HEADER METAL BINDING PROTEIN 19-NOV-21 7QBS TITLE B12-DEPENDENT RADICAL SAM METHYLTRANSFERASE, MMP10 WITH [4FE-4S] TITLE 2 CLUSTER, COBALAMIN, S-ADENOSYL-L-METHIONINE, AND PEPTIDE BOUND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL COENZYME M REDUCTASE-ARGININE METHYLTRANSFERASE COMPND 3 MMP10; COMPND 4 CHAIN: A; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE FROM METHYL-COENZYME M REDUCTASE SUBUNIT ALPHA FROM COMPND 9 METHANOSARCINA ACETIVORANS; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA ACETIVORANS; SOURCE 3 ORGANISM_TAXID: 2214; SOURCE 4 GENE: MMP10, HA338_00275; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: METHANOSARCINA ACETIVORANS; SOURCE 10 ORGANISM_TAXID: 2214 KEYWDS RADICAL SAM, B12 BINDING, METHYLTRANSFERASE, SP3 CARBON METHYLATION, KEYWDS 2 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.BERNARDO-GARCIA,C.D.FYFE,L.M.G.CHAVAS,P.LEGRAND,A.BENJDIA,O.BERTEAU REVDAT 3 23-FEB-22 7QBS 1 JRNL REVDAT 2 16-FEB-22 7QBS 1 JRNL REVDAT 1 02-FEB-22 7QBS 0 JRNL AUTH C.D.FYFE,N.BERNARDO-GARCIA,L.FRADALE,S.GRIMALDI,A.GUILLOT, JRNL AUTH 2 C.BREWEE,L.M.G.CHAVAS,P.LEGRAND,A.BENJDIA,O.BERTEAU JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF A B 12 -DEPENDENT RADICAL SAM JRNL TITL 2 METHYLTRANSFERASE. JRNL REF NATURE V. 602 336 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35110733 JRNL DOI 10.1038/S41586-021-04355-9 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (16-JUL-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 479 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3683 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 458 REMARK 3 BIN R VALUE (WORKING SET) : 0.3628 REMARK 3 BIN FREE R VALUE : 0.4914 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.38 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.03300 REMARK 3 B22 (A**2) : -2.03300 REMARK 3 B33 (A**2) : 4.06590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.264 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.211 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.258 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.211 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3441 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4695 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1237 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 590 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3441 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 458 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2861 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|257 A|502 - A|503 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.2724 30.4378 22.7796 REMARK 3 T TENSOR REMARK 3 T11: -0.0736 T22: -0.1141 REMARK 3 T33: -0.0803 T12: 0.0089 REMARK 3 T13: -0.0348 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.6982 L22: 1.5737 REMARK 3 L33: 2.1490 L12: -0.0364 REMARK 3 L13: 0.3461 L23: 0.3132 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.0675 S13: 0.0555 REMARK 3 S21: 0.0906 S22: -0.0085 S23: 0.0208 REMARK 3 S31: -0.2188 S32: 0.0874 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|258 - A|501 A|504 B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -28.9332 