HEADER RNA BINDING PROTEIN 14-DEC-21 7QHY TITLE STRUCTURE OF A KLUYVEROMYCES LACTIS PROTEIN INVOLVED IN RNA DECAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSENSE-MEDIATED DECAY PROTEIN 4,NONSENSE-MEDIATED DECAY COMPND 3 PROTEIN 4,NONSENSE MEDIATED MRNA DECAY PROTEIN 4 (NMD4); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS; SOURCE 3 ORGANISM_TAXID: 28985; SOURCE 4 STRAIN: ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / SOURCE 5 WM37; SOURCE 6 GENE: NMD4, KLLA0B08107G, KDRO_E07780; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA DECAY, PIN DOMAIN, ALPHAFOLD MODEL, ROSETTAFOLD MODEL, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.BARBARIN-BOCAHU,M.GRAILLE REVDAT 3 01-MAY-24 7QHY 1 REMARK REVDAT 2 13-APR-22 7QHY 1 JRNL REVDAT 1 23-MAR-22 7QHY 0 JRNL AUTH I.BARBARIN-BOCAHU,M.GRAILLE JRNL TITL THE X-RAY CRYSTALLOGRAPHY PHASE PROBLEM SOLVED THANKS TO JRNL TITL 2 ALPHAFOLD AND ROSETTAFOLD MODELS: A CASE-STUDY REPORT. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 517 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 35362474 JRNL DOI 10.1107/S2059798322002157 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2762 REMARK 3 BIN FREE R VALUE : 0.4208 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.84880 REMARK 3 B22 (A**2) : -2.84880 REMARK 3 B33 (A**2) : 5.69750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.380 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.299 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.237 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.301 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.240 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3050 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4115 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1066 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 493 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3050 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 406 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2313 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.97 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.83 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.4236 0.6196 10.542 REMARK 3 T TENSOR REMARK 3 T11: -0.0942 T22: 0.2556 REMARK 3 T33: -0.1381 T12: 0.2351 REMARK 3 T13: -0.013 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 3.8798 L22: 1.4747 REMARK 3 L33: 3.617 L12: -0.3852 REMARK 3 L13: -1.4439 L23: 0.1227 REMARK 3 S TENSOR REMARK 3 S11: 0.3942 S12: -0.1462 S13: -0.2954 REMARK 3 S21: -0.1462 S22: -0.398 S23: -0.563 REMARK 3 S31: -0.2954 S32: -0.563 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.9638 -27.1327 -4.5071 REMARK 3 T TENSOR REMARK 3 T11: -0.1655 T22: -0.0328 REMARK 3 T33: 0.1113 T12: 0.2042 REMARK 3 T13: -0.0382 T23: -0.1271 REMARK 3 L TENSOR REMARK 3 L11: 4.6879 L22: 3.0844 REMARK 3 L33: 4.3228 L12: -0.9993 REMARK 3 L13: 0.4862 L23: 0.2292 REMARK 3 S TENSOR REMARK 3 S11: 0.2366 S12: -0.2334 S13: -0.313 REMARK 3 S21: -0.2334 S22: -0.274 S23: -0.2082 REMARK 3 S31: -0.313 S32: -0.2082 S33: 0.0374 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 43.