HEADER PLANT PROTEIN 18-NOV-21 7QB6 TITLE CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN COMPLEX TITLE 2 WITH 3-CARBOXYBENZOPHENONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULIN-13; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MTN13,PATHOGENESIS-RELATED PR10-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEDICAGO TRUNCATULA; SOURCE 3 ORGANISM_COMMON: BARREL MEDIC, MEDICAGO TRIBULOIDES; SOURCE 4 ORGANISM_TAXID: 3880; SOURCE 5 GENE: N13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -GOLD KEYWDS PATOGENESIS RELATED PROTEIN, PR-10 PROTEIN, NODULIN-13, CYTOKININ KEYWDS 2 SIGNALING PATHWAY, NODULATION, 3-CARBOXYBENZOPHENONE, KEYWDS 3 PHOTOOXIDATION, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GRZECHOWIAK,M.IGNASIAK,K.NOWICKA-BAUER,B.MARCINIAK,M.JASKOLSKI REVDAT 3 07-FEB-24 7QB6 1 REMARK REVDAT 2 01-MAR-23 7QB6 1 JRNL REVDAT 1 26-OCT-22 7QB6 0 JRNL AUTH M.IGNASIAK-KCIUK,K.NOWICKA-BAUER,M.GRZECHOWIAK,T.RAVNSBORG, JRNL AUTH 2 K.FRACKOWIAK,O.N.JENSEN,M.JASKOLSKI,B.MARCINIAK JRNL TITL DOES THE PRESENCE OF GROUND STATE COMPLEX BETWEEN A PR-10 JRNL TITL 2 PROTEIN AND A SENSITIZER AFFECT THE MECHANISM OF SENSITIZED JRNL TITL 3 PHOTO-OXIDATION? JRNL REF FREE RADIC BIOL MED V. 198 27 2023 JRNL REFN ESSN 1873-4596 JRNL PMID 36738800 JRNL DOI 10.1016/J.FREERADBIOMED.2023.01.022 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.RUSZKOWSKI,K.SZPOTKOWSKI,M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL THE LANDSCAPE OF CYTOKININ BINDING BY A PLANT NODULIN. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 69 2365 2013 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 24311578 REMARK 1 DOI 10.1107/S0907444913021975 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.1_3865 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9200 - 4.8100 1.00 2951 149 0.1665 0.2033 REMARK 3 2 4.8100 - 3.8200 1.00 2818 143 0.1683 0.1777 REMARK 3 3 3.8200 - 3.3400 1.00 2785 140 0.1989 0.2341 REMARK 3 4 3.3400 - 3.0400 1.00 2757 138 0.2446 0.2745 REMARK 3 5 3.0400 - 2.8200 1.00 2770 140 0.2740 0.3254 REMARK 3 6 2.8200 - 2.6600 1.00 2741 138 0.3109 0.3119 REMARK 3 7 2.6600 - 2.5200 0.99 2712 136 0.3101 0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.359 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2658 REMARK 3 ANGLE : 1.002 3593 REMARK 3 CHIRALITY : 0.057 394 REMARK 3 PLANARITY : 0.006 466 REMARK 3 DIHEDRAL : 23.013 985 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0904 67.3320 81.1190 REMARK 3 T TENSOR REMARK 3 T11: 0.5769 T22: 0.9371 REMARK 3 T33: 0.7437 T12: -0.0478 REMARK 3 T13: -0.1080 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 5.5586 L22: 2.5316 REMARK 3 L33: 6.0917 L12: 1.9830 REMARK 3 L13: -5.2871 L23: -3.4028 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: -0.4104 S13: 0.1623 REMARK 3 S21: -0.1851 S22: -0.0439 S23: -0.0202 REMARK 3 S31: -0.4370 S32: 1.0260 S33: -0.3012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6898 49.1029 92.6664 REMARK 3 T TENSOR REMARK 3 T11: 0.4347 T22: 0.8164 REMARK 3 T33: 0.6608 T12: 0.0546 REMARK 3 T13: -0.0059 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 6.6417 L22: 4.1183 REMARK 3 L33: 3.7945 L12: 0.7493 REMARK 3 L13: -2.0241 L23: -0.5363 REMARK 3 S TENSOR REMARK 3 S11: -0.2482 S12: -0.4231 S13: -0.7178 REMARK 3 S21: 0.0670 S22: 0.1510 S23: -0.4935 REMARK 3 S31: 0.1891 S32: 0.3497 S33: 0.2386 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9446 55.3541 75.1527 REMARK 3 T TENSOR REMARK 3 T11: 1.0225 T22: 1.4104 REMARK 3 T33: 1.1570 T12: -0.1345 REMARK 3 T13: -0.0429 T23: -0.2697 REMARK 3 L TENSOR REMARK 3 L11: 4.3483 L22: 5.2816 REMARK 3 L33: 7.5528 L12: 4.4581 REMARK 3 L13: -3.4096 L23: -4.1449 REMARK 3 S TENSOR REMARK 3 S11: -1.1328 S12: 3.0752 S13: -2.1337 REMARK 3 S21: -1.8363 S22: 0.5468 S23: 0.6571 REMARK 3 S31: 0.4532 S32: -1.6419 S33: 0.5195 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0749 62.9472 92.