HEADER VIRAL PROTEIN 16-NOV-21 7QA4 TITLE CRYSTAL STRUCTURE OF STABILIZED H3N2 A/HONG KONG/1/1968 HEMAGGLUTININ TITLE 2 AT 2.2 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEMAGGLUTININ; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/1968 SOURCE 3 H3N2); SOURCE 4 ORGANISM_TAXID: 506350; SOURCE 5 STRAIN: A/HONG KONG/1/1968 H3N2; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS INFLUENZA, HEMAGGLUTININ, STABILIZED, FUSION PROTEIN, UNKNOWN KEYWDS 2 FUNCTION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MILDER,J.P.M.LANGEDIJK REVDAT 2 30-MAR-22 7QA4 1 JRNL REVDAT 1 02-FEB-22 7QA4 0 JRNL AUTH F.J.MILDER,M.JONGENEELEN,T.RITSCHEL,P.BOUCHIER, JRNL AUTH 2 I.J.M.BISSCHOP,M.DE MAN,D.VELDMAN,L.LE,B.KAUFMANN, JRNL AUTH 3 M.J.G.BAKKERS,J.JURASZEK,B.BRANDENBURG,J.P.M.LANGEDIJK JRNL TITL UNIVERSAL STABILIZATION OF THE INFLUENZA HEMAGGLUTININ BY JRNL TITL 2 STRUCTURE-BASED REDESIGN OF THE PH SWITCH REGIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35131851 JRNL DOI 10.1073/PNAS.2115379119 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 108.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4081 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3568 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5573 ; 1.411 ; 1.705 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8312 ; 1.172 ; 1.626 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 7.022 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;33.109 ;22.991 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;14.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4533 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 56 REMARK 3 RESIDUE RANGE : A 272 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1510 -17.9600 2.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2270 REMARK 3 T33: 0.1958 T12: -0.0228 REMARK 3 T13: -0.0772 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 1.0595 L22: 1.3316 REMARK 3 L33: 1.0988 L12: 1.1482 REMARK 3 L13: 1.0264 L23: 1.1515 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.1105 S13: 0.1144 REMARK 3 S21: 0.1886 S22: -0.0753 S23: 0.0515 REMARK 3 S31: 0.0451 S32: 0.0273 S33: 0.0269 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -47.6180 -49.8120 -25.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.1066 REMARK 3 T33: 0.1076 T12: -0.0516 REMARK 3 T13: -0.0022 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.4531 L22: 2.1935 REMARK 3 L33: 2.6612 L12: -0.2118 REMARK 3 L13: 0.8298 L23: 0.6671 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.2722 S13: -0.2683 REMARK 3 S21: -0.1274 S22: -0.0955 S23: 0.3117 REMARK 3 S31: 0.0137 S32: -0.2475 S33: 0.0345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7QA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31315 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.192 REMARK 200 RESOLUTION RANGE LOW (A) : 108.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.60 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 108.9 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.20 REMARK 200 R MERGE FOR SHELL (I) : 2.97700 REMARK 200 R SYM FOR SHELL (I) : 2.97700 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00 %W/V PEG 3350, 0.2 M LINO3, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.04700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.04700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.04700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.04700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 77.04700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 77.04700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 77.04700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 77.04700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 77.04700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 77.04700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 77.04700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 77.04700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.04700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 77.04700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 77.04700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.04700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 