30.4760 0.7911 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: -0.0681 REMARK 3 T33: -0.0441 T12: 0.0845 REMARK 3 T13: -0.0590 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 2.0370 L22: 2.3774 REMARK 3 L33: 1.8374 L12: 0.0702 REMARK 3 L13: 1.4075 L23: -0.1405 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: 0.0749 S13: 0.1770 REMARK 3 S21: -0.4072 S22: -0.1248 S23: 0.3385 REMARK 3 S31: -0.2449 S32: -0.1008 S33: 0.1850 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857, 1.72200 REMARK 200 MONOCHROMATOR : SI(111) SINGLE-CRYSTAL CHANNEL REMARK 200 -CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.327 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXCD, SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% (W/V) PEG8000, 100 MM TRIS, PH 8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.28000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.28000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.28000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 ALA A -23 REMARK 465 SER A -22 REMARK 465 TRP A -21 REMARK 465 SER A -20 REMARK 465 HIS A -19 REMARK 465 PRO A -18 REMARK 465 GLN A -17 REMARK 465 PHE A -16 REMARK 465 GLU A -15 REMARK 465 LYS A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLU B 0 REMARK 465 GLY B 9 REMARK 465 PRO B 10 REMARK 465 ASN B 11 REMARK 465 GLU B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 104.28 -19.38 REMARK 500 PHE A 143 -65.16 70.96 REMARK 500 ALA A 330 44.68 -103.27 REMARK 500 SER A 374 -157.74 -149.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 SF4 A 501 S1 115.4 REMARK 620 3 SF4 A 501 S2 109.9 104.7 REMARK 620 4 SF4 A 501 S3 117.9 103.7 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 SF4 A 501 S1 113.9 REMARK 620 3 SF4 A 501 S3 116.2 104.6 REMARK 620 4 SF4 A 501 S4 111.7 103.9 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 SF4 A 501 S2 125.4 REMARK 620 3 SF4 A 501 S3 101.9 103.2 REMARK 620 4 SF4 A 501 S4 114.6 104.7 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 35 SG REMARK 620 2 CYS A 38 SG 124.3 REMARK 620 3 CYS A 45 SG 96.6 116.5 REMARK 620 4 CYS A 48 SG 111.6 96.2 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 118 O REMARK 620 2 PHE A 121 O 82.7 REMARK 620 3 ASP A 156 OD1 98.7 161.7 REMARK 620 4 GLU A 158 O 149.4 115.4 71.9 REMARK 620 5 SER A 162 OG 75.2 120.9 76.8 74.3 REMARK 620 6 HOH A 669 O 109.0 83.5 78.8 97.8 155.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 503 OXT REMARK 620 2 SF4 A 501 S1 87.1 REMARK 620 3 SF4 A 501 S2 149.0 104.5 REMARK 620 4 SF4 A 501 S4 100.8 105.5 103.4 REMARK 620 5 SAM A 503 N 68.8 82.9 84.0 166.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QBT RELATED DB: PDB REMARK 900 RELATED ID: 7QBU RELATED DB: PDB REMARK 900 RELATED ID: 7QBV RELATED DB: PDB DBREF1 7QBS A 1 411 UNP A0A832SFM5_9EURY DBREF2 7QBS A A0A832SFM5 1 411 DBREF 7QBS B 0 12 PDB 7QBS 7QBS 0 12 SEQADV 7QBS MET A -24 UNP A0A832SFM INITIATING METHIONINE SEQADV 7QBS ALA A -23 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS SER A -22 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS TRP A -21 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS SER A -20 