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.4024 T22: 0.7457 REMARK 3 T33: 0.5812 T12: -0.0326 REMARK 3 T13: -0.1044 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 6.2448 L22: 3.8287 REMARK 3 L33: 9.2436 L12: -1.9893 REMARK 3 L13: -7.1535 L23: 1.4168 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: -0.5680 S13: 0.3271 REMARK 3 S21: 0.3145 S22: 0.2903 S23: -0.2012 REMARK 3 S31: -0.2419 S32: 0.9303 S33: -0.2651 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5834 66.5103 69.6034 REMARK 3 T TENSOR REMARK 3 T11: 1.5977 T22: 2.1044 REMARK 3 T33: 0.9904 T12: -0.1607 REMARK 3 T13: -0.0377 T23: 0.2242 REMARK 3 L TENSOR REMARK 3 L11: 1.1509 L22: 0.3563 REMARK 3 L33: 0.6783 L12: 0.6315 REMARK 3 L13: -0.6387 L23: -0.3701 REMARK 3 S TENSOR REMARK 3 S11: -0.5094 S12: 2.7897 S13: -0.6484 REMARK 3 S21: -1.3977 S22: 0.8081 S23: 0.0296 REMARK 3 S31: -0.7385 S32: -1.5926 S33: -0.6358 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7440 55.9549 94.2887 REMARK 3 T TENSOR REMARK 3 T11: 0.3517 T22: 0.8248 REMARK 3 T33: 0.6217 T12: 0.0693 REMARK 3 T13: -0.0399 T23: -0.0972 REMARK 3 L TENSOR REMARK 3 L11: 5.1462 L22: 6.8775 REMARK 3 L33: 9.8157 L12: 3.5221 REMARK 3 L13: -5.0710 L23: -2.6630 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.3501 S13: 0.0015 REMARK 3 S21: -0.1294 S22: -0.2463 S23: 0.0533 REMARK 3 S31: -0.0248 S32: 0.2545 S33: 0.2938 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0487 77.1598 73.1155 REMARK 3 T TENSOR REMARK 3 T11: 0.7795 T22: 1.0758 REMARK 3 T33: 0.6069 T12: -0.1174 REMARK 3 T13: -0.1716 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 4.3127 L22: 2.7247 REMARK 3 L33: 4.0929 L12: 0.3946 REMARK 3 L13: -2.1525 L23: -0.5849 REMARK 3 S TENSOR REMARK 3 S11: -0.1572 S12: -0.3368 S13: -0.4415 REMARK 3 S21: -0.1330 S22: -0.2175 S23: -0.3865 REMARK 3 S31: -0.3834 S32: 0.9756 S33: 0.2360 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0448 91.7387 72.2079 REMARK 3 T TENSOR REMARK 3 T11: 1.2276 T22: 0.9950 REMARK 3 T33: 0.7247 T12: -0.3302 REMARK 3 T13: -0.1895 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.7928 L22: 4.4505 REMARK 3 L33: 5.5708 L12: -0.8862 REMARK 3 L13: -1.7286 L23: -0.0250 REMARK 3 S TENSOR REMARK 3 S11: 0.2267 S12: -0.3331 S13: 0.3019 REMARK 3 S21: 0.2568 S22: -0.2371 S23: -0.3675 REMARK 3 S31: -1.4670 S32: 0.9736 S33: 0.0263 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2062 79.2365 72.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.8123 T22: 0.9590 REMARK 3 T33: 0.5160 T12: -0.0566 REMARK 3 T13: -0.1618 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 3.5318 L22: 6.2053 REMARK 3 L33: 6.4298 L12: 1.8187 REMARK 3 L13: -2.3885 L23: -1.1199 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: 0.3499 S13: 0.4094 REMARK 3 S21: 0.1313 S22: 0.0887 S23: 0.3400 REMARK 3 S31: -0.9822 S32: -0.0664 S33: 0.0144 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7197 81.8882 64.5535 REMARK 3 T TENSOR REMARK 3 T11: 0.9624 T22: 1.0004 REMARK 3 T33: 0.7572 T12: -0.0077 REMARK 3 T13: -0.1613 T23: 0.1735 REMARK 3 L TENSOR REMARK 3 L11: 8.1711 L22: 4.7093 REMARK 3 L33: 8.7804 L12: 1.8505 REMARK 3 L13: -5.5274 L23: -2.3338 REMARK 3 S TENSOR REMARK 3 S11: -0.2045 S12: 1.6649 S13: 0.6307 REMARK 3 S21: -0.2192 S22: 0.5126 S23: 0.5099 REMARK 3 S31: -0.5093 S32: -0.2166 S33: -0.1311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid -4 through 159) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid -4 through 159) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292117829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 19.