HEADER OXIDOREDUCTASE 05-DEC-21 7QFD TITLE CRYSTAL STRUCTURE OF A BACTERIAL PYRANOSE 2-OXIDASE COMPLEX WITH D- TITLE 2 GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMC OXIDOREDUCTASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDARTHROBACTER SICCITOLERANS; SOURCE 3 ORGANISM_TAXID: 861266; SOURCE 4 GENE: ARTSIC4J27_4061; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P2OX, FAD, BACTERIA, GLUCOSE, FLAVOPROTEINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.BORGES,T.FRAZAO,A.TABORDA,C.FRAZAO,L.O.MARTINS REVDAT 3 01-MAY-24 7QFD 1 REMARK REVDAT 2 29-NOV-23 7QFD 1 JRNL REVDAT 1 05-JUL-23 7QFD 0 JRNL AUTH A.TABORDA,T.FRAZAO,M.V.RODRIGUES,X.FERNANDEZ-LUENGO, JRNL AUTH 2 F.SANCHO,M.F.LUCAS,C.FRAZAO,E.P.MELO,M.R.VENTURA,L.MASGRAU, JRNL AUTH 3 P.T.BORGES,L.O.MARTINS JRNL TITL MECHANISTIC INSIGHTS INTO GLYCOSIDE 3-OXIDASES INVOLVED IN JRNL TITL 2 C-GLYCOSIDE METABOLISM IN SOIL MICROORGANISMS. JRNL REF NAT COMMUN V. 14 7289 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37963862 JRNL DOI 10.1038/S41467-023-42000-3 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 18815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.360 REMARK 3 FREE R VALUE TEST SET COUNT : 256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.4200 - 2.9700 1.00 9747 140 0.2168 0.2282 REMARK 3 2 2.4600 - 2.3500 0.93 8812 116 0.3610 0.4233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:29) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4568 34.7542 -23.7556 REMARK 3 T TENSOR REMARK 3 T11: 0.5479 T22: 0.4229 REMARK 3 T33: 0.5662 T12: 0.0691 REMARK 3 T13: 0.0865 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 6.0825 L22: 6.0980 REMARK 3 L33: 6.5811 L12: 0.3617 REMARK 3 L13: 1.4451 L23: -3.0201 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: 0.1141 S13: -0.2024 REMARK 3 S21: -0.2081 S22: 0.3836 S23: 0.7359 REMARK 3 S31: -0.7093 S32: -0.1692 S33: -0.4085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 30:48) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3362 32.5562 -27.8824 REMARK 3 T TENSOR REMARK 3 T11: 0.5556 T22: 0.4702 REMARK 3 T33: 0.6417 T12: -0.0090 REMARK 3 T13: -0.0065 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 6.6654 L22: 5.2113 REMARK 3 L33: 2.1622 L12: -0.3889 REMARK 3 L13: -1.4868 L23: 0.3149 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: -0.1554 S13: -0.0986 REMARK 3 S21: -0.6497 S22: 0.3330 S23: 0.5883 REMARK 3 S31: -0.2439 S32: -0.3242 S33: -0.1198 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 49:91) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5337 17.8385 -35.3398 REMARK 3 T TENSOR REMARK 3 T11: 0.6801 T22: 0.5477 REMARK 3 T33: 0.5903 T12: 0.1027 REMARK 3 T13: 0.1151 T23: 0.1255 REMARK 3 L TENSOR REMARK 3 L11: 7.8430 L22: 5.1990 REMARK 3 L33: 9.6483 L12: 0.4238 REMARK 3 L13: -0.8537 L23: 2.9817 REMARK 3 S TENSOR REMARK 3 S11: 0.6844 S12: 0.4495 S13: 0.4901 REMARK 3 S21: -0.4820 S22: -0.5248 S23: -0.5239 REMARK 3 S31: 0.5982 S32: 0.6265 S33: -0.1931 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 92:147) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2503 18.8921 -17.0933 REMARK 3 T TENSOR REMARK 3 T11: 0.5308 T22: 0.4203 REMARK 3 T33: 0.9344 T12: 0.0029 REMARK 3 T13: -0.0242 