HEADER HYDROLASE 08-DEC-21 7QGL TITLE HUMAN CD73 (ECTO 5'-NUCLEOTIDASE) IN COMPLEX WITH MRS4602 (A 3-METHYL- TITLE 2 CMPCP DERIVATIVE, COMPOUND 21 IN PAPER) IN THE OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5'-NT,ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS EN, E5NT, ECTO-NUCLEOTIDASE, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.STRATER REVDAT 3 31-JAN-24 7QGL 1 AUTHOR REVDAT 2 23-FEB-22 7QGL 1 JRNL REVDAT 1 16-FEB-22 7QGL 0 JRNL AUTH M.SCORTICHINI,R.M.IDRIS,S.MOSCHUTZ,A.KEIM,V.SALMASO, JRNL AUTH 2 C.DOBELMANN,P.OLIVA,K.LOSENKOVA,H.IRJALA,S.VAITTINEN, JRNL AUTH 3 J.SANDHOLM,G.G.YEGUTKIN,N.STRATER,A.JUNKER,C.E.MULLER, JRNL AUTH 4 K.A.JACOBSON JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP OF 3-METHYLCYTIDINE-5'-ALPHA JRNL TITL 2 , BETA-METHYLENEDIPHOSPHATES AS CD73 INHIBITORS. JRNL REF J.MED.CHEM. V. 65 2409 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35080883 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01852 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (20-OCT-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 91936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4595 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1839 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2234 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1736 REMARK 3 BIN R VALUE (WORKING SET) : 0.2228 REMARK 3 BIN FREE R VALUE : 0.2323 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 103 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 652 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50530 REMARK 3 B22 (A**2) : -1.29340 REMARK 3 B33 (A**2) : 0.78810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.160 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.067 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.062 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.061 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4498 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6148 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1621 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 801 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4471 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 570 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5053 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|27 - A|333 A|601 - A|603} REMARK 3 ORIGIN FOR THE GROUP (A): 23.1748 33.6890 13.4513 REMARK 3 T TENSOR REMARK 3 T11: -0.0012 T22: -0.0169 REMARK 3 T33: -0.0152 T12: -0.0012 REMARK 3 T13: -0.0046 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.2902 L22: 0.3888 REMARK 3 L33: 0.2329 L12: 0.0408 REMARK 3 L13: 0.0021 L23: 0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0001 S13: 0.0217 REMARK 3 S21: -0.0252 S22: -0.0157 S23: 0.0014 REMARK 3 S31: 0.0112 S32: 0.0033 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|334 - A|549} REMARK 3 ORIGIN FOR THE GROUP (A): 25.1184 10.4633 35.3059 REMARK 3 T TENSOR REMARK 3 T11: -0.0039 T22: -0.0166 REMARK 3 T33: -0.0114 T12: 0.0114 REMARK 3 T13: 0.0011 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3024 L22: 0.3944 REMARK 3 L33: 0.1784 L12: -0.0423 REMARK 3 L13: 0.1310 L23: -0.0279 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.0228 S13: -0.0064 REMARK 3 S21: -0.0071 S22: 0.0161 S23: 0.0115 REMARK 3 S31: -0.0175 S32: 0.0093 S33: 0.0115 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE FULLY REFINED WITH ZERO REMARK 3 OCCUPANCY AT NUCLEAR POSITION. REFINEMENT NOTES. NUMBER OF REMARK 3 REFINEMENT NOTES : 1 NOTE 1 : IDEAL-DIST CONTACT TERM CONTACT REMARK 3 SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 7QGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 21.