HEADER MEMBRANE PROTEIN 14-DEC-21 7QI2 TITLE MAGIC-ANGLE SPINNING NMR STRUCTURE OF THE HUMAN VOLTAGE-DEPENDENT TITLE 2 ANION CHANNEL 1 (E73V/C127A/C232S) IN DMPC LIPID BILAYERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDAC-1,HVDAC1,OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN 1, COMPND 5 PLASMALEMMAL PORIN,PORIN 31HL,PORIN 31HM; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VDAC1, VDAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS SOLID-STATE NMR SPECTROSCOPY, MAGIC-ANGLE SPINNING, GATING, VOLTAGE- KEYWDS 2 DEPENDENT ANION CHANNEL, MEMBRANE PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR E.E.NAJBAUER,L.B.ANDREAS REVDAT 2 14-JUN-23 7QI2 1 REMARK REVDAT 1 16-MAR-22 7QI2 0 JRNL AUTH E.E.NAJBAUER,K.TEKWANI MOVELLAN,K.GILLER,R.BENZ,S.BECKER, JRNL AUTH 2 C.GRIESINGER,L.B.ANDREAS JRNL TITL STRUCTURE AND GATING BEHAVIOR OF THE HUMAN INTEGRAL MEMBRANE JRNL TITL 2 PROTEIN VDAC1 IN A LIPID BILAYER. JRNL REF J.AM.CHEM.SOC. V. 144 2953 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35164499 JRNL DOI 10.1021/JACS.1C09848 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119469. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.21 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 66 % W/W [U-13C; U-15N; U-2H] REMARK 210 U[2H,13C,15N]-HVDAC1(E73V/C127A/C232S), 33 % W/W DMPC, 10 MM MES, REMARK 210 150 MM SODIUM CHLORIDE, 20 MM MGCL2, 100% H2O; 66 % W/W [U-13C; REMARK 210 U-15N]-ALPHA PET U[2H,13C,15N]-HVDAC1(E73V/C127A/C232S), 33 % W/ REMARK 210 W DMPC, 10 MM MES, 150 MM SODIUM CHLORIDE, 20 MM MGCL2, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HCANH; HCOCACONH; HCONH; REMARK 210 HCOCANH; HCACBCANH; HCACBCACONH; REMARK 210 HNCACONH; HNCOCANH; HNHHNH; REMARK 210 HNCAH; HNCOCAH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98.13, SPARKY 3.113, REMARK 210 TOPSPIN 3.5PL7 REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 284 REMARK 465 GLU A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 68.12 -117.56 REMARK 500 1 PRO A 5 77.97 -69.79 REMARK 500 1 LYS A 32 -169.57 68.47 REMARK 500 1 THR A 51 49.46 -88.51 REMARK 500 1 TYR A 67 -71.50 -131.80 REMARK 500 1 ASN A 76 -157.07 159.25 REMARK 500 1 LEU A 81 -52.09 -129.93 REMARK 500 1 ASP A 89 -74.85 -59.64 REMARK 500 1 GLN A 90 -56.08 -121.37 REMARK 500 1 SER A 101 36.62 -90.83 REMARK 500 1 PRO A 105 86.94 -69.73 REMARK 500 1 ARG A 120 137.77 -175.66 REMARK 500 1 PHE A 131 178.92 179.51 REMARK 500 1 ASP A 132 -75.65 -86.82 REMARK 500 1 ILE A 133 -41.87 -133.20 REMARK 500 1 ALA A 134 -167.46 -61.30 REMARK 500 1 GLU A 147 105.32 -51.77 REMARK 500 1 