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.1315 L22: 3.1759 REMARK 3 L33: 5.1315 L12: -0.2259 REMARK 3 L13: 1.9302 L23: -1.8344 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: 0.2475 S13: -0.1196 REMARK 3 S21: 0.3215 S22: -0.1358 S23: -0.5611 REMARK 3 S31: -0.2944 S32: 0.5476 S33: 0.1909 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 148:156) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3185 19.1387 -13.7745 REMARK 3 T TENSOR REMARK 3 T11: 0.6115 T22: 0.6032 REMARK 3 T33: 1.1059 T12: 0.0822 REMARK 3 T13: 0.2689 T23: 0.2905 REMARK 3 L TENSOR REMARK 3 L11: 8.5431 L22: 3.9779 REMARK 3 L33: 6.9719 L12: 1.7035 REMARK 3 L13: 0.1901 L23: -2.4122 REMARK 3 S TENSOR REMARK 3 S11: -0.3658 S12: 0.6502 S13: -0.6006 REMARK 3 S21: 0.7712 S22: 0.6963 S23: 2.0386 REMARK 3 S31: -0.1517 S32: -0.6907 S33: -0.2803 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 157:186) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5768 -1.1454 -17.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.6594 T22: 0.5210 REMARK 3 T33: 0.9354 T12: -0.0748 REMARK 3 T13: -0.0485 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 6.2724 L22: 8.1461 REMARK 3 L33: 4.9962 L12: -2.8378 REMARK 3 L13: 1.7400 L23: -3.8768 REMARK 3 S TENSOR REMARK 3 S11: 0.1648 S12: 0.4621 S13: -0.5668 REMARK 3 S21: -1.4785 S22: 0.4283 S23: -0.1726 REMARK 3 S31: 1.2903 S32: -0.4436 S33: -0.5949 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 187:213) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4613 8.5133 -19.7553 REMARK 3 T TENSOR REMARK 3 T11: 0.6479 T22: 0.5308 REMARK 3 T33: 0.7731 T12: 0.0366 REMARK 3 T13: -0.0064 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.1711 L22: 4.5157 REMARK 3 L33: 4.7409 L12: 1.4816 REMARK 3 L13: -2.4560 L23: -4.0573 REMARK 3 S TENSOR REMARK 3 S11: -0.1833 S12: 0.1513 S13: 0.1665 REMARK 3 S21: -1.0576 S22: 0.4617 S23: 0.1206 REMARK 3 S31: 0.1363 S32: -0.6641 S33: -0.1189 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 214:235) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7414 32.8366 -29.6994 REMARK 3 T TENSOR REMARK 3 T11: 0.5973 T22: 0.5327 REMARK 3 T33: 0.6096 T12: 0.0282 REMARK 3 T13: 0.0098 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 7.5009 L22: 7.1698 REMARK 3 L33: 0.0710 L12: 3.0321 REMARK 3 L13: -0.9335 L23: 0.4726 REMARK 3 S TENSOR REMARK 3 S11: -0.4116 S12: 0.4988 S13: -0.4104 REMARK 3 S21: -0.5685 S22: 0.4140 S23: 0.1958 REMARK 3 S31: -0.5856 S32: -0.2726 S33: -0.0530 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 236:248) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8779 45.9094 -16.1507 REMARK 3 T TENSOR REMARK 3 T11: 1.4834 T22: 0.4410 REMARK 3 T33: 0.8004 T12: 0.0213 REMARK 3 T13: 0.1697 T23: 0.0814 REMARK 3 L TENSOR REMARK 3 L11: 7.4224 L22: 4.3717 REMARK 3 L33: 5.7832 L12: 4.0650 REMARK 3 L13: 6.2090 L23: 4.4386 REMARK 3 S TENSOR REMARK 3 S11: -1.0078 S12: -0.0617 S13: 1.0654 REMARK 3 S21: 1.7393 S22: 0.5742 S23: 1.2984 REMARK 3 S31: -2.6579 S32: 0.6356 S33: -0.2060 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 249:303) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4206 30.2019 -17.9595 REMARK 3 T TENSOR REMARK 3 T11: 0.6520 T22: 0.4703 REMARK 3 T33: 0.6363 T12: -0.0694 