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 6TVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MRS4602, 100 MICROM ZNCL2, 8 % REMARK 280 PEG 6.000, 0.1 M MES PH 6.2, 20 % PEG200, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.42800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.92050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.42800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.92050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -190.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.85600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 550 REMARK 465 GLY A 551 REMARK 465 GLY A 552 REMARK 465 GLY A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 GLY A 556 REMARK 465 GLY A 557 REMARK 465 GLY A 558 REMARK 465 GLY A 559 REMARK 465 THR A 560 REMARK 465 ASP A 561 REMARK 465 ASP A 562 REMARK 465 ASP A 563 REMARK 465 ASP A 564 REMARK 465 LYS A 565 REMARK 465 TRP A 566 REMARK 465 SER A 567 REMARK 465 HIS A 568 REMARK 465 PRO A 569 REMARK 465 GLN A 570 REMARK 465 PHE A 571 REMARK 465 GLU A 572 REMARK 465 LYS A 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 88 126.04 75.33 REMARK 500 LYS A 136 38.49 -98.33 REMARK 500 SER A 141 116.24 -170.11 REMARK 500 SER A 185 -169.60 -172.46 REMARK 500 ASN A 186 55.28 -119.34 REMARK 500 HIS A 243 -48.64 79.00 REMARK 500 SER A 255 -150.93 -144.79 REMARK 500 TYR A 281 -121.74 58.48 REMARK 500 ASP A 377 -157.73 -81.51 REMARK 500 ASN A 402 59.81 -96.72 REMARK 500 LYS A 536 -49.67 72.33 REMARK 500 TYR A 539 56.51 -156.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1351 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1352 DISTANCE = 6.81 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 605 REMARK 610 1PE A 606 REMARK 610 1PE A 608 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 HIS A 38 NE2 116.2 REMARK 620 3 ASP A 85 OD2 92.6 92.8 REMARK 620 4 HOH A 721 O 97.5 90.2 166.9 REMARK 620 5 HOH A 759 O 98.1 144.7 76.6 93.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 ASN A 117 OD1 96.7 REMARK 620 3 HIS A 220 NE2 89.5 94.6 REMARK 620 4 HIS A 243 ND1 167.9 92.2 97.9 REMARK 620 5 HOH A 759 O 77.4 135.5 128.9 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 O REMARK 620 2 ASP A 237 OD1 144.8 REMARK 620 3 ASP A 237 OD2 90.8 54.1 REMARK 620 4 GLY A 298 O 94.4 95.8 111.2 REMARK 620 5 1PE A 607 OH3 102.7 109.7 148.9 95.7 REMARK 620 6 HOH A 764 O 76.1 91.6 68.7 170.5 87.3 REMARK 620 N 1 2 3 4 5 DBREF 7QGL A 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 7QGL ASP A 53 UNP P21589 ASN 53 ENGINEERED MUTATION SEQADV 7QGL ASP A 311 UNP P21589 ASN 311 ENGINEERED MUTATION SEQADV 7QGL ASP A 333 UNP P21589 ASN 333 ENGINEERED MUTATION SEQADV 7QGL ASP A 403 UNP P21589 ASN 403 ENGINEERED MUTATION SEQADV 7QGL SER A 478 UNP P21589 LYS 478 CONFLICT SEQADV 7QGL GLY A 550 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 551 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 552 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 553 UNP P21589 EXPRESSION TAG SEQADV 7QGL ALA A 554 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 555 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 556 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 557 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 558 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLY A 559 UNP P21589 EXPRESSION TAG SEQADV 7QGL THR A 560 UNP P21589 EXPRESSION TAG SEQADV 7QGL ASP A 561 UNP P21589 EXPRESSION TAG SEQADV 7QGL ASP A 562 UNP P21589 EXPRESSION TAG SEQADV 7QGL ASP A 563 UNP P21589 EXPRESSION TAG SEQADV 7QGL ASP A 564 UNP P21589 EXPRESSION TAG SEQADV 7QGL LYS A 565 UNP P21589 EXPRESSION TAG SEQADV 7QGL TRP A 566 UNP P21589 EXPRESSION TAG SEQADV 7QGL SER A 567 UNP P21589 EXPRESSION