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS HIS A -19 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS PRO A -18 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLN A -17 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS PHE A -16 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLU A -15 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS LYS A -14 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS SER A -13 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLY A -12 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLY A -11 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLY A -10 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLY A -9 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLY A -8 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLU A -7 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS ASN A -6 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS LEU A -5 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS TYR A -4 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS PHE A -3 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLN A -2 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS GLY A -1 UNP A0A832SFM EXPRESSION TAG SEQADV 7QBS HIS A 0 UNP A0A832SFM EXPRESSION TAG SEQRES 1 A 436 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS SER GLY SEQRES 2 A 436 GLY GLY GLY GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 A 436 GLU VAL VAL VAL ASP VAL GLY GLY ASN PRO GLY VAL ASP SEQRES 4 A 436 CYS LYS GLY PHE CYS LYS TYR CYS TYR PHE LYS LYS VAL SEQRES 5 A 436 LYS ASP ILE GLN PRO LEU GLY CYS LYS TYR CYS LEU PRO SEQRES 6 A 436 PHE LYS LYS GLY CYS ASP TYR CYS THR ARG SER VAL LYS SEQRES 7 A 436 GLU SER TYR SER GLY PHE LYS SER LEU GLN MET VAL LEU SEQRES 8 A 436 GLU GLU THR ALA ASN LYS LEU TYR PHE THR SER GLY GLU SEQRES 9 A 436 VAL LYS LYS PHE THR VAL SER GLY GLY GLY ASP LEU SER SEQRES 10 A 436 CYS TYR PRO GLU LEU LYS SER LEU ILE THR PHE LEU SER SEQRES 11 A 436 GLN PHE ASN THR PRO ILE HIS LEU GLY TYR THR SER GLY SEQRES 12 A 436 LYS GLY PHE SER LYS PRO ASP ASP ALA LEU PHE TYR ILE SEQRES 13 A 436 ASP ASN GLY VAL THR GLU VAL SER PHE THR VAL PHE ALA SEQRES 14 A 436 THR ASP PRO ALA LEU ARG ALA GLU TYR MET LYS ASP PRO SEQRES 15 A 436 GLU PRO GLU ALA SER ILE GLN VAL LEU ARG ASP PHE CYS SEQRES 16 A 436 THR HIS CYS GLU VAL TYR GLY ALA ILE VAL LEU LEU PRO SEQRES 17 A 436 GLY ILE ASN ASP GLY GLU VAL LEU GLU LYS THR LEU CYS SEQRES 18 A 436 ASP LEU GLU ASN MET GLY ALA LYS GLY ALA ILE LEU MET SEQRES 19 A 436 ARG PHE ALA ASN PHE GLN GLU ASN GLY LEU ILE LEU ASN SEQRES 20 A 436 ASN SER PRO ILE ILE PRO GLY ILE THR PRO HIS THR VAL SEQRES 21 A 436 SER GLU PHE THR GLU ILE VAL ARG SER SER ALA GLU LYS SEQRES 22 A 436 HIS PRO SER ILE ARG ILE THR GLY THR PRO LEU GLU ASP SEQRES 23 A 436 PRO LEU ILE GLY SER PRO PHE ALA ILE ARG ASN VAL PRO SEQRES 24 A 436 GLU ALA LEU LEU LYS LEU PRO ARG VAL SER LYS LYS ALA SEQRES 25 A 436 THR ILE ILE THR GLY GLN VAL ALA ALA SER ARG LEU THR SEQRES 26 A 436 GLU ILE PHE GLU ALA LEU GLY GLY THR VAL ASN VAL ILE SEQRES 27 A 436 PRO VAL LYS LYS ASP ILE GLY CYS LEU ILE THR ILE ASP SEQRES 28 A 436 ASP PHE LYS ALA LEU ASP LEU SER GLU VAL THR GLU THR SEQRES 29 A 436 