HEADER TRANSFERASE 06-DEC-21 7QFM
TITLE PIM1 IN COMPLEX WITH (E)-4-((2-OXOINDOLIN-3-YLIDENE)METHYL)BENZOIC
TITLE 2 ACID AND PIMTIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1;
COMPND 3 CHAIN: A;
COMPND 4 EC: 2.7.11.1;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: PIMTIDE;
COMPND 9 CHAIN: D;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PIM1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 12 ORGANISM_TAXID: 32630
KEYWDS SERINE KINASE, KINASE, COMPLEX, PIM1, PIM, PIM-1, INHIBITOR,
KEYWDS 2 TUMORIGENISIS, CANCER, PIMTIDE, PROTO ONCOGEN, ATP, PHOSPHORYLATION,
KEYWDS 3 APOPTOSIS, CELL CYCLE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.M.M.HOCHBAN,A.HEINE,W.E.DIEDERICH
REVDAT 4 23-OCT-24 7QFM 1 REMARK
REVDAT 3 07-FEB-24 7QFM 1 REMARK
REVDAT 2 01-FEB-23 7QFM 1 SOURCE JRNL
REVDAT 1 21-DEC-22 7QFM 0
JRNL AUTH L.HEYDER,P.M.M.HOCHBAN,C.TAYLOR,F.CHEVILLARD,C.SIEFKER,
JRNL AUTH 2 C.IKING,H.BORCHARDT,A.AIGNER,G.KLEBE,A.HEINE,P.KOLB,
JRNL AUTH 3 W.E.DIEDERICH
JRNL TITL POSE, DUPLICATE, THEN ELABORATE: STEPS TOWARDS INCREASED
JRNL TITL 2 AFFINITY FOR INHIBITORS TARGETING THE SPECIFICITY SURFACE OF
JRNL TITL 3 THE PIM-1 KINASE.
JRNL REF EUR.J.MED.CHEM. V. 245 14914 2023
JRNL REFN ISSN 0223-5234
JRNL PMID 36410167
JRNL DOI 10.1016/J.EJMECH.2022.114914
REMARK 2
REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.16_3549
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.92
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 3 NUMBER OF REFLECTIONS : 31152
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.159
REMARK 3 R VALUE (WORKING SET) : 0.158
REMARK 3 FREE R VALUE : 0.178
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
REMARK 3 FREE R VALUE TEST SET COUNT : 1556
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 41.9200 - 4.3300 0.99 2746 145 0.1595 0.1768
REMARK 3 2 4.3300 - 3.4400 1.00 2711 143 0.1507 0.1672
REMARK 3 3 3.4400 - 3.0000 1.00 2698 142 0.1621 0.1862
REMARK 3 4 3.0000 - 2.7300 1.00 2704 142 0.1675 0.1810
REMARK 3 5 2.7300 - 2.5300 1.00 2687 142 0.1707 0.1884
REMARK 3 6 2.5300 - 2.3800 1.00 2701 141 0.1613 0.2012
REMARK 3 7 2.3800 - 2.2600 1.00 2673 141 0.1518 0.1599
REMARK 3 8 2.2600 - 2.1700 1.00 2686 141 0.1580 0.1785
REMARK 3 9 2.1700 - 2.0800 1.00 2681 141 0.1482 0.1797
REMARK 3 10 2.0800 - 2.0100 1.00 2671 140 0.1461 0.1743
REMARK 3 11 2.0100 - 1.9500 0.98 2638 138 0.1605 0.1870
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.145
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.219