TAG SEQADV 7QGL HIS A 568 UNP P21589 EXPRESSION TAG SEQADV 7QGL PRO A 569 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLN A 570 UNP P21589 EXPRESSION TAG SEQADV 7QGL PHE A 571 UNP P21589 EXPRESSION TAG SEQADV 7QGL GLU A 572 UNP P21589 EXPRESSION TAG SEQADV 7QGL LYS A 573 UNP P21589 EXPRESSION TAG SEQRES 1 A 547 TRP GLU LEU THR ILE LEU HIS THR ASN ASP VAL HIS SER SEQRES 2 A 547 ARG LEU GLU GLN THR SER GLU ASP SER SER LYS CYS VAL SEQRES 3 A 547 ASP ALA SER ARG CYS MET GLY GLY VAL ALA ARG LEU PHE SEQRES 4 A 547 THR LYS VAL GLN GLN ILE ARG ARG ALA GLU PRO ASN VAL SEQRES 5 A 547 LEU LEU LEU ASP ALA GLY ASP GLN TYR GLN GLY THR ILE SEQRES 6 A 547 TRP PHE THR VAL TYR LYS GLY ALA GLU VAL ALA HIS PHE SEQRES 7 A 547 MET ASN ALA LEU ARG TYR ASP ALA MET ALA LEU GLY ASN SEQRES 8 A 547 HIS GLU PHE ASP ASN GLY VAL GLU GLY LEU ILE GLU PRO SEQRES 9 A 547 LEU LEU LYS GLU ALA LYS PHE PRO ILE LEU SER ALA ASN SEQRES 10 A 547 ILE LYS ALA LYS GLY PRO LEU ALA SER GLN ILE SER GLY SEQRES 11 A 547 LEU TYR LEU PRO TYR LYS VAL LEU PRO VAL GLY ASP GLU SEQRES 12 A 547 VAL VAL GLY ILE VAL GLY TYR THR SER LYS GLU THR PRO SEQRES 13 A 547 PHE LEU SER ASN PRO GLY THR ASN LEU VAL PHE GLU ASP SEQRES 14 A 547 GLU ILE THR ALA LEU GLN PRO GLU VAL ASP LYS LEU LYS SEQRES 15 A 547 THR LEU ASN VAL ASN LYS ILE ILE ALA LEU GLY HIS SER SEQRES 16 A 547 GLY PHE GLU MET ASP LYS LEU ILE ALA GLN LYS VAL ARG SEQRES 17 A 547 GLY VAL ASP VAL VAL VAL GLY GLY HIS SER ASN THR PHE SEQRES 18 A 547 LEU TYR THR GLY ASN PRO PRO SER LYS GLU VAL PRO ALA SEQRES 19 A 547 GLY LYS TYR PRO PHE ILE VAL THR SER ASP ASP GLY ARG SEQRES 20 A 547 LYS VAL PRO VAL VAL GLN ALA TYR ALA PHE GLY LYS TYR SEQRES 21 A 547 LEU GLY TYR LEU LYS ILE GLU PHE ASP GLU ARG GLY ASN SEQRES 22 A 547 VAL ILE SER SER HIS GLY ASN PRO ILE LEU LEU ASP SER SEQRES 23 A 547 SER ILE PRO GLU ASP PRO SER ILE LYS ALA ASP ILE ASN SEQRES 24 A 547 LYS TRP ARG ILE LYS LEU ASP ASP TYR SER THR GLN GLU SEQRES 25 A 547 LEU GLY LYS THR ILE VAL TYR LEU ASP GLY SER SER GLN SEQRES 26 A 547 SER CYS ARG PHE ARG GLU CYS ASN MET GLY ASN LEU ILE SEQRES 27 A 547 CYS ASP ALA MET ILE ASN ASN ASN LEU ARG HIS THR ASP SEQRES 28 A 547 GLU MET PHE TRP ASN HIS VAL SER MET CYS ILE LEU ASN SEQRES 29 A 547 GLY GLY GLY ILE ARG SER PRO ILE ASP GLU ARG ASN ASP SEQRES 30 A 547 GLY THR ILE THR TRP GLU ASN LEU ALA ALA VAL LEU PRO SEQRES 31 A 547 PHE GLY GLY THR PHE ASP LEU VAL GLN LEU LYS GLY SER SEQRES 32 A 547 THR LEU LYS LYS ALA PHE GLU HIS SER VAL HIS ARG TYR SEQRES 33 A 547 GLY GLN SER THR GLY GLU PHE LEU GLN VAL GLY GLY ILE SEQRES 34 A 547 HIS VAL VAL TYR ASP LEU SER ARG LYS PRO GLY ASP ARG SEQRES 35 A 547 VAL VAL LYS LEU ASP VAL LEU CYS THR SER CYS ARG VAL SEQRES 36 A 547 PRO SER TYR ASP PRO LEU LYS MET ASP GLU VAL TYR LYS SEQRES 37 A 547 VAL ILE LEU PRO ASN PHE LEU ALA ASN GLY GLY ASP GLY SEQRES 38 A 547 PHE GLN MET ILE LYS ASP GLU LEU LEU ARG HIS ASP SER SEQRES 39 A 547 GLY ASP GLN ASP ILE ASN VAL VAL SER THR TYR ILE SER SEQRES 40 A 547 LYS MET LYS VAL ILE TYR PRO ALA VAL GLU GLY ARG ILE SEQRES 41 A 547 LYS PHE SER GLY GLY GLY GLY ALA GLY GLY GLY GLY GLY SEQRES 42 A 547 THR ASP ASP ASP ASP LYS TRP SER HIS PRO GLN PHE GLU SEQRES 43 A 547 LYS HET ZN A 601 1 HET ZN A 602 1 HET CA A 603 1 HET BW0 A 604 65 HET 1PE A 605 13 HET 1PE A 606 13 HET 1PE A 607 16 HET 1PE A 608 10 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM BW0 [[(2~{R},3~{S},4~{R},5~{R})-5-[(4~{E})-4-[(4- HETNAM 2 BW0 METHOXYCARBONYLPHENYL)METHOXYIMINO]-3-METHYL-2- HETNAM 3 BW0 OXIDANYLIDENE-PYRIMIDIN-1-YL]-3,4-BIS(OXIDANYL)OXOLAN- HETNAM 4 BW0 2-YL]METHOXY-OXIDANYL-PHOSPHORYL]METHYLPHOSPHONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 BW0 C20 H27 N3 O13 P2 FORMUL 6 1PE 4(C10 H22 O6) FORMUL 10 