HEADER TOXIN 15-NOV-21 7QA1 TITLE THE STRUCTURE OF NATURAL CRYSTALS OF THE LYSINIBACILLUS SPHAERICUS TITLE 2 TPP49AA1 PESTICIDAL PROTEIN ELUCIDATED USING SERIAL FEMTOSECOND TITLE 3 CRYSTALLOGRAPHY AT AN X-RAY FREE ELECTRON LASER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN-10 PESTICIDAL PROTEIN (TPP) 49AA1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSINIBACILLUS SPHAERICUS; SOURCE 3 ORGANISM_TAXID: 1421; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS THURINGIENSIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1428 KEYWDS LYSINIBACILLUS SPHAERICUS, BACILLUS THURINGIENSIS, TPP49AA1, KEYWDS 2 CRY48AA1, XFEL, SFX, MOSQUITOES, CULEX QUINQUEFASCIATUS, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WILLIAMSON,P.J.RIZKALLAH,C.BERRY,D.OBERTHUR,M.GALCHENKOVA, AUTHOR 2 O.YEFANOV,R.BEAN,H.L.BEST REVDAT 3 07-FEB-24 7QA1 1 REMARK REVDAT 2 24-MAY-23 7QA1 1 AUTHOR JRNL REVDAT 1 17-MAY-23 7QA1 0 JRNL AUTH L.J.WILLIAMSON,P.J.RIZKALLAH,C.BERRY,D.OBERTHUR, JRNL AUTH 2 M.GALCHENKOVA,O.YEFANOV,R.BEAN,H.L.BEST JRNL TITL THE STRUCTURE OF NATURAL CRYSTALS OF THE LYSINIBACILLUS JRNL TITL 2 SPHAERICUS TPP49AA1 PESTICIDAL PROTEIN ELUCIDATED USING JRNL TITL 3 SERIAL FEMTOSECOND CRYSTALLOGRAPHY AT AN X-RAY FREE ELECTRON JRNL TITL 4 LASER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7006 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6476 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9544 ; 1.848 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14817 ; 1.321 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 852 ; 7.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 453 ;35.592 ;21.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1151 ;14.739 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;18.811 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 919 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8232 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1824 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 49 464 B 49 464 13358 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1910 -24.4205 -42.3198 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.2356 REMARK 3 T33: 0.1239 T12: 0.0553 REMARK 3 T13: -0.0531 T23: -0.1582 REMARK 3 L TENSOR REMARK 3 L11: 2.9852 L22: 3.3240 REMARK 3 L33: 4.2023 L12: -0.8921 REMARK 3 L13: -0.1879 L23: 1.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.1522 S12: 0.6155 S13: -0.5187 REMARK 3 S21: -0.2675 S22: -0.3378 S23: 0.3814 REMARK 3 S31: 0.1226 S32: -0.3177 S33: 0.1856 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7270 1.7502 -6.9395 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0658 REMARK 3 T33: 0.0187 T12: -0.0384 REMARK 3 T13: -0.0133 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.6773 L22: 1.7427 REMARK 