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 34.91
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.25
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 2316
REMARK 3 ANGLE : 0.785 3147
REMARK 3 CHIRALITY : 0.054 339
REMARK 3 PLANARITY : 0.005 428
REMARK 3 DIHEDRAL : 21.239 1373
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 96 )
REMARK 3 ORIGIN FOR THE GROUP (A):-111.9079 201.1022 -8.5785
REMARK 3 T TENSOR
REMARK 3 T11: 0.3803 T22: 0.4684
REMARK 3 T33: 0.4779 T12: -0.1072
REMARK 3 T13: 0.0185 T23: -0.0298
REMARK 3 L TENSOR
REMARK 3 L11: 0.8652 L22: 0.2414
REMARK 3 L33: 0.4928 L12: 0.0422
REMARK 3 L13: 0.2109 L23: -0.0985
REMARK 3 S TENSOR
REMARK 3 S11: -0.1506 S12: 0.5472 S13: -0.0500
REMARK 3 S21: -0.0386 S22: 0.2227 S23: -0.3067
REMARK 3 S31: -0.1691 S32: 0.4050 S33: 0.0001
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 140 )
REMARK 3 ORIGIN FOR THE GROUP (A):-121.0399 203.1734 -3.3136
REMARK 3 T TENSOR
REMARK 3 T11: 0.3544 T22: 0.3146
REMARK 3 T33: 0.3443 T12: -0.0658
REMARK 3 T13: 0.0068 T23: -0.0146
REMARK 3 L TENSOR
REMARK 3 L11: 0.8223 L22: 0.2842
REMARK 3 L33: 0.8565 L12: 0.1978
REMARK 3 L13: 0.6552 L23: -0.1240
REMARK 3 S TENSOR
REMARK 3 S11: 0.1304 S12: -0.0129 S13: 0.3692
REMARK 3 S21: 0.1828 S22: 0.0285 S23: -0.1141
REMARK 3 S31: -0.4029 S32: 0.2725 S33: 0.0070
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 305 )
REMARK 3 ORIGIN FOR THE GROUP (A):-134.1615 191.1465 0.7503
REMARK 3 T TENSOR
REMARK 3 T11: 0.2410 T22: 0.1605
REMARK 3 T33: 0.1990 T12: -0.0341
REMARK 3 T13: -0.0244 T23: -0.0072
REMARK 3 L TENSOR
REMARK 3 L11: 1.6874 L22: 0.7996
REMARK 3 L33: 2.4032 L12: 0.1614
REMARK 3 L13: -0.4536 L23: 0.1891
REMARK 3 S TENSOR
REMARK 3 S11: -0.0130 S12: -0.0438 S13: -0.0207
REMARK 3 S21: 0.0668 S22: 0.0541 S23: -0.0266
REMARK 3 S31: 0.1113 S32: -0.0753 S33: 0.0001
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 9 )
REMARK 3 ORIGIN FOR THE GROUP (A):-123.6515 192.7922 12.8723
REMARK 3 T TENSOR
REMARK 3 T11: 0.4291 T22: 0.5780
REMARK 3 T33: 0.3796 T12: -0.0386
REMARK 3 T13: -0.1022 T23: -0.0335
REMARK 3 L TENSOR
REMARK 3 L11: 0.2503 L22: 1.6184
REMARK 3 L33: 0.7740 L12: -0.2272
REMARK 3 L13: -0.3664 L23: -0.2468
REMARK 3 S TENSOR
REMARK 3 S11: 0.0343 S12: -0.3425 S13: -0.3115
REMARK 3 S21: 0.8549 S22: 0.3015 S23: 0.0088
REMARK 3 S31: 0.5139 S32: 0.3235 S33: 0.0150
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7QFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-21.