HOH *652(H2 O) HELIX 1 AA1 ASP A 53 CYS A 57 5 5 HELIX 2 AA2 GLY A 60 GLU A 75 1 16 HELIX 3 AA3 THR A 90 LYS A 97 1 8 HELIX 4 AA4 GLY A 98 LEU A 108 1 11 HELIX 5 AA5 GLY A 116 ASP A 121 5 6 HELIX 6 AA6 VAL A 124 GLU A 129 1 6 HELIX 7 AA7 PRO A 130 ALA A 135 1 6 HELIX 8 AA8 GLY A 148 SER A 155 1 8 HELIX 9 AA9 GLU A 180 LEU A 184 5 5 HELIX 10 AB1 ASP A 195 LEU A 210 1 16 HELIX 11 AB2 GLY A 222 VAL A 233 1 12 HELIX 12 AB3 ASP A 317 THR A 336 1 20 HELIX 13 AB4 SER A 349 ARG A 354 1 6 HELIX 14 AB5 CYS A 358 ASN A 372 1 15 HELIX 15 AB6 GLY A 392 ILE A 394 5 3 HELIX 16 AB7 TRP A 408 LEU A 415 1 8 HELIX 17 AB8 GLY A 428 HIS A 440 1 13 HELIX 18 AB9 ASN A 499 ASN A 503 1 5 HELIX 19 AC1 GLY A 504 GLY A 507 5 4 HELIX 20 AC2 PHE A 508 LEU A 515 1 8 HELIX 21 AC3 ASP A 524 LYS A 536 1 13 SHEET 1 AA1 6 ILE A 139 LEU A 140 0 SHEET 2 AA1 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA1 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA1 6 GLU A 28 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA1 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA1 6 VAL A 300 GLY A 305 -1 O HIS A 304 N LYS A 291 SHEET 1 AA2 6 ILE A 139 LEU A 140 0 SHEET 2 AA2 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA2 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA2 6 GLU A 28 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA2 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA2 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 AA3 2 ILE A 144 ALA A 146 0 SHEET 2 AA3 2 LEU A 191 PHE A 193 -1 O VAL A 192 N LYS A 145 SHEET 1 AA4 6 TYR A 161 VAL A 166 0 SHEET 2 AA4 6 GLU A 169 THR A 177 -1 O VAL A 171 N LEU A 164 SHEET 3 AA4 6 ILE A 215 HIS A 220 1 O ILE A 216 N GLY A 172 SHEET 4 AA4 6 VAL A 238 VAL A 240 1 O VAL A 240 N ALA A 217 SHEET 5 AA4 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239 SHEET 6 AA4 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 AA5 3 THR A 405 THR A 407 0 SHEET 2 AA5 3 GLU A 338 THR A 342 -1 N LEU A 339 O ILE A 406 SHEET 3 AA5 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 AA6 5 LEU A 450 GLY A 453 0 SHEET 2 AA6 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 AA6 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386 SHEET 4 AA6 5 THR A 420 LYS A 427 -1 N LEU A 426 O TYR A 493 SHEET 5 AA6 5 ARG A 517 GLN A 523 -1 O ASP A 519 N LEU A 423 SHEET 1 AA7 4 TYR A 484 PRO A 486 0 SHEET 2 AA7 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485 SHEET 3 AA7 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473 SHEET 4 AA7 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459 SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.03 SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.06 SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.03 SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.03 LINK OD1 ASP A 36 ZN ZN A 602 1555 1555 2.00 LINK NE2 HIS A 38 ZN ZN A 602 1555 1555 2.03 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.21 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.25 LINK OD1 ASN A 117 ZN ZN A 601 1555 1555 2.07 LINK O ASN A 213 CA CA A 603 1555 1555 2.32 LINK NE2 HIS A 220 ZN ZN A 601 1555 1555 2.01 LINK OD1 ASP A 237 CA CA A 603 1555 1555 2.38 LINK OD2 ASP A 237 CA CA A 603 1555 1555 2.43 LINK ND1 HIS A 243 ZN ZN A 601 1555 1555 2.08 LINK O GLY A 298 CA CA A 603 1555 1555 2.28 LINK ZN ZN A 601 O HOH A 759 1555 1555 2.02 LINK ZN ZN A 602 O HOH A 721 1555 1555 2.11 LINK ZN ZN A 602 O HOH A 759 1555 1555 2.00 LINK CA CA A 603 OH3 1PE A 607 1555 1555 2.24 LINK CA CA A 603 O HOH A 764 1555 1555 2.64 CISPEP 1 GLU A 129 PRO A 130 0 16.43 CISPEP 2 TYR A 263 PRO A 264 0 -11.24 CRYST1 66.856 129.841 65.797 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015198 0.00000