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 26.70 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM MALONATE, PROTEIN 10 REMARK 280 MG/ML, 3-CARBOXYBENZOPHENONE, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.40150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.69300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.84650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.40150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 167.53950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 167.53950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.40150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.84650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 51.40150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.69300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.40150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 111.69300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.40150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 167.53950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.84650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.40150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.84650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 167.53950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.40150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.40150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 111.69300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 LYS A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 ASN A 163 REMARK 465 GLY B -5 REMARK 465 LYS B 160 REMARK 465 ASP B 161 REMARK 465 SER B 162 REMARK 465 ASN B 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A -3 60.86 67.09 REMARK 500 PHE A 38 -56.13 -123.99 REMARK 500 ASP A 71 -64.76 -103.51 REMARK 500 GLU A 110 13.32 57.02 REMARK 500 ASP A 126 -74.35 -116.44 REMARK 500 ASP B -3 61.24 70.01 REMARK 500 PHE B 38 -56.89 -122.72 REMARK 500 ASP B 71 -63.33 -106.48 REMARK 500 ILE B 127 72.46 -112.47 REMARK 500 TYR B 158 12.26 -69.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JHI RELATED DB: PDB REMARK 900 4JHI CONTAINS THE SAME PROTEI COMPLEXED WITH N6-BENZYLADENINE REMARK 900 RELATED ID: 4JHH RELATED DB: PDB REMARK 900 4JHH CONTAINS THE SAME PROTEI COMPLEXED WITH KINETIN REMARK 900 RELATED ID: 4JHG RELATED DB: PDB REMARK 900 4JHG CONTAINS THE SAME PROTEI COMPLEXED WITH TRANS-ZEATIN REMARK 900 RELATED ID: 4GY9 RELATED DB: PDB REMARK 900 4GY9 CONTAINS THE SAME PROTEI COMPLEXED WITH N6-ISOPENTENYLADENINE DBREF 7QB6 A 1 163 UNP P93330 NOD13_MEDTR 1 163 DBREF 7QB6 B 1 163 UNP P93330 NOD13_MEDTR 1 163 SEQADV 7QB6 GLY A -5 UNP P93330 EXPRESSION TAG SEQADV 7QB6 ILE A -4 UNP P93330 EXPRESSION TAG SEQADV 7QB6 ASP A -3 UNP P93330 EXPRESSION TAG SEQADV 7QB6 PRO A -2 UNP P93330 EXPRESSION TAG SEQADV 7QB6 PHE A -1 UNP P93330 EXPRESSION TAG SEQADV 7QB6 THR A 0 UNP P93330 EXPRESSION TAG SEQADV 7QB6 GLY B -5 UNP P93330 EXPRESSION TAG SEQADV 7QB6 ILE B -4 