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 59.80 REMARK 200 R MERGE (I) : 0.01150 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.89700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: ALPHAFOLD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 0.9-1 M REMARK 280 LI2SO4 AND 0.6 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.20667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.10333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.10333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 116.20667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A 129 REMARK 465 HIS A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 ASP A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 ILE A 136 REMARK 465 ASP A 137 REMARK 465 HIS A 138 REMARK 465 THR A 139 REMARK 465 ASN A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 SER A 143 REMARK 465 ASP A 144 REMARK 465 PRO A 145 REMARK 465 LYS A 185 REMARK 465 ASP A 186 REMARK 465 LYS A 187 REMARK 465 SER A 188 REMARK 465 TYR A 189 REMARK 465 LYS A 193A REMARK 465 PHE A 193B REMARK 465 SER A 193C REMARK 465 LYS A 193D REMARK 465 THR A 193E REMARK 465 VAL A 193F REMARK 465 ILE A 193G REMARK 465 LYS A 193H REMARK 465 LYS A 193I REMARK 465 ALA A 193J REMARK 465 ASN A 193K REMARK 465 LYS A 193L REMARK 465 VAL A 193M REMARK 465 LYS A 193N REMARK 465 GLU A 193O REMARK 465 GLN A 193P REMARK 465 GLU A 193Q REMARK 465 ASP A 193R REMARK 465 GLY A 193S REMARK 465 LYS A 193T REMARK 465 LYS A 193U REMARK 465 VAL A 193V REMARK 465 PHE A 193W REMARK 465 VAL A 193X REMARK 465 THR A 193Y REMARK 465 UNK A 193Z REMARK 465 UNK A 194A REMARK 465 UNK A 194B REMARK 465 UNK A 194C REMARK 465 UNK A 194D REMARK 465 SER A 229 REMARK 465 PRO A 235 REMARK 465 THR A 236 REMARK 465 SER A 237 REMARK 465 ALA A 238 REMARK 465 LYS A 239 REMARK 465 ASN A 240 REMARK 465 LYS A 241 REMARK 465 SER A 242 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 HIS B 130 REMARK 465 ASP B 131 REMARK 465 LEU B 132 REMARK 465 ASP B 133 REMARK 465 GLU B 134 REMARK 465 ASP B 135 REMARK 465 ILE B 136 REMARK 465 ASP B 137 REMARK 465 HIS B 138 REMARK 465 THR B 139 REMARK 465 ASN B 140 REMARK 465 GLU B 141 REMARK 465 LYS B 142 REMARK 465 SER B 143 REMARK 465 ASP B 144 REMARK 465 PRO B 145 REMARK 465 ASP B 146 REMARK 465 ASP B 185A REMARK 465 LYS B 185B REMARK 465 SER B 185C REMARK 465 TYR B 185D REMARK 465 VAL B 185E REMARK 465 VAL B 185F REMARK 465 ASN B 185G REMARK 465 GLU B 185H REMARK 465 LYS B 185I REMARK 465 PHE B 185J REMARK 465 SER B 185K REMARK 465 LYS B 185L REMARK 465 THR B 185M REMARK 465 VAL B 185N REMARK 465 ILE B 185O REMARK 465 LYS B 185P REMARK 465 LYS B 185Q REMARK 465 ALA B 185R REMARK 465 ASN B 185S REMARK 465 LYS B 185T REMARK 465 VAL B 185U REMARK 465 LYS B 185V REMARK 465 GLU B 185W REMARK 465 GLN B 185X REMARK 465 GLU B 185Y REMARK 465 ASP B 185Z REMARK 465 GLY B 