3 L33: 3.4306 L12: 0.1827 REMARK 3 L13: 0.4213 L23: 1.6652 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0599 S13: 0.0545 REMARK 3 S21: 0.0304 S22: -0.0215 S23: -0.0954 REMARK 3 S31: -0.2309 S32: 0.2199 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7792 -32.2757 2.9731 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1062 REMARK 3 T33: 0.0793 T12: 0.0780 REMARK 3 T13: 0.1135 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 2.9577 L22: 2.8393 REMARK 3 L33: 4.5033 L12: -0.1998 REMARK 3 L13: -1.2649 L23: -0.9371 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: -0.2856 S13: -0.2518 REMARK 3 S21: 0.5705 S22: 0.1597 S23: 0.3842 REMARK 3 S31: -0.1381 S32: -0.2256 S33: -0.0286 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 215 B 464 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6531 -24.7949 -32.4478 REMARK 3 T TENSOR REMARK 3 T11: 0.0357 T22: 0.0283 REMARK 3 T33: 0.0200 T12: -0.0245 REMARK 3 T13: -0.0091 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.0539 L22: 0.7649 REMARK 3 L33: 3.3377 L12: 0.3969 REMARK 3 L13: -1.7758 L23: -0.5026 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.0557 S13: 0.0851 REMARK 3 S21: -0.0286 S22: -0.0024 S23: -0.0698 REMARK 3 S31: -0.1966 S32: 0.1713 S33: -0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7QA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : SPB/SFX REMARK 200 X-RAY GENERATOR MODEL : EUROPEAN XFEL BEAMLINE SPB/SFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.33 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : AGIPD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 485.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WA1, 5FOY, 5G37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATURAL CRYSTALLISATION, IN CELL, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.66500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.66500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 269 CD GLU B 269 OE1 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 309 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLU A 424 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP B 198 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG B 267 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 271 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 342 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 56.74 -106.04 REMARK 500 ASN A 69 -8.42 -141.45 REMARK 500 ASN A 76 48.68 -109.26 REMARK 500 SER A 275 60.69 -156.74 REMARK 500 ASN B 51 58.11 -105.73 REMARK 500 ASN B 69 21.82 -155.99 REMARK 500 ASN B 76 54.77 -112.15 REMARK 500 ASN B 76 47.37 -107.19 REMARK 500 SER B 275 63.30 -155.