UNP P93330 EXPRESSION TAG SEQADV 7QB6 ASP B -3 UNP P93330 EXPRESSION TAG SEQADV 7QB6 PRO B -2 UNP P93330 EXPRESSION TAG SEQADV 7QB6 PHE B -1 UNP P93330 EXPRESSION TAG SEQADV 7QB6 THR B 0 UNP P93330 EXPRESSION TAG SEQRES 1 A 169 GLY ILE ASP PRO PHE THR MET GLY VAL ILE THR SER GLU SEQRES 2 A 169 SER GLU TYR VAL SER SER LEU SER ALA GLU LYS LEU TYR SEQRES 3 A 169 ARG GLY ILE VAL GLU ASP GLY ASN ILE ILE TYR PRO LYS SEQRES 4 A 169 ALA LEU PRO ARG PHE ILE GLU LYS ALA GLU THR LEU GLU SEQRES 5 A 169 GLY ASP GLY GLY PRO GLY THR ILE LYS LYS LEU THR PHE SEQRES 6 A 169 VAL GLY ASP PHE GLY SER THR LYS GLN HIS ILE ASP MET SEQRES 7 A 169 VAL ASP ARG GLU ASN CYS ALA TYR THR TYR SER VAL TYR SEQRES 8 A 169 GLU GLY ILE ALA LEU SER ASP GLN PRO LEU GLU LYS ILE SEQRES 9 A 169 VAL PHE GLU PHE LYS LEU VAL PRO THR PRO GLU GLU GLY SEQRES 10 A 169 CYS ILE VAL LYS SER THR THR LYS TYR TYR THR LYS GLY SEQRES 11 A 169 ASP ASP ILE GLU LEU SER LYS ASP TYR LEU GLU ALA GLY SEQRES 12 A 169 ILE GLU ARG PHE GLU GLY PHE THR LYS ALA VAL GLU SER SEQRES 13 A 169 PHE LEU LEU ALA ASN PRO ASP TYR ASN LYS ASP SER ASN SEQRES 1 B 169 GLY ILE ASP PRO PHE THR MET GLY VAL ILE THR SER GLU SEQRES 2 B 169 SER GLU TYR VAL SER SER LEU SER ALA GLU LYS LEU TYR SEQRES 3 B 169 ARG GLY ILE VAL GLU ASP GLY ASN ILE ILE TYR PRO LYS SEQRES 4 B 169 ALA LEU PRO ARG PHE ILE GLU LYS ALA GLU THR LEU GLU SEQRES 5 B 169 GLY ASP GLY GLY PRO GLY THR ILE LYS LYS LEU THR PHE SEQRES 6 B 169 VAL GLY ASP PHE GLY SER THR LYS GLN HIS ILE ASP MET SEQRES 7 B 169 VAL ASP ARG GLU ASN CYS ALA TYR THR TYR SER VAL TYR SEQRES 8 B 169 GLU GLY ILE ALA LEU SER ASP GLN PRO LEU GLU LYS ILE SEQRES 9 B 169 VAL PHE GLU PHE LYS LEU VAL PRO THR PRO GLU GLU GLY SEQRES 10 B 169 CYS ILE VAL LYS SER THR THR LYS TYR TYR THR LYS GLY SEQRES 11 B 169 ASP ASP ILE GLU LEU SER LYS ASP TYR LEU GLU ALA GLY SEQRES 12 B 169 ILE GLU ARG PHE GLU GLY PHE THR LYS ALA VAL GLU SER SEQRES 13 B 169 PHE LEU LEU ALA ASN PRO ASP TYR ASN LYS ASP SER ASN HET A8I A 201 17 HET MLI B 201 7 HETNAM A8I 3-BENZOYLBENZOIC ACID HETNAM MLI MALONATE ION HETSYN A8I 3-(PHENYLCARBONYL)BENZOIC ACID; BENZOPHENONE-3- HETSYN 2 A8I CARBOXYLIC ACID; 3-CARBOXYBENZOPHENONE FORMUL 3 A8I C14 H10 O3 FORMUL 4 MLI C3 H2 O4 2- FORMUL 5 HOH *16(H2 O) HELIX 1 AA1 SER A 15 VAL A 24 1 10 HELIX 2 AA2 ASP A 26 LEU A 35 1 10 HELIX 3 AA3 SER A 130 ASN A 155 1 26 HELIX 4 AA4 SER B 15 VAL B 24 1 10 HELIX 5 AA5 ASP B 26 LEU B 35 1 10 HELIX 6 AA6 SER B 130 ASN B 155 1 26 SHEET 1 AA114 ILE A 39 GLU A 46 0 SHEET 2 AA114 ILE A 54 PHE A 59 -1 O THR A 58 N LYS A 41 SHEET 3 AA114 SER A 65 ASP A 74 -1 O THR A 66 N LEU A 57 SHEET 4 AA114 ALA A 79 VAL A 84 -1 O THR A 81 N ASP A 71 SHEET 5 AA114 LYS A 97 PRO A 106 -1 O PHE A 100 N TYR A 82 SHEET 6 AA114 CYS A 112 LYS A 123 -1 O LYS A 115 N LYS A 103 SHEET 7 AA114 PHE A -1 SER A 12 -1 N TYR A 10 O VAL A 114 SHEET 8 AA114 PHE B -1 SER B 12 -1 O THR B 5 N MET A 1 SHEET 9 AA114 CYS B 112 LYS B 123 -1 O VAL B 114 N TYR B 10 SHEET 10 AA114 LYS B 97 PRO B 106 -1 N VAL B 105 O ILE B 113 SHEET 11 AA114 ALA B 79 VAL B 84 -1 N TYR B 82 O PHE B 100 SHEET 12 AA114 SER B 65 ASP B 74 -1 N ASP B 71 O THR B 81 SHEET 13 AA114 ILE B 54 PHE B 59 -1 N LYS B 55 O GLN B 68 SHEET 14 AA114 ILE B 39 GLU B 46 -1 N GLU B 43 O LYS B 56 CRYST1 102.803 102.803 223.386 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004477 0.00000 MTRIX1 1 0.120591 -0.044960 0.991684 -57.50702 1 MTRIX2 1 -0.002813 -0.998985 -0.044949 143.79315 1 MTRIX3 1 0.992698 0.002631 -0.120595 68.26590 1