186A REMARK 465 LYS B 186B REMARK 465 LYS B 186C REMARK 465 VAL B 186D REMARK 465 PHE B 186E REMARK 465 VAL B 186F REMARK 465 THR B 186G REMARK 465 UNK B 186H REMARK 465 UNK B 186I REMARK 465 UNK B 186J REMARK 465 UNK B 186K REMARK 465 UNK B 186L REMARK 465 ASP B 186M REMARK 465 PHE B 186N REMARK 465 LYS B 186O REMARK 465 ASN B 186P REMARK 465 ASP B 186Q REMARK 465 PHE B 186R REMARK 465 LEU B 186S REMARK 465 ALA B 186T REMARK 465 PRO B 186U REMARK 465 ARG B 186V REMARK 465 ALA B 186W REMARK 465 LYS B 186X REMARK 465 SER B 186Y REMARK 465 GLY B 186Z REMARK 465 GLU B 187A REMARK 465 LEU B 187B REMARK 465 TRP B 187C REMARK 465 THR B 187D REMARK 465 PRO B 187E REMARK 465 THR B 187F REMARK 465 SER B 187G REMARK 465 ALA B 187H REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 65.53 -119.66 REMARK 500 GLN A 95 -70.79 -72.89 REMARK 500 GLN A 96 -82.70 -49.12 REMARK 500 ASP A 147 58.09 -108.09 REMARK 500 LYS B 24 38.72 -97.99 REMARK 500 THR B 100 56.94 -116.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QHY A 2 193Y UNP Q6CVZ8 NMD4_KLULA 2 218 DBREF 7QHY A 193Z 194D PDB 7QHY 7QHY 193 194 DBREF 7QHY A 217 242 UNP Q6CVZ8 NMD4_KLULA 219 244 DBREF 7QHY B 2 186G UNP Q6CVZ8 NMD4_KLULA 2 218 DBREF 7QHY B 186H 186L PDB 7QHY 7QHY 186 186 DBREF 7QHY B 186M 245 UNP Q6CVZ8 NMD4_KLULA 219 244 SEQADV 7QHY GLY A -2 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY PRO A -1 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY GLY A 0 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY SER A 1 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY GLY B -2 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY PRO B -1 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY GLY B 0 UNP Q6CVZ8 EXPRESSION TAG SEQADV 7QHY SER B 1 UNP Q6CVZ8 EXPRESSION TAG SEQRES 1 A 252 GLY PRO GLY SER ILE LEU ASN PHE ILE ILE ASP SER SER SEQRES 2 A 252 SER PHE GLU LYS GLY LEU GLY ASN ILE ALA ILE TRP SER SEQRES 3 A 252 LYS LEU ASN ASP PRO LYS LEU THR ILE ASN ALA TYR LEU SEQRES 4 A 252 PRO LEU PHE THR ILE GLN GLU LEU ASP PHE GLN ARG PHE SEQRES 5 A 252 LYS ARG LYS SER VAL VAL ALA LYS ARG ALA LEU HIS PHE SEQRES 6 A 252 ILE ASP LEU LEU GLN ASP SER THR SER PHE LYS LEU HIS SEQRES 7 A 252 LEU GLU TYR PRO GLU LEU ASN GLU ALA ILE SER TRP ASN SEQRES 8 A 252 GLU THR VAL LYS LEU CYS GLN GLN ASN SER HIS THR SER SEQRES 9 A 252 LEU SER GLN HIS GLN ILE SER VAL ILE PRO ILE ARG PHE SEQRES 10 A 252 LYS LYS LEU LEU LYS SER CYS TYR TYR LYS CYS HIS TYR SEQRES 11 A 252 LYS SER HIS ASP LEU ASP GLU ASP ILE ASP HIS THR ASN SEQRES 12 A 252 GLU LYS SER ASP PRO ASP ASP LYS GLY TRP VAL LEU VAL SEQRES 13 A 252 THR GLU ASP ASP THR VAL ARG SER LEU ALA THR GLN PHE SEQRES 14 A 252 GLN ILE PRO PHE ILE SER VAL VAL GLU ALA ASP ALA ILE SEQRES 15 A 252 ILE ASN ALA CYS ILE LYS ASP LYS SER TYR VAL VAL ASN SEQRES 16 A 252 GLU LYS PHE SER LYS THR VAL ILE LYS LYS ALA ASN LYS SEQRES 17 A 252 VAL LYS GLU GLN GLU ASP GLY LYS LYS VAL PHE VAL THR SEQRES 18 A 252 UNK UNK UNK UNK UNK ASP PHE LYS ASN ASP PHE LEU ALA SEQRES 