VAL PHE ILE PRO GLY ARG ALA PHE VAL HIS ASP MET GLU SEQRES 30 A 436 ILE LYS GLU ALA LEU ARG ARG ASP GLY VAL ASP ARG ILE SEQRES 31 A 436 VAL ARG ARG GLY PRO GLU ARG LEU SER VAL ASP GLY GLU SEQRES 32 A 436 MET SER ILE GLY MET THR ARG GLU GLU VAL LEU GLU LEU SEQRES 33 A 436 GLU VAL GLU ASN PHE THR GLU LEU ILE GLY GLN ILE ASN SEQRES 34 A 436 SER LEU GLY LEU PRO LEU GLU SEQRES 1 B 13 GLU MET LEU PRO ALA ARG ARG ALA ARG GLY PRO ASN GLU HET SF4 A 501 8 HET FE A 502 1 HET SAM A 503 27 HET COB A 504 92 HET NA A 505 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FE FE (III) ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM COB CO-METHYLCOBALAMIN HETNAM NA SODIUM ION FORMUL 3 SF4 FE4 S4 FORMUL 4 FE FE 3+ FORMUL 5 SAM C15 H22 N6 O5 S FORMUL 6 COB C63 H91 CO N13 O14 P 1+ FORMUL 7 NA NA 1+ FORMUL 8 HOH *210(H2 O) HELIX 1 AA1 GLY A 12 LYS A 16 5 5 HELIX 2 AA2 ARG A 50 GLU A 54 5 5 HELIX 3 AA3 SER A 61 PHE A 75 1 15 HELIX 4 AA4 ASP A 90 TYR A 94 5 5 HELIX 5 AA5 GLU A 96 GLN A 106 1 11 HELIX 6 AA6 ASP A 126 ASP A 132 1 7 HELIX 7 AA7 ASP A 146 MET A 154 1 9 HELIX 8 AA8 GLU A 158 CYS A 173 1 16 HELIX 9 AA9 ASP A 187 GLY A 202 1 16 HELIX 10 AB1 PHE A 214 GLY A 218 5 5 HELIX 11 AB2 THR A 234 HIS A 249 1 16 HELIX 12 AB3 PHE A 268 ASN A 272 5 5 HELIX 13 AB4 VAL A 273 LEU A 278 1 6 HELIX 14 AB5 ALA A 295 LEU A 306 1 12 HELIX 15 AB6 ILE A 319 ILE A 323 5 5 HELIX 16 AB7 THR A 324 LYS A 329 5 6 HELIX 17 AB8 ASP A 332 VAL A 336 5 5 HELIX 18 AB9 HIS A 349 LEU A 357 1 9 HELIX 19 AC1 ASP A 376 ILE A 381 1 6 HELIX 20 AC2 THR A 384 GLY A 407 1 24 SHEET 1 AA1 7 GLU A 2 ASP A 6 0 SHEET 2 AA1 7 LYS A 82 SER A 86 1 O THR A 84 N VAL A 5 SHEET 3 AA1 7 ILE A 111 THR A 116 1 O HIS A 112 N PHE A 83 SHEET 4 AA1 7 VAL A 135 THR A 141 1 O GLU A 137 N LEU A 113 SHEET 5 AA1 7 GLU A 174 LEU A 181 1 O ALA A 178 N PHE A 140 SHEET 6 AA1 7 GLY A 205 ARG A 210 1 O MET A 209 N ILE A 179 SHEET 7 AA1 7 ARG A 253 THR A 257 1 O THR A 255 N LEU A 208 SHEET 1 AA2 4 VAL A 310 PRO A 314 0 SHEET 2 AA2 4 ALA A 287 THR A 291 1 N ILE A 289 O ILE A 313 SHEET 3 AA2 4 THR A 339 ILE A 342 1 O PHE A 341 N ILE A 290 SHEET 4 AA2 4 ILE A 365 ARG A 368 1 O ILE A 365 N VAL A 340 LINK SG CYS A 15 FE4 SF4 A 501 1555 1555 2.20 LINK SG CYS A 19 FE2 SF4 A 501 1555 1555 2.37 LINK SG CYS A 22 FE1 SF4 A 501 1555 1555 2.27 LINK SG CYS A 35 FE FE A 502 1555 1555 2.40 LINK SG CYS A 38 FE FE A 502 1555 1555 2.30 LINK SG CYS A 45 FE FE A 502 1555 1555 2.53 LINK SG CYS A 48 FE FE A 502 1555 1555 2.37 LINK O GLY A 118 NA NA A 505 1555 1555 2.79 LINK O PHE A 121 NA NA A 505 1555 1555 2.31 LINK OD1 ASP A 156 NA NA A 505 1555 1555 2.89 LINK O GLU A 158 NA NA A 505 1555 1555 3.11 LINK OG SER A 162 NA NA A 505 1555 1555 2.38 LINK FE3 SF4 A 501 OXT SAM A 503 1555 1555 2.35 LINK FE3 SF4 A 501 N SAM A 503 1555 1555 2.66 LINK NA NA A 505 O HOH A 669 1555 1555 2.42 CISPEP 1 SER A 224 PRO A 225 0 -1.16 CISPEP 2 THR A 257 PRO A 258 0 9.62 CISPEP 3 LEU A 259 GLU A 260 0 -5.66 CISPEP 4 SER A 266 PRO A 267 0 -0.21 CRYST1 119.290 119.290 68.560 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008383 0.004840 0.000000 0.00000 SCALE2 0.000000 0.009680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014586 0.00000