REMARK 3 T13: 0.0116 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.9168 L22: 8.1922 REMARK 3 L33: 1.4240 L12: -0.8530 REMARK 3 L13: -0.3765 L23: -2.9910 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: 0.0153 S13: -0.0541 REMARK 3 S21: 0.6602 S22: -0.0531 S23: -0.4665 REMARK 3 S31: -0.5017 S32: 0.0838 S33: 0.1751 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 304:327) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7543 -5.7305 -25.6986 REMARK 3 T TENSOR REMARK 3 T11: 1.1833 T22: 1.1417 REMARK 3 T33: 1.6597 T12: -0.3305 REMARK 3 T13: 0.0739 T23: -0.1535 REMARK 3 L TENSOR REMARK 3 L11: 7.9809 L22: 5.1068 REMARK 3 L33: 3.4469 L12: -4.3083 REMARK 3 L13: 3.0035 L23: 1.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.4377 S12: 2.3863 S13: -3.3119 REMARK 3 S21: -0.6554 S22: 0.4639 S23: 2.5342 REMARK 3 S31: -0.4534 S32: 0.4982 S33: -0.5426 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 328:374) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5245 5.2852 -11.8890 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.3410 REMARK 3 T33: 0.7833 T12: 0.0319 REMARK 3 T13: 0.0169 T23: 0.0873 REMARK 3 L TENSOR REMARK 3 L11: 5.9820 L22: 9.0243 REMARK 3 L33: 8.8713 L12: 2.7681 REMARK 3 L13: -0.0254 L23: 0.4932 REMARK 3 S TENSOR REMARK 3 S11: -0.4698 S12: 0.2768 S13: -0.5345 REMARK 3 S21: 0.0820 S22: 0.3380 S23: -0.3872 REMARK 3 S31: 0.3864 S32: -0.0662 S33: 0.1492 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 375:394) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8703 32.0095 -15.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.6703 T22: 0.7421 REMARK 3 T33: 1.4137 T12: -0.1721 REMARK 3 T13: -0.0997 T23: 0.1195 REMARK 3 L TENSOR REMARK 3 L11: 5.4819 L22: 8.0215 REMARK 3 L33: 9.4307 L12: 2.0514 REMARK 3 L13: 0.9960 L23: -2.8560 REMARK 3 S TENSOR REMARK 3 S11: 0.3757 S12: -0.4895 S13: 1.0347 REMARK 3 S21: 0.3092 S22: -1.0122 S23: -1.6480 REMARK 3 S31: -0.6605 S32: 1.3524 S33: 0.2031 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 395:409) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9233 13.9096 -5.0688 REMARK 3 T TENSOR REMARK 3 T11: 0.6614 T22: 0.6280 REMARK 3 T33: 1.1729 T12: -0.1010 REMARK 3 T13: -0.3094 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 3.1276 L22: 8.4200 REMARK 3 L33: 5.4212 L12: 4.1718 REMARK 3 L13: -3.6226 L23: -3.4137 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: -0.6289 S13: 0.3310 REMARK 3 S21: 1.5099 S22: 0.4598 S23: -0.8576 REMARK 3 S31: -0.8914 S32: 0.1406 S33: 0.0026 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 410:428) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1344 -5.6280 -13.0417 REMARK 3 T TENSOR REMARK 3 T11: 0.5910 T22: 0.5003 REMARK 3 T33: 1.1054 T12: 0.0810 REMARK 3 T13: 0.0646 T23: 0.1874 REMARK 3 L TENSOR REMARK 3 L11: 6.0054 L22: 3.3919 REMARK 3 L33: 8.7844 L12: 4.5751 REMARK 3 L13: 2.1232 L23: 1.4527 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 0.3416 S13: -1.2245 REMARK 3 S21: -0.0861 S22: -0.3013 S23: -1.0632 REMARK 3 S31: 1.5551 S32: 0.3249 S33: 0.0375 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 429:449) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2234 15.8777 -12.