19 A 252 PRO ARG ALA LYS SER GLY GLU LEU TRP THR PRO THR SER SEQRES 20 A 252 ALA LYS ASN LYS SER SEQRES 1 B 252 GLY PRO GLY SER ILE LEU ASN PHE ILE ILE ASP SER SER SEQRES 2 B 252 SER PHE GLU LYS GLY LEU GLY ASN ILE ALA ILE TRP SER SEQRES 3 B 252 LYS LEU ASN ASP PRO LYS LEU THR ILE ASN ALA TYR LEU SEQRES 4 B 252 PRO LEU PHE THR ILE GLN GLU LEU ASP PHE GLN ARG PHE SEQRES 5 B 252 LYS ARG LYS SER VAL VAL ALA LYS ARG ALA LEU HIS PHE SEQRES 6 B 252 ILE ASP LEU LEU GLN ASP SER THR SER PHE LYS LEU HIS SEQRES 7 B 252 LEU GLU TYR PRO GLU LEU ASN GLU ALA ILE SER TRP ASN SEQRES 8 B 252 GLU THR VAL LYS LEU CYS GLN GLN ASN SER HIS THR SER SEQRES 9 B 252 LEU SER GLN HIS GLN ILE SER VAL ILE PRO ILE ARG PHE SEQRES 10 B 252 LYS LYS LEU LEU LYS SER CYS TYR TYR LYS CYS HIS TYR SEQRES 11 B 252 LYS SER HIS ASP LEU ASP GLU ASP ILE ASP HIS THR ASN SEQRES 12 B 252 GLU LYS SER ASP PRO ASP ASP LYS GLY TRP VAL LEU VAL SEQRES 13 B 252 THR GLU ASP ASP THR VAL ARG SER LEU ALA THR GLN PHE SEQRES 14 B 252 GLN ILE PRO PHE ILE SER VAL VAL GLU ALA ASP ALA ILE SEQRES 15 B 252 ILE ASN ALA CYS ILE LYS ASP LYS SER TYR VAL VAL ASN SEQRES 16 B 252 GLU LYS PHE SER LYS THR VAL ILE LYS LYS ALA ASN LYS SEQRES 17 B 252 VAL LYS GLU GLN GLU ASP GLY LYS LYS VAL PHE VAL THR SEQRES 18 B 252 UNK UNK UNK UNK UNK ASP PHE LYS ASN ASP PHE LEU ALA SEQRES 19 B 252 PRO ARG ALA LYS SER GLY GLU LEU TRP THR PRO THR SER SEQRES 20 B 252 ALA LYS ASN LYS SER HET SO4 A 301 5 HET SO4 A 302 5 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET SO4 B 305 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 10 HOH *33(H2 O) HELIX 1 AA1 ASP A 8 SER A 23 1 16 HELIX 2 AA2 PRO A 37 LYS A 50 1 14 HELIX 3 AA3 SER A 53 LEU A 66 1 14 HELIX 4 AA4 TYR A 78 ILE A 85 1 8 HELIX 5 AA5 SER A 86 GLN A 96 1 11 HELIX 6 AA6 SER A 103 VAL A 109 1 7 HELIX 7 AA7 PRO A 111 HIS A 126 1 16 HELIX 8 AA8 ASP A 156 PHE A 166 1 11 HELIX 9 AA9 SER A 172 ILE A 184 1 13 HELIX 10 AB1 PHE A 218 LEU A 223 1 6 HELIX 11 AB2 ASP B 8 LYS B 24 1 17 HELIX 12 AB3 PRO B 37 LYS B 50 1 14 HELIX 13 AB4 SER B 53 LEU B 66 1 14 HELIX 14 AB5 TYR B 78 ILE B 85 1 8 HELIX 15 AB6 SER B 86 GLN B 96 1 11 HELIX 16 AB7 SER B 103 VAL B 109 1 7 HELIX 17 AB8 PRO B 111 HIS B 126 1 16 HELIX 18 AB9 ASP B 156 PHE B 166 1 11 HELIX 19 AC1 SER B 172 LYS B 185 1 14 SHEET 1 AA1 5 PHE A 72 LEU A 76 0 SHEET 2 AA1 5 LEU A 30 LEU A 36 1 N ILE A 32 O LYS A 73 SHEET 3 AA1 5 SER A 1 ILE A 7 1 N PHE A 5 O TYR A 35 SHEET 4 AA1 5 VAL A 151 VAL A 153 1 O VAL A 153 N ILE A 6 SHEET 5 AA1 5 PHE A 170 ILE A 171 1 O ILE A 171 N LEU A 152 SHEET 1 AA2 5 PHE B 72 LEU B 76 0 SHEET 2 AA2 5 THR B 31 LEU B 36 1 N ILE B 32 O LYS B 73 SHEET 3 AA2 5 ILE B 2 ILE B 7 1 N LEU B 3 O ASN B 33 SHEET 4 AA2 5 VAL B 151 VAL B 153 1 O VAL B 153 N ILE B 6 SHEET 5 AA2 5 PHE B 170 ILE B 171 1 O ILE B 171 N LEU B 152 CRYST1 76.820 76.820 174.310 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013017 0.007516 0.000000 0.00000 SCALE2 0.000000 0.015031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005737 0.00000