HEADER HYDROLASE 25-NOV-21 7QCX TITLE TWO-STATE LIQUID NMR STRUCTURE OF A PDZ2 DOMAIN FROM HPTP1E, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAS-ASSOCIATED PROTEIN-TYROSINE PHOSPHATASE 1,FAP-1,PTP-BAS, COMPND 5 PROTEIN-TYROSINE PHOSPHATASE 1E,PTP-E1,HPTPE1,PROTEIN-TYROSINE COMPND 6 PHOSPHATASE PTPL1; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN13, PNP1, PTP1E, PTPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PROTEIN-PROTEIN RECOGNITION DOMAIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR D.ASHKINADZE,H.KADAVATH,C.CHI,M.FRIEDMANN,D.STROTZ,P.KUMARI,M.MINGES, AUTHOR 2 R.CADALBERT,S.KOENIGL,P.GUENTERT,B.VOEGELI,R.RIEK REVDAT 3 19-JUN-24 7QCX 1 REMARK REVDAT 2 02-NOV-22 7QCX 1 JRNL REVDAT 1 07-SEP-22 7QCX 0 JRNL AUTH D.ASHKINADZE,H.KADAVATH,A.POKHARNA,C.N.CHI,M.FRIEDMANN, JRNL AUTH 2 D.STROTZ,P.KUMARI,M.MINGES,R.CADALBERT,S.KONIGL,P.GUNTERT, JRNL AUTH 3 B.VOGELI,R.RIEK JRNL TITL ATOMIC RESOLUTION PROTEIN ALLOSTERY FROM THE MULTI-STATE JRNL TITL 2 STRUCTURE OF A PDZ DOMAIN. JRNL REF NAT COMMUN V. 13 6232 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36266302 JRNL DOI 10.1038/S41467-022-33687-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119401. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-100% 13C; U-100% 15N] REMARK 210 PDZ2 DOMAIN FROM HPTP1E, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D HN(COCA) REMARK 210 CB; 2D 1H-13C HSQC; 2D 1H-15N REMARK 210 HSQC; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 87.19 -69.76 REMARK 500 1 ASN A 27 34.13 -153.56 REMARK 500 1 SER A 29 32.92 -176.06 REMARK 500 1 HIS A 32 84.04 -165.74 REMARK 500 1 ILE A 41 78.95 -110.88 REMARK 500 1 PRO A 42 72.05 -69.72 REMARK 500 1 GLN A 43 41.74 -152.48 REMARK 500 1 GLU A 67 104.52 -56.93 REMARK 500 1 ALA A 69 87.89 179.92 REMARK 500 1 THR A 70 76.26 -153.72 REMARK 500 1 LYS A 91 104.98 -55.84 REMARK 500 1 SER A 94 72.87 179.65 REMARK 500 1 PRO A 95 77.94 -69.73 REMARK 500 2 PRO A 3 95.26 -69.74 REMARK 500 2 GLU A 10 39.68 -157.47 REMARK 500 2 ILE A 41 109.84 -45.89 REMARK 500 2 GLU A 47 -63.36 -178.42 REMARK 500 2 ARG A 51 28.05 -144.72 REMARK 500 2 ARG A 57 141.89 67.79 REMARK 500 2 ALA A 60 110.87 -178.77 REMARK 500 2 GLU A 90 -169.19 -101.78 REMARK 500 2 SER A 94 75.60 -113.16 REMARK 500 2 PRO A 95 78.06 -69.78 REMARK 500 3 PRO A 3 77.15 -69.73 REMARK 500 3 SER A 29 32.37 -95.99 REMARK 500 3 SER A 48 -74.55 -68.69 REMARK 500 3 ASP A 56 -40.44 -154.26 REMARK 500 3 ARG A 57 110.06 64.61 REMARK 500 3 GLU A 67 87.61 -65.82 REMARK 500 3 ALA A 69 87.60 49.57 REMARK 500 3 THR A 70 88.65 -163.50 REMARK 500 3 ASN A 80 49.79 -98.79 REMARK 500 3 GLU A 90 -169.82 -121.96 REMARK 500 3 GLN A 93 -167.43 -101.44 REMARK 500 3 PRO A 95 78.03 -69.75 REMARK 500 4 PRO A 3 94.31 -69.74 REMARK 500 4 GLU A 10 45.09 -156.19 REMARK 500 4 ASN A 27 35.77 -167.76 REMARK 500 4 VAL A 30 88.74 -66.87 REMARK 500 4 ILE A 41 71.86 57.50 REMARK 500 4 PRO A 42 64.36 -69.78 REMARK 500 4 GLN A 43 49.39 -170.35 REMARK 500 4 ALA A 45 38.77 -149.10 REMARK 500 4 ALA A 46 53.17 -140.05 REMARK 500 4 GLU A 47 -67.66 -179.68 REMARK 500 4 ALA A 60 125.75 -178.79 REMARK 500 4 ALA A 69 176.94 -58.03 REMARK 500 4 LYS A 91 102.95 -51.10 REMARK 500 4 GLN A 93 -168.07 -168.23 REMARK 500 4 PRO A 95 77.98 -69.80 REMARK 500 REMARK 500 THIS ENTRY HAS 503 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34688 RELATED DB: BMRB REMARK 900 TWO-STATE LIQUID NMR STRUCTURE OF A PDZ2 DOMAIN FROM HPTP1E, APO REMARK 900 FORM DBREF 7QCX A 1 96 UNP Q12923 PTN13_HUMAN 1361 1456 SEQRES 1 A 96 PRO LYS PRO GLY ASP ILE PHE GLU VAL GLU LEU ALA LYS SEQRES 2 A 96 ASN ASP ASN SER LEU GLY ILE SER VAL THR GLY GLY VAL SEQRES 3 A 96 ASN THR SER VAL ARG HIS GLY GLY ILE TYR VAL LYS ALA SEQRES 4 A 96 VAL ILE PRO GLN GLY ALA ALA GLU SER ASP GLY ARG ILE SEQRES 5 A 96 HIS LYS GLY ASP ARG VAL LEU ALA VAL ASN GLY VAL SER SEQRES 6 A 96 LEU GLU GLY ALA THR HIS LYS GLN ALA VAL GLU THR LEU SEQRES 7 A 96 ARG ASN THR GLY GLN VAL VAL HIS LEU LEU LEU GLU LYS SEQRES 8 A 96 GLY GLN SER PRO THR HELIX 1 AA1 LYS A 72 ASN A 80 1 9 SHEET 1 AA1 4 GLU A 8 ALA A 12 0 SHEET 2 AA1 4 VAL A 84 GLU A 90 -1 O LEU A 87 N VAL A 9 SHEET 3 AA1 4 ARG A 57 VAL A 61 -1 N LEU A 59 O LEU A 88 SHEET 4 AA1 4 VAL A 64 SER A 65 -1 O VAL A 64 N VAL A 61 SHEET 1 AA2 2 ILE A 20 THR A 23 0 SHEET 2 AA2 2 TYR A 36 VAL A 40 -1 O TYR A 36 N THR A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1