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.6630 T22: 0.4762 REMARK 3 T33: 0.7611 T12: -0.0419 REMARK 3 T13: 0.0883 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 2.9072 L22: 0.4284 REMARK 3 L33: 3.1421 L12: 0.9259 REMARK 3 L13: -0.6134 L23: -0.4056 REMARK 3 S TENSOR REMARK 3 S11: -0.3785 S12: 0.6318 S13: -0.1375 REMARK 3 S21: 1.4970 S22: -0.2725 S23: -0.2530 REMARK 3 S31: -0.3248 S32: 0.3131 S33: 0.1190 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 450:494) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2728 27.8342 -8.4786 REMARK 3 T TENSOR REMARK 3 T11: 0.7996 T22: 0.5135 REMARK 3 T33: 0.6757 T12: -0.0680 REMARK 3 T13: 0.0474 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.4397 L22: 8.3085 REMARK 3 L33: 4.4324 L12: -1.9629 REMARK 3 L13: -0.2408 L23: -1.5218 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: -0.2523 S13: -0.0606 REMARK 3 S21: 0.8873 S22: 0.1907 S23: -0.7348 REMARK 3 S31: -1.2231 S32: 0.0024 S33: -0.1320 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 495:509) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3890 37.9555 -12.6279 REMARK 3 T TENSOR REMARK 3 T11: 0.5560 T22: 0.4721 REMARK 3 T33: 0.8227 T12: 0.0863 REMARK 3 T13: 0.2014 T23: 0.0756 REMARK 3 L TENSOR REMARK 3 L11: 7.5386 L22: 2.4985 REMARK 3 L33: 3.3122 L12: -1.7671 REMARK 3 L13: -1.1333 L23: -0.6155 REMARK 3 S TENSOR REMARK 3 S11: -0.3985 S12: 0.1294 S13: -0.2715 REMARK 3 S21: 2.2810 S22: 0.6238 S23: 1.7303 REMARK 3 S31: -0.4777 S32: 0.1471 S33: -0.1685 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9654 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 75.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: ASP2OX WT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE AND 0.1 M TRIS REMARK 280 -HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.09650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.09650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.12800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.24450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.12800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.24450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.09650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.12800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.24450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.09650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.12800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.24450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1327 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 HIS A 4 REMARK 465 ALA A 77 REMARK 465 ALA A 78 REMARK 465 THR A 79 REMARK 465 VAL A 80 REMARK 465 ASN A 81 REMARK 465 SER A 82 REMARK 465 PRO A 83 REMARK 465 GLY A 84 REMARK 465 ALA A 85 REMARK 465 VAL A 86 REMARK 465 LYS A 87 REMARK 465 SER A 88 REMARK 465 GLY A 89 REMARK 465 ARG A 201 REMARK 465 ARG A 202 REMARK 465 GLN A 203 REMARK 465 ASP A 204 REMARK 465 GLY A 205 REMARK 465 ALA A 206 REMARK 465 GLN A 308 REMARK 465 PRO A 309 REMARK 465 GLU A 310 REMARK 465 ASP A 311 REMARK 465 ALA A 312 REMARK 465 PRO A 313 REMARK 465 ALA A 314 REMARK 465 ALA A 315 REMARK 465 ALA A 316 REMARK 465 ASN A 317 REMARK 465 GLY A 318 REMARK 465 ALA A 319 REMARK 465 LEU A 320 REMARK 465 ASP