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QA1 A 49 464 PDB 7QA1 7QA1 49 464 DBREF 7QA1 B 49 464 PDB 7QA1 7QA1 49 464 SEQRES 1 A 416 ASN LEU ASN LEU PRO GLU GLN SER THR ARG PHE GLN THR SEQRES 2 A 416 ILE ALA SER ILE HIS SER ASN ASN CYS SER PHE GLU ILE SEQRES 3 A 416 LEU ASN ASN ASP PRO GLY TYR ILE TYR GLY ASP SER VAL SEQRES 4 A 416 ASP GLY GLU CYS ARG ILE ALA VAL ALA HIS ARG GLU LEU SEQRES 5 A 416 GLY ASN GLY LEU GLU ARG THR GLY ASP ASP ARG PHE LEU SEQRES 6 A 416 PHE ILE PHE TYR ALA LEU ASP ASN ASN ASN PHE ILE ILE SEQRES 7 A 416 ALA ASN ARG HIS ASP GLY PHE VAL LEU GLN PHE LEU ILE SEQRES 8 A 416 ALA ASN GLY GLN GLY VAL ILE VAL SER ARG GLU TYR GLN SEQRES 9 A 416 PRO ASN ILE HIS GLN GLU PHE THR ILE GLN SER ILE ASN SEQRES 10 A 416 SER ASP THR PHE ARG LEU HIS SER ARG ASP THR ASN THR SEQRES 11 A 416 PHE ALA THR VAL CYS TRP ALA GLN PHE ASN SER TRP THR SEQRES 12 A 416 LYS ILE VAL SER ARG VAL ASP ASN PRO GLY ALA PRO ASN SEQRES 13 A 416 ALA ASN LEU LYS HIS ARG SER LEU LEU THR ASP ILE ASN SEQRES 14 A 416 MET PRO GLN LEU PRO SER LEU THR PRO LEU GLN PRO LEU SEQRES 15 A 416 PRO ARG LEU THR GLU LEU GLU ASP GLY GLY LEU SER PRO SEQRES 16 A 416 ALA GLN ALA PRO ARG ALA ILE ILE GLY ARG THR LEU ILE SEQRES 17 A 416 PRO CYS LEU PHE VAL ASN ASP PRO VAL LEU ARG LEU GLU SEQRES 18 A 416 ASN ARG ILE LYS GLN SER PRO TYR TYR VAL LEU GLU HIS SEQRES 19 A 416 ARG GLN TYR TRP HIS ARG ILE TRP THR ASP ILE PHE THR SEQRES 20 A 416 ALA GLY GLU ARG ARG GLU TYR ARG GLU VAL THR GLY ILE SEQRES 21 A 416 ASN ASN ASN ALA GLN ASN ASP MET ASN LYS MET ILE ASN SEQRES 22 A 416 ILE THR ILE GLY ALA ASP GLY PRO ASN ARG LEU ARG PHE SEQRES 23 A 416 GLY ASN LEU SER THR PRO PHE ARG GLN GLN ILE ILE ASP SEQRES 24 A 416 ASN SER ASN THR LEU GLY SER PHE ALA ASN THR ASN TYR SEQRES 25 A 416 GLY THR ARG THR ASP ILE VAL ASN VAL PHE ASN SER GLU SEQRES 26 A 416 PHE HIS GLN VAL ARG TYR ALA ARG PHE VAL LYS ALA TYR SEQRES 27 A 416 GLU TYR ARG LEU THR ARG ALA ASP GLY SER GLN VAL GLY SEQRES 28 A 416 THR PRO TRP VAL VAL LEU ASP ARG LYS GLU MET ASP LEU SEQRES 29 A 416 ARG THR TYR PRO HIS ASN MET ALA ILE THR LEU GLU ASN SEQRES 30 A 416 VAL LYS ILE ASP ASN ALA ASP ASN SER TYR ASP LEU SER SEQRES 31 A 416 ILE TRP LYS THR PRO LEU LYS LEU LYS ASP GLY LYS ILE SEQRES 32 A 416 ILE ILE GLU ASN HIS GLU ASN SER LYS PRO TYR TYR ASN SEQRES 1 B 416 ASN LEU ASN LEU PRO GLU GLN SER THR ARG PHE GLN THR SEQRES 2 B 416 ILE ALA SER ILE HIS SER ASN ASN CYS SER PHE GLU ILE SEQRES 3 B 416 LEU ASN ASN ASP PRO GLY TYR ILE TYR GLY ASP SER VAL SEQRES 4 B 416 ASP GLY GLU CYS ARG ILE ALA VAL ALA HIS ARG GLU LEU SEQRES 5 B 416 GLY ASN GLY LEU GLU ARG THR GLY ASP ASP ARG PHE LEU SEQRES 6 B 416 PHE ILE PHE TYR ALA LEU ASP ASN ASN ASN PHE ILE ILE SEQRES 7 B 416 ALA ASN ARG HIS ASP GLY PHE VAL LEU GLN PHE LEU ILE SEQRES 8 B 416 ALA ASN GLY GLN GLY VAL ILE VAL SER ARG GLU TYR GLN SEQRES 9 B 416 PRO ASN ILE HIS GLN GLU PHE THR ILE GLN SER ILE