REMARK 100 THE DEPOSITION ID IS D_1292117978.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-OCT-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.8 - 7.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : SAGITALLY BENDED SI111-CRYSTAL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02
REMARK 200 DATA SCALING SOFTWARE : XDS 1.02
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31177
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950
REMARK 200 RESOLUTION RANGE LOW (A) : 48.409
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 20.70
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.03800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0
REMARK 200 DATA REDUNDANCY IN SHELL : 21.00
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.44000
REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5NDT
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 59.70
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PROPANE (PH 7.0), 10%
REMARK 280 ETHYLENE GLYCOL, 0.3% DMSO, 20% PEG3350, 200 MM MGOAC, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.43133
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.71567
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.07350
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.35783
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.78917
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 LEU A 2
REMARK 465 LEU A 3
REMARK 465 SER A 4
REMARK 465 LYS A 5
REMARK 465 ILE A 6
REMARK 465 ASN A 7
REMARK 465 SER A 8
REMARK 465 LEU A 9
REMARK 465 ALA A 10
REMARK 465 HIS A 11
REMARK 465 LEU A 12
REMARK 465 ARG A 13
REMARK 465 ALA A 14
REMARK 465 ALA A 15
REMARK 465 PRO A 16
REMARK 465 CYS A 17
REMARK 465 ASN A 18
REMARK 465 ASP A 19
REMARK 465 LEU A 20
REMARK 465 HIS A 21
REMARK 465 ALA A 22
REMARK 465 THR A 23
REMARK 465 LYS A 24
REMARK 465 LEU A 25
REMARK 465 ALA A 26
REMARK 465 PRO A 27
REMARK 465 GLY A 28
REMARK 465 LYS A 29
REMARK 465 GLU A 30
REMARK 465 LYS A 31
REMARK 465 GLU A 32
REMARK 465 GLY A 47
REMARK 465 GLY A 48
REMARK 465 SER A 306
REMARK 465 LEU A 307
REMARK 465 SER A 308
REMARK 465 PRO A 309
REMARK 465 GLY A 310
REMARK 465 PRO A 311
REMARK 465 SER A 312
REMARK 465 ALA D 1
REMARK 465 GLY D 10
REMARK 465 PRO D 11
REMARK 465 PRO D 12
REMARK 465 THR D 13
REMARK 465 ALA D 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PRO A 33 CG CD
REMARK 470 LEU A 34 CG CD1 CD2
REMARK 470 GLU A 35 CG CD OE1 OE2
REMARK 470 GLN A 39 CG CD OE1 NE2
REMARK 470 SER A 46 OG
REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ILE A 56 CG2 CD1
REMARK 470 VAL A 58 CG1
REMARK 470 SER A 59 OG
REMARK 470 ASN A 61 OD1 ND2
REMARK 470 ASP A 72 OD1 OD2
REMARK 470 ARG A 73 NH1
REMARK 470 SER A 75 OG
REMARK 470 GLU A 79 CG CD OE1 OE2
REMARK 470 LEU A 80 CD1 CD2
REMARK 470 PRO A 81 CG CD
REMARK 470 ASN A 82 CG OD1 ND2
REMARK 470 THR A 84 OG1 CG2
REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 94 CE NZ
REMARK 470 SER A 101 OG
REMARK 470 ARG A 105 NE CZ NH1 NH2
REMARK 470 ASP A 114 OD1
REMARK 470 GLU A 124 CD OE1 OE2
REMARK 470 ARG A 179 CZ NH1 NH2
REMARK 470 ARG A 214 NH1
REMARK 470 HIS A 216 CG ND1 CD2 CE1 NE2
REMARK 470 ARG A 217 CD NE CZ NH1 NH2
REMARK 470 GLU A 246 OE2
REMARK 470 ILE A 249 CD1
REMARK 470 GLN A 252 OE1
REMARK 470 GLU A 262 OE2
REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 297 CG CD OE1 NE2
REMARK 470 LYS D 3 CG CD CE NZ
REMARK 470 ARG D 5 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 60 21.46 -152.87
REMARK 500 SER A 97 29.12 -77.40
REMARK 500 ASP A 167 42.82 -147.14
REMARK 500 ASP A 186 79.43 57.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 615
REMARK 615 ZERO OCCUPANCY ATOM
REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 615 M RES C SSEQI
REMARK 615 GOL A 401
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 7QB2 RELATED DB: PDB
REMARK 900 7QB2 CONTAINS THE SAME PROTEIN COMPLEXED WITH ANOTHER INHIBITOR