A 345 REMARK 465 ALA A 346 REMARK 465 SER A 347 REMARK 465 PRO A 348 REMARK 465 VAL A 349 REMARK 465 PRO A 350 REMARK 465 LEU A 351 REMARK 465 ALA A 352 REMARK 465 ASP A 353 REMARK 465 ASP A 354 REMARK 465 ASP A 355 REMARK 465 PRO A 356 REMARK 465 ILE A 357 REMARK 465 VAL A 358 REMARK 465 PRO A 359 REMARK 465 MET A 510 REMARK 465 SER A 511 REMARK 465 GLU A 512 REMARK 465 SER A 513 REMARK 465 ASP A 514 REMARK 465 ASN A 515 REMARK 465 ARG A 516 REMARK 465 LEU A 517 REMARK 465 SER A 518 REMARK 465 LYS A 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 335 O HOH A 1301 2.08 REMARK 500 N SER A 438 O HOH A 1302 2.13 REMARK 500 O SER A 321 NE2 GLN A 343 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 63 OD2 ASP A 256 7544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 66.95 -118.89 REMARK 500 ALA A 75 52.54 -97.43 REMARK 500 ALA A 130 -8.33 75.89 REMARK 500 PHE A 143 39.57 -75.83 REMARK 500 HIS A 163 42.05 -109.30 REMARK 500 ARG A 236 144.44 -176.14 REMARK 500 ASP A 270 159.66 81.92 REMARK 500 ASP A 306 -154.72 -174.64 REMARK 500 GLN A 323 -34.09 -155.67 REMARK 500 SER A 324 -16.40 -144.59 REMARK 500 PRO A 336 39.54 -77.36 REMARK 500 LEU A 426 -88.06 -75.47 REMARK 500 ASP A 452 24.08 -147.91 REMARK 500 TRP A 464 -71.62 -60.56 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7QFD A 1 519 UNP A0A024H8G7_9MICC DBREF2 7QFD A A0A024H8G7 1 519 SEQRES 1 A 519 MET SER GLY HIS ARG TYR PRO ALA ALA VAL ASP VAL ALA SEQRES 2 A 519 ILE VAL GLY SER GLY PRO THR ALA SER ALA TYR ALA ARG SEQRES 3 A 519 ILE LEU SER GLU GLU ALA PRO GLY ALA THR ILE ALA MET SEQRES 4 A 519 PHE GLU VAL GLY PRO THR VAL SER ASN PRO PRO GLY ALA SEQRES 5 A 519 HIS VAL LYS ASN ILE GLU ASP PRO ASP SER ARG SER LEU SEQRES 6 A 519 ALA GLN ARG ALA SER GLU GLY PRO GLY ALA GLY ALA ALA SEQRES 7 A 519 THR VAL ASN SER PRO GLY ALA VAL LYS SER GLY GLU ARG SEQRES 8 A 519 ARG ALA ARG PRO GLY THR TYR LEU LEU GLN ASP GLY TYR SEQRES 9 A 519 ALA PHE PRO GLY GLU ASP GLY MET PRO VAL ALA ALA MET SEQRES 10 A 519 SER SER ASN VAL GLY GLY MET ALA ALA HIS TRP THR ALA SEQRES 11 A 519 ALA CYS PRO ARG PRO GLY GLY LYS GLU ARG ILE PRO PHE SEQRES 12 A 519 LEU PRO ASP LEU GLU GLU LEU LEU ASN ASP ALA ASP ARG SEQRES 13 A 519 LEU LEU GLY VAL THR THR HIS ALA PHE ASP GLY ALA PRO SEQRES 14 A 519 PHE SER ASP LEU VAL ARG GLU ARG LEU ALA ALA VAL VAL SEQRES 15 A 519 ASP GLN GLY ARG THR PRO ALA PHE ARG VAL GLN PRO MET SEQRES 16 A 519 PRO LEU ALA VAL HIS ARG ARG GLN ASP GLY ALA LEU VAL SEQRES 17 A 519 TRP SER GLY SER ASP VAL VAL MET GLY GLU ALA THR ARG SEQRES 18 A 519 ASP ASN PRO GLN PHE GLU LEU PHE ASP GLU SER LEU VAL SEQRES 19 A 519 THR ARG VAL LEU VAL GLU ASP GLY THR ALA ALA GLY VAL SEQRES 20 A 519 GLU VAL GLN ASP ARG ARG SER GLY ASP THR TYR GLN VAL SEQRES 21 A 519 ALA ALA ARG TYR VAL VAL VAL GLY ALA ASP ALA LEU ARG SEQRES 22 A 519 THR PRO GLN LEU LEU TRP ALA SER GLY ILE ARG PRO ASP SEQRES 23 A 519 ALA LEU GLY ARG TYR LEU ASN ASP GLN ALA GLN VAL VAL SEQRES 24 A 519 PHE ALA SER ARG LEU ARG ASP VAL GLN PRO GLU ASP ALA SEQRES 25 A 519 PRO ALA ALA ALA ASN GLY ALA LEU SER GLU GLN SER GLY SEQRES 26 A 519 VAL ALA TRP VAL PRO TYR THR ASP GLU ALA PRO PHE HIS SEQRES 27 A 519 GLY GLN ILE MET GLN LEU ASP ALA SER PRO VAL PRO LEU SEQRES 28 A 519 ALA ASP