77.04700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 77.04700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 77.04700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 77.04700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 77.04700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 77.04700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 77.04700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 77.04700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 77.04700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N NO3 A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 825 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 GLU A 325 REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 GLU A 386 REMARK 465 LYS A 387 REMARK 465 THR A 388 REMARK 465 LYS A 503 REMARK 465 GLY A 504 REMARK 465 VAL A 505 REMARK 465 GLY A 506 REMARK 465 GLY A 507 REMARK 465 SER A 508 REMARK 465 GLU A 509 REMARK 465 PRO A 510 REMARK 465 GLU A 511 REMARK 465 ALA A 512 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 8 CG OD1 ND2 REMARK 480 LYS A 27 CE NZ REMARK 480 ASP A 32 CG OD1 OD2 REMARK 480 LYS A 140 CE NZ REMARK 480 SER A 159 OG REMARK 480 THR A 212 OG1 CG2 REMARK 480 LYS A 238 CE NZ REMARK 480 LYS A 264 CD CE NZ REMARK 480 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 480 ILE A 335 CD1 REMARK 480 LYS A 368 CD CE NZ REMARK 480 LYS A 450 NZ REMARK 480 LYS A 468 CE NZ REMARK 480 LYS A 472 CG CD CE NZ REMARK 480 ILE A 502 C O CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 502 O HOH A 701 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 -104.50 -79.58 REMARK 500 ILE A 62 -105.73 57.85 REMARK 500 CYS A 97 -153.55 -132.56 REMARK 500 GLU A 119 108.61 -49.55 REMARK 500 PHE A 392 -107.56 -114.41 REMARK 500 GLN A 394 -137.25 -121.68 REMARK 500 ARG A 456 -117.93 52.02 REMARK 500 TYR A 470 44.53 -88.06 REMARK 500 GLN A 501 -65.24 -123.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MAN C 4 REMARK 615 NAG A 601 DBREF 7QA4 A 1 505 UNP Q91MA7 HEMA_I68A4 17 521 SEQADV 7QA4 TRP A 355 UNP Q91MA7 HIS 371 CONFLICT SEQADV 7QA4 ILE A 380 UNP Q91MA7 LYS 396 CONFLICT SEQADV 7QA4 ILE A 432 UNP Q91MA7 GLU 448 CONFLICT SEQADV 7QA4 GLY A 506 UNP Q91MA7 EXPRESSION TAG SEQADV 7QA4 GLY A 507 UNP Q91MA7 EXPRESSION TAG SEQADV 7QA4 SER A 508 UNP Q91MA7 EXPRESSION TAG SEQADV 7QA4 GLU A 509 UNP Q91MA7 EXPRESSION TAG SEQADV 7QA4 PRO A 510 UNP Q91MA7 EXPRESSION TAG SEQADV 7QA4 GLU A 511 UNP Q91MA7 EXPRESSION TAG SEQADV 7QA4 ALA A 512 UNP Q91MA7 EXPRESSION TAG SEQRES 1 A 512 GLN ASP LEU PRO GLY ASN ASP ASN SER THR ALA THR LEU SEQRES 2 A 512 CYS LEU GLY HIS HIS ALA VAL PRO ASN GLY THR LEU VAL SEQRES 3 A 512 LYS THR ILE THR ASP ASP GLN ILE GLU VAL THR ASN ALA SEQRES 4 A 512 THR GLU LEU VAL GLN SER SER SER THR GLY LYS ILE CYS SEQRES 5 A 512 ASN ASN PRO HIS ARG ILE LEU ASP GLY ILE ASP CYS THR SEQRES 6 A 512 LEU ILE ASP ALA LEU LEU GLY ASP PRO HIS CYS ASP VAL SEQRES 7 A 512 PHE GLN ASN GLU THR TRP ASP LEU PHE VAL GLU ARG SER SEQRES 8 A 512 LYS ALA PHE SER ASN CYS TYR PRO TYR ASP VAL PRO ASP SEQRES 9 A 512 TYR ALA SER LEU ARG SER LEU VAL ALA SER SER GLY THR SEQRES 10 A 512 LEU GLU PHE ILE THR GLU GLY PHE THR TRP THR GLY VAL SEQRES 11 A 512 THR GLN ASN GLY GLY SER ASN ALA CYS LYS ARG GLY PRO SEQRES 12 A 512 GLY SER GLY PHE PHE SER ARG LEU ASN TRP LEU THR LYS SEQRES 13 A 512 SER GLY SER THR TYR PRO VAL LEU ASN VAL THR MET PRO SEQRES 14 A 512 ASN ASN ASP ASN PHE ASP LYS LEU TYR ILE TRP GLY VAL SEQRES 15 A 512 HIS HIS PRO SER THR ASN GLN GLU GLN THR SER LEU TYR SEQRES 16 A 512 VAL GLN ALA SER GLY ARG VAL THR VAL SER THR ARG ARG SEQRES 17 A 512 SER GLN GLN THR ILE ILE PRO ASN ILE GLY SER ARG PRO SEQRES 18 A 512 TRP VAL ARG GLY LEU SER SER ARG ILE SER ILE TYR TRP SEQRES 19 A 512 THR ILE VAL LYS PRO GLY ASP VAL LEU VAL ILE ASN SER SEQRES 20 A 512 ASN GLY ASN LEU ILE ALA PRO ARG GLY TYR PHE LYS MET SEQRES 21 A 512 ARG THR GLY LYS SER SER ILE MET ARG SER ASP ALA PRO SEQRES 22 A 512 ILE ASP THR CYS ILE SER GLU CYS ILE THR PRO ASN GLY SEQRES 23 A 512 SER ILE PRO ASN ASP LYS PRO PHE GLN ASN VAL ASN LYS SEQRES 24 A 512 ILE THR TYR GLY ALA CYS PRO LYS TYR