DBREF 7QFM A 1 312 UNP P11309 PIM1_HUMAN 1 312
DBREF 7QFM D 1 14 PDB 7QFM 7QFM 1 14
SEQADV 7QFM GLY A 250 UNP P11309 ARG 250 ENGINEERED MUTATION
SEQRES 1 A 312 MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS LEU ARG
SEQRES 2 A 312 ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS LEU ALA
SEQRES 3 A 312 PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN
SEQRES 4 A 312 VAL GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL
SEQRES 5 A 312 TYR SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA
SEQRES 6 A 312 ILE LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY
SEQRES 7 A 312 GLU LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL
SEQRES 8 A 312 LEU LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE
SEQRES 9 A 312 ARG LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL
SEQRES 10 A 312 LEU ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE
SEQRES 11 A 312 ASP PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU
SEQRES 12 A 312 ALA ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG
SEQRES 13 A 312 HIS CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS
SEQRES 14 A 312 ASP GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU
SEQRES 15 A 312 LYS LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP
SEQRES 16 A 312 THR VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER
SEQRES 17 A 312 PRO PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG
SEQRES 18 A 312 SER ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP
SEQRES 19 A 312 MET VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU
SEQRES 20 A 312 ILE ILE GLY GLY GLN VAL PHE PHE ARG GLN ARG VAL SER
SEQRES 21 A 312 SEP GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU
SEQRES 22 A 312 ARG PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN
SEQRES 23 A 312 HIS PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR
SEQRES 24 A 312 ALA GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER
SEQRES 1 D 14 ALA ARG LYS ARG ARG ARG HIS PRO SER GLY PRO PRO THR
SEQRES 2 D 14 ALA
MODRES 7QFM SEP A 261 SER MODIFIED RESIDUE
HET SEP A 261 10
HET GOL A 401 6
HET AY3 A 402 20
HETNAM SEP PHOSPHOSERINE
HETNAM GOL GLYCEROL
HETNAM AY3 4-[(~{E})-(2-OXIDANYLIDENE-1~{H}-INDOL-3-YLIDENE)
HETNAM 2 AY3 METHYL]BENZOIC ACID
HETSYN SEP PHOSPHONOSERINE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 SEP C3 H8 N O6 P
FORMUL 3 GOL C3 H8 O3
FORMUL 4 AY3 C16 H11 N O3
FORMUL 5 HOH *123(H2 O)
HELIX 1 AA1 PRO A 33 GLN A 37 1 5
HELIX 2 AA2 ASP A 72 ILE A 74 5 3
HELIX 3 AA3 MET A 88 SER A 97 1 10
HELIX 4 AA4 LEU A 129 GLY A 137 1 9
HELIX 5 AA5 GLN A 140 CYS A 161 1 22
HELIX 6 AA6 LYS A 169 GLU A 171 5 3
HELIX 7 AA7 THR A 204 SER A 208 5 5
HELIX 8 AA8 PRO A 209 HIS A 216 1 8
HELIX 9 AA9 HIS A 219 GLY A 238 1 20
HELIX 10 AB1 HIS A 244 GLY A 251 1 8
HELIX 11 AB2 SER A 260 LEU A 271 1 12
HELIX 12 AB3 ARG A 274 ARG A 278 5 5
HELIX 13 AB4 THR A 280 ASN A 286 1 7
HELIX 14 AB5 HIS A 287 GLN A 291 5 5
HELIX 15 AB6 LEU A 295 LEU A 304 1 10
SHEET 1 AA1 5 TYR A 38 LEU A 44 0
SHEET 2 AA1 5 VAL A 52 ARG A 57 -1 O SER A 54 N GLY A 41
SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53
SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67
SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119
SHEET 1 AA2 2 TRP A 77 GLU A 79 0
SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78
SHEET 1 AA3 3 VAL A 126 ASP A 128 0
SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127
SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176
SHEET 1 AA4 2 VAL A 163 LEU A 164 0
SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164
LINK C SER A 260 N SEP A 261 1555 1555 1.33
LINK C SEP A 261 N GLU A 262 1555 1555 1.33
CISPEP 1 GLU A 124 PRO A 125 0 -0.13
CRYST1 96.818 96.818 80.147 90.00 90.00 120.00 P 65 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010329 0.005963 0.000000 0.00000
SCALE2 0.000000 0.011927 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012477 0.00000