ASP ASP PRO ILE VAL PRO GLY SER ILE VAL GLY SEQRES 29 A 519 LEU GLY LEU PHE CYS ALA LYS ASP LEU GLN ARG GLU ASP SEQRES 30 A 519 ARG VAL ALA PHE ASP ASP ASP THR ARG ASP SER TYR GLY SEQRES 31 A 519 LEU PRO ALA MET ARG ILE HIS TYR ARG LEU THR GLU ARG SEQRES 32 A 519 ASP HIS VAL VAL LEU ASP ARG ALA ARG GLN GLU ILE VAL SEQRES 33 A 519 ARG LEU GLY LYS ALA VAL GLY GLU PRO LEU ASP GLU ARG SEQRES 34 A 519 PRO PHE VAL LEU PRO PRO GLY ALA SER LEU HIS TYR GLN SEQRES 35 A 519 GLY THR THR ARG MET GLY GLU THR ASP ASP GLY GLU SER SEQRES 36 A 519 VAL CYS SER PRO ASP SER GLN VAL TRP GLN VAL PRO GLY SEQRES 37 A 519 LEU PHE VAL ALA GLY ASN GLY VAL ILE PRO THR ALA THR SEQRES 38 A 519 ALA CYS ASN PRO THR LEU THR SER VAL ALA LEU ALA VAL SEQRES 39 A 519 ARG GLY ALA ARG LYS ILE ALA GLU GLU ILE THR SER SER SEQRES 40 A 519 LEU LEU MET SER GLU SER ASP ASN ARG LEU SER LYS HET FAD A1201 53 HET GLC A1202 12 HET SO4 A1203 5 HET TRS A1204 8 HET SO4 A1205 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN TRS TRIS BUFFER FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 GLC C6 H12 O6 FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 7 HOH *29(H2 O) HELIX 1 AA1 GLY A 18 ALA A 32 1 15 HELIX 2 AA2 HIS A 53 ILE A 57 5 5 HELIX 3 AA3 ASP A 59 ALA A 69 1 11 HELIX 4 AA4 GLY A 122 HIS A 127 5 6 HELIX 5 AA5 GLY A 136 ARG A 140 5 5 HELIX 6 AA6 ASP A 146 GLY A 159 1 14 HELIX 7 AA7 ALA A 168 ASP A 183 1 16 HELIX 8 AA8 THR A 187 ARG A 191 5 5 HELIX 9 AA9 GLY A 211 ASP A 222 1 12 HELIX 10 AB1 ALA A 269 SER A 281 1 13 HELIX 11 AB2 THR A 401 GLY A 423 1 23 HELIX 12 AB3 GLY A 473 ILE A 477 5 5 HELIX 13 AB4 PRO A 485 SER A 507 1 23 SHEET 1 AA1 6 PHE A 226 PHE A 229 0 SHEET 2 AA1 6 ILE A 37 PHE A 40 1 N MET A 39 O PHE A 229 SHEET 3 AA1 6 ALA A 9 VAL A 15 1 N ILE A 14 O PHE A 40 SHEET 4 AA1 6 THR A 257 VAL A 267 1 O VAL A 266 N VAL A 15 SHEET 5 AA1 6 ALA A 244 ASP A 251 -1 N VAL A 249 O TYR A 258 SHEET 6 AA1 6 SER A 232 VAL A 239 -1 N LEU A 233 O GLN A 250 SHEET 1 AA2 5 PHE A 226 PHE A 229 0 SHEET 2 AA2 5 ILE A 37 PHE A 40 1 N MET A 39 O PHE A 229 SHEET 3 AA2 5 ALA A 9 VAL A 15 1 N ILE A 14 O PHE A 40 SHEET 4 AA2 5 THR A 257 VAL A 267 1 O VAL A 266 N VAL A 15 SHEET 5 AA2 5 LEU A 469 VAL A 471 1 O PHE A 470 N VAL A 267 SHEET 1 AA3 6 GLN A 193 PRO A 194 0 SHEET 2 AA3 6 VAL A 326 VAL A 329 -1 O TRP A 328 N GLN A 193 SHEET 3 AA3 6 PHE A 337 MET A 342 -1 O ILE A 341 N ALA A 327 SHEET 4 AA3 6 ILE A 362 CYS A 369 -1 O GLY A 366 N GLN A 340 SHEET 5 AA3 6 ALA A 296 ARG A 303 -1 N PHE A 300 O LEU A 365 SHEET 6 AA3 6 GLU A 424 PRO A 425 -1 O GLU A 424 N ARG A 303 SHEET 1 AA4 6 GLN A 193 PRO A 194 0 SHEET 2 AA4 6 VAL A 326 VAL A 329 -1 O TRP A 328 N GLN A 193 SHEET 3 AA4 6 PHE A 337 MET A 342 -1 O ILE A 341 N ALA A 327 SHEET 4 AA4 6 ILE A 362 CYS A 369 -1 O GLY A 366 N GLN A 340 SHEET 5 AA4 6 ALA A 296 ARG A 303 -1 N PHE A 300 O LEU A 365 SHEET 6 AA4 6 PHE A 431 VAL A 432 -1 O PHE A 431 N VAL A 299 SHEET 1 AA5 2 ASN A 293 ASP A 294 0 SHEET 2 AA5 2 TYR A 441 GLN A 442 -1 O GLN A 442 N ASN A 293 SHEET 1 AA6 2 ARG A 378 ARG A 386 0 SHEET 2 AA6 2 PRO A 392 HIS A 397 -1 O ALA A 393 N THR A 385 CISPEP 1 ASN A 48 PRO A 49 0 -1.21 CRYST1 78.256 78.489 150.193 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006658 0.00000