ASN SEQRES 10 B 416 SER ASP THR PHE ARG LEU HIS SER ARG ASP THR ASN THR SEQRES 11 B 416 PHE ALA THR VAL CYS TRP ALA GLN PHE ASN SER TRP THR SEQRES 12 B 416 LYS ILE VAL SER ARG VAL ASP ASN PRO GLY ALA PRO ASN SEQRES 13 B 416 ALA ASN LEU LYS HIS ARG SER LEU LEU THR ASP ILE ASN SEQRES 14 B 416 MET PRO GLN LEU PRO SER LEU THR PRO LEU GLN PRO LEU SEQRES 15 B 416 PRO ARG LEU THR GLU LEU GLU ASP GLY GLY LEU SER PRO SEQRES 16 B 416 ALA GLN ALA PRO ARG ALA ILE ILE GLY ARG THR LEU ILE SEQRES 17 B 416 PRO CYS LEU PHE VAL ASN ASP PRO VAL LEU ARG LEU GLU SEQRES 18 B 416 ASN ARG ILE LYS GLN SER PRO TYR TYR VAL LEU GLU HIS SEQRES 19 B 416 ARG GLN TYR TRP HIS ARG ILE TRP THR ASP ILE PHE THR SEQRES 20 B 416 ALA GLY GLU ARG ARG GLU TYR ARG GLU VAL THR GLY ILE SEQRES 21 B 416 ASN ASN ASN ALA GLN ASN ASP MET ASN LYS MET ILE ASN SEQRES 22 B 416 ILE THR ILE GLY ALA ASP GLY PRO ASN ARG LEU ARG PHE SEQRES 23 B 416 GLY ASN LEU SER THR PRO PHE ARG GLN GLN ILE ILE ASP SEQRES 24 B 416 ASN SER ASN THR LEU GLY SER PHE ALA ASN THR ASN TYR SEQRES 25 B 416 GLY THR ARG THR ASP ILE VAL ASN VAL PHE ASN SER GLU SEQRES 26 B 416 PHE HIS GLN VAL ARG TYR ALA ARG PHE VAL LYS ALA TYR SEQRES 27 B 416 GLU TYR ARG LEU THR ARG ALA ASP GLY SER GLN VAL GLY SEQRES 28 B 416 THR PRO TRP VAL VAL LEU ASP ARG LYS GLU MET ASP LEU SEQRES 29 B 416 ARG THR TYR PRO HIS ASN MET ALA ILE THR LEU GLU ASN SEQRES 30 B 416 VAL LYS ILE ASP ASN ALA ASP ASN SER TYR ASP LEU SER SEQRES 31 B 416 ILE TRP LYS THR PRO LEU LYS LEU LYS ASP GLY LYS ILE SEQRES 32 B 416 ILE ILE GLU ASN HIS GLU ASN SER LYS PRO TYR TYR ASN FORMUL 3 HOH *370(H2 O) HELIX 1 AA1 PRO A 53 THR A 57 5 5 HELIX 2 AA2 ASP A 109 PHE A 112 5 4 HELIX 3 AA3 ASN A 154 GLU A 158 5 5 HELIX 4 AA4 TRP A 184 GLN A 186 5 3 HELIX 5 AA5 LEU A 259 VAL A 261 5 3 HELIX 6 AA6 ARG A 267 SER A 275 1 9 HELIX 7 AA7 ASN A 309 ASN A 321 1 13 HELIX 8 AA8 SER A 338 PRO A 340 5 3 HELIX 9 AA9 PHE A 341 ASN A 350 1 10 HELIX 10 AB1 PRO B 53 THR B 57 5 5 HELIX 11 AB2 ASP B 109 PHE B 112 5 4 HELIX 12 AB3 ASN B 154 GLU B 158 5 5 HELIX 13 AB4 TRP B 184 GLN B 186 5 3 HELIX 14 AB5 LEU B 259 VAL B 261 5 3 HELIX 15 AB6 ARG B 267 SER B 275 1 9 HELIX 16 AB7 ASN B 309 ASN B 321 1 13 HELIX 17 AB8 SER B 338 PRO B 340 5 3 HELIX 18 AB9 PHE B 341 ASN B 350 1 10 SHEET 1 AA1 2 PHE A 59 GLN A 60 0 SHEET 2 AA1 2 LEU A 212 LEU A 213 -1 O LEU A 213 N PHE A 59 SHEET 1 AA2 2 ALA A 63 SER A 64 0 SHEET 2 AA2 2 LEU A 207 LYS A 208 -1 O LYS A 208 N ALA A 63 SHEET 1 AA3 2 CYS A 70 ILE A 74 0 SHEET 2 AA3 2 LEU A 100 LEU A 104 -1 O GLY A 101 N GLU A 73 SHEET 1 AA4 2 PHE A 114 ALA A 118 0 SHEET 2 AA4 2 PHE A 124 ASN A 128 -1 O ILE A 125 N TYR A 117 SHEET 1 AA5 2 VAL A 134 ALA A 140 0 SHEET 2 AA5 2 GLN A 143 ARG A 149 -1 O ARG A 149 N VAL A 134 SHEET 1 AA6 4 THR A 160 ASN A 165 0 SHEET 2 AA6 4 THR A 168 SER A 173 -1 O HIS A 172 N THR A 160 SHEET 3 AA6 4 THR A 178 VAL A 182 -1 O THR A 178 N SER A 173 SHEET 4 AA6 4 ILE A 193 ARG A 196 -1 O VAL A 194 N THR A 181 SHEET 1 AA7 5 ALA A 249 PRO A 257 0 SHEET 2 AA7 5 TYR A 277 PHE A 294 -1 O GLN A 284 N ALA A 249 SHEET 3 AA7 5 VAL A 377 THR A 391 -1 O VAL A 377 N PHE A 294 SHEET 4 AA7 5 TRP A 402 TYR A 415 -1 O TRP A 402 N TYR A 388 SHEET 5 AA7 5 ILE A 452 ILE A 453 -1 O ILE A 452 N MET A 410 SHEET 1 AA8 4 ARG A 299 GLY A 307 0 SHEET 2 AA8 4 THR A 362 PHE A 370 -1 O ASP A 365 N GLU A 304 SHEET 3 AA8 4 ALA A 420 ALA A 431 -1 O THR A 422 N PHE A 370 SHEET 4 AA8 4 LEU A 444 LYS A 447 -1 O LEU A 444 N LEU A 423 SHEET 1 AA9 3 ILE A 322 ILE A 324 0 SHEET 2 AA9 3 ARG A 331 PHE A 334 -1 O ARG A 333 N THR A 323 SHEET 3 AA9 3 LEU A 352 GLY A 353 1 O LEU A 352 N LEU A 332 SHEET 1 AB1 2 SER A 438 TRP A 440 0 SHEET 2 AB1 2 SER A 459 PRO A 461 -1 O LYS A 460 N ILE A 439 SHEET 1 AB2 2 PHE B 59 GLN B 60 0 SHEET 2 AB2 2 LEU B 212 LEU B 213 -1 O LEU B 213 N PHE B 59 SHEET 1 AB3 2 ALA B 63 SER B 64 0 SHEET 2 AB3 2 LEU B 207 LYS B 208 -1 O LYS B 208 N ALA B 63 SHEET 1 AB4 2 CYS B 70 ILE B 74 0 SHEET 2 AB4 2 LEU B 100 LEU B 104 -1 O GLY B 103 N SER B 71 SHEET 1 AB5 2 PHE B 114 ALA B 118 0 SHEET 2 AB5 2 PHE B 124 ASN B 128 -1 O ILE B 125 N TYR B 117 SHEET 1 AB6 2 VAL B 134 ALA B 140 0 SHEET 2 AB6 2 GLN B 143 ARG B 149 -1 O ARG B 149 N VAL B 134 SHEET 1 AB7 4 THR B 160 ASN B 165 0 SHEET 2 AB7 4 THR B 168 SER B 173 -1 O HIS B 172 N THR B 160 SHEET 3 AB7 4 THR B 178 VAL B 182 -1 O THR B 178 N SER B 173 SHEET 4 AB7 4 ILE B 193 ARG B 196 -1 O VAL B 194 N THR B 181 SHEET 1 AB8 5 ALA B 249 PRO B 257 0 SHEET 2 AB8 5 TYR B 277 PHE B 294 -1 O HIS B 282 N GLY B 252 SHEET 3 AB8 5 VAL B 377 THR B 391 -1 O VAL B 377 N PHE B 294 SHEET 4 AB8 5 TRP B 402 TYR B 415 -1 O ASP B 406 N LYS B 384 SHEET 5 AB8 5 ILE B 452 ILE B 453 -1 O ILE B 452 N MET B 410 SHEET 1 AB9 4 ARG B 299 GLY B 307 0 SHEET 2 AB9 4 THR B 362 PHE B 370 -1 O ARG B 363 N THR B 306 SHEET 3 AB9 4 ALA B 420 ALA B 431 -1 O THR B 422 N PHE B 370 SHEET 4 AB9 4 LEU B 444 LYS B 447 -1 O LEU B 444 N LEU B 423 SHEET 1 AC1 3 ILE B 322 ILE B 324 0 SHEET 2 AC1 3 ARG B 331 PHE B 334 -1 O ARG B 333 N THR B 323 SHEET 3 AC1 3 LEU B 352 GLY B 353 1 O LEU B 352 N LEU B 332 SHEET 1 AC2 2 SER B 438 TRP B 440 0 SHEET 2 AC2 2 SER B 459 PRO B 461 -1 O LYS B 460 N ILE B 439 SSBOND 1 CYS A 91 CYS A 183 1555 1555 2.06 SSBOND 2 CYS B 91 CYS B 183 1555 1555 2.02 CISPEP 1 GLN A 152 PRO A 153 0 -8.27 CISPEP 2 TYR A 415 PRO A 416 0 -7.52 CISPEP 3 THR A 442 PRO A 443 0 -0.08 CISPEP 4 GLN B 152 PRO B 153 0 -6.91 CISPEP 5 TYR B 415 PRO B 416 0 -6.01 CISPEP 6 THR B 442 PRO B 443 0 1.77 CRYST1 79.760 83.150 157.330 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006356 0.00000