VAL LYS GLN ASN SEQRES 25 A 512 THR LEU LYS LEU ALA THR GLY MET ARG ASN VAL PRO GLU SEQRES 26 A 512 LYS GLN THR ARG GLY LEU PHE GLY ALA ILE ALA GLY PHE SEQRES 27 A 512 ILE GLU ASN GLY TRP GLU GLY MET ILE ASP GLY TRP TYR SEQRES 28 A 512 GLY PHE ARG TRP GLN ASN SER GLU GLY THR GLY GLN ALA SEQRES 29 A 512 ALA ASP LEU LYS SER THR GLN ALA ALA ILE ASP GLN ILE SEQRES 30 A 512 ASN GLY ILE LEU ASN ARG VAL ILE GLU LYS THR ASN GLU SEQRES 31 A 512 LYS PHE HIS GLN ILE GLU LYS GLU PHE SER GLU VAL GLU SEQRES 32 A 512 GLY ARG ILE GLN ASP LEU GLU LYS TYR VAL GLU ASP THR SEQRES 33 A 512 LYS ILE ASP LEU TRP SER TYR ASN ALA GLU LEU LEU VAL SEQRES 34 A 512 ALA LEU ILE ASN GLN HIS THR ILE ASP LEU THR ASP SER SEQRES 35 A 512 GLU MET ASN LYS LEU PHE GLU LYS THR ARG ARG GLN LEU SEQRES 36 A 512 ARG GLU ASN ALA GLU ASP MET GLY ASN GLY CYS PHE LYS SEQRES 37 A 512 ILE TYR HIS LYS CYS ASP ASN ALA CYS ILE GLU SER ILE SEQRES 38 A 512 ARG ASN GLY THR TYR ASP HIS ASP VAL TYR ARG ASP GLU SEQRES 39 A 512 ALA LEU ASN ASN ARG PHE GLN ILE LYS GLY VAL GLY GLY SEQRES 40 A 512 SER GLU PRO GLU ALA HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 601 14 HET NO3 A 602 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NO3 NITRATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 7 NO3 N O3 1- FORMUL 8 HOH *134(H2 O) HELIX 1 AA1 THR A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 73 GLN A 80 5 8 HELIX 3 AA3 ASP A 104 GLY A 116 1 13 HELIX 4 AA4 THR A 187 TYR A 195 1 9 HELIX 5 AA5 LEU A 367 ILE A 385 1 19 HELIX 6 AA6 GLY A 404 ARG A 456 1 53 HELIX 7 AA7 ASP A 474 ASN A 483 1 10 HELIX 8 AA8 ASP A 487 GLN A 501 1 15 SHEET 1 AA1 5 GLY A 360 ASP A 366 0 SHEET 2 AA1 5 TYR A 351 ASN A 357 -1 N PHE A 353 O ALA A 364 SHEET 3 AA1 5 ALA A 11 HIS A 17 -1 N CYS A 14 O ARG A 354 SHEET 4 AA1 5 CYS A 466 ILE A 469 -1 O PHE A 467 N LEU A 13 SHEET 5 AA1 5 ALA A 459 ASP A 461 -1 N GLU A 460 O LYS A 468 SHEET 1 AA2 2 THR A 24 VAL A 26 0 SHEET 2 AA2 2 ILE A 34 VAL A 36 -1 O VAL A 36 N THR A 24 SHEET 1 AA3 2 ALA A 39 GLU A 41 0 SHEET 2 AA3 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AA4 3 VAL A 43 GLN A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 ILE A 51 ASN A 54 0 SHEET 2 AA5 2 ILE A 274 ILE A 278 1 O ASP A 275 N ILE A 51 SHEET 1 AA6 3 ILE A 58 ASP A 60 0 SHEET 2 AA6 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 SER A 266 ARG A 269 1 O MET A 268 N PHE A 87 SHEET 1 AA7 5 TYR A 100 ASP A 101 0 SHEET 2 AA7 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA7 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA7 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AA7 5 PHE A 120 THR A 122 -1 N ILE A 121 O TYR A 257 SHEET 1 AA8 6 TYR A 100 ASP A 101 0 SHEET 2 AA8 6 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA8 6 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA8 6 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 6 LEU A 151 LYS A 156 -1 N ASN A 152 O ALA A 253 SHEET 6 AA8 6 VAL A 130 GLY A 134 -1 N GLY A 134 O TRP A 153 SHEET 1 AA9 2 SER A 136 LYS A 140 0 SHEET 2 AA9 2 SER A 145 GLY A 146 -1 O GLY A 146 N SER A 136 SHEET 1 AB1 4 LEU A 164 PRO A 169 0 SHEET 2 AB1 4 VAL A 242 GLY A 249 -1 O SER A 247 N LEU A 164 SHEET 3 AB1 4 ARG A 201 SER A 205 -1 N THR A 203 O ASN A 246 SHEET 4 AB1 4 GLN A 210 ILE A 213 -1 O ILE A 213 N VAL A 202 SHEET 1 AB2 2 CYS A 281 THR A 283 0 SHEET 2 AB2 2 GLY A 286 ILE A 288 -1 O GLY A 286 N THR A 283 SHEET 1 AB3 2 GLY A 303 ALA A 304 0 SHEET 2 AB3 2 GLU A 390 LYS A 391 -1 O LYS A 391 N GLY A 303 SSBOND 1 CYS A 14 CYS A 466 1555 1555 2.03 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.04 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.04 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.04 SSBOND 6 CYS A 473 CYS A 477 1555 1555 2.05 LINK ND2 ASN A 22 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 38 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 81 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 165 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 285 C1 NAG E 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CISPEP 1 ASN A 54 PRO A 55 0 7.23 CRYST1 154.094 154.094 154.094 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006490 0.00000