B 300 THR PHE GLY VAL ILE GLU SER ASP PRO PHE ASP TRP GLU SEQRES 24 B 300 LYS HET PO4 A 301 5 HET PO4 A 302 5 HET 9IV A 303 48 HET PO4 B 301 5 HET PO4 B 302 5 HET 9IV B 303 24 HETNAM PO4 PHOSPHATE ION HETNAM 9IV ~{N}-[4-(2-CHLORANYLPHENOXY)PHENYL]-7~{H}-PYRROLO[2,3- HETNAM 2 9IV D]PYRIMIDIN-4-AMINE FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 9IV 2(C18 H13 CL N4 O) FORMUL 9 HOH *739(H2 O) HELIX 1 AA1 VAL A 60 LEU A 71 1 12 HELIX 2 AA2 ASN A 100 GLN A 108 1 9 HELIX 3 AA3 THR A 114 VAL A 135 1 22 HELIX 4 AA4 LYS A 143 SER A 145 5 3 HELIX 5 AA5 SER A 194 ARG A 199 1 6 HELIX 6 AA6 GLY A 204 GLY A 222 1 19 HELIX 7 AA7 ASP A 231 TYR A 242 1 12 HELIX 8 AA8 ASP A 243 LYS A 249 5 7 HELIX 9 AA9 GLU A 254 SER A 264 1 11 HELIX 10 AB1 ASP A 272 PHE A 287 1 16 HELIX 11 AB2 PHE A 295 LYS A 299 5 5 HELIX 12 AB3 GLY B 29 GLY B 33 5 5 HELIX 13 AB4 VAL B 60 LEU B 71 1 12 HELIX 14 AB5 ASN B 100 SER B 107 1 8 HELIX 15 AB6 THR B 114 VAL B 135 1 22 HELIX 16 AB7 LYS B 143 SER B 145 5 3 HELIX 17 AB8 THR B 189 ALA B 193 5 5 HELIX 18 AB9 SER B 194 ARG B 199 1 6 HELIX 19 AC1 GLY B 204 GLY B 222 1 19 HELIX 20 AC2 ASP B 231 TYR B 242 1 12 HELIX 21 AC3 ASP B 243 LYS B 249 5 7 HELIX 22 AC4 GLU B 254 LEU B 265 1 12 HELIX 23 AC5 ASP B 272 PHE B 287 1 16 HELIX 24 AC6 PHE B 295 LYS B 299 5 5 SHEET 1 AA1 6 LEU A 16 VAL A 17 0 SHEET 2 AA1 6 TRP A 21 GLY A 28 -1 O TRP A 21 N VAL A 17 SHEET 3 AA1 6 GLU A 34 ASP A 40 -1 O ASP A 37 N LEU A 24 SHEET 4 AA1 6 GLU A 45 SER A 53 -1 O GLU A 45 N ASP A 40 SHEET 5 AA1 6 PHE A 89 MET A 94 -1 O VAL A 92 N LYS A 50 SHEET 6 AA1 6 PHE A 80 ARG A 85 -1 N GLY A 82 O VAL A 93 SHEET 1 AA2 2 PHE A 137 LEU A 138 0 SHEET 2 AA2 2 ARG A 168 GLN A 169 -1 O ARG A 168 N LEU A 138 SHEET 1 AA3 2 PHE A 147 MET A 149 0 SHEET 2 AA3 2 CYS A 159 MET A 161 -1 O TYR A 160 N ALA A 148 SHEET 1 AA4 6 LEU B 16 VAL B 17 0 SHEET 2 AA4 6 TRP B 21 GLY B 28 -1 O TRP B 21 N VAL B 17 SHEET 3 AA4 6 GLU B 34 ASP B 40 -1 O ASP B 37 N ARG B 25 SHEET 4 AA4 6 GLU B 45 SER B 53 -1 O GLU B 45 N ASP B 40 SHEET 5 AA4 6 PHE B 89 GLN B 95 -1 O MET B 94 N ALA B 48 SHEET 6 AA4 6 PHE B 80 ARG B 85 -1 N GLY B 82 O VAL B 93 SHEET 1 AA5 2 PHE B 137 LEU B 138 0 SHEET 2 AA5 2 ARG B 168 GLN B 169 -1 O ARG B 168 N LEU B 138 SHEET 1 AA6 2 PHE B 147 MET B 149 0 SHEET 2 AA6 2 CYS B 159 MET B 161 -1 O TYR B 160 N ALA B 148 CRYST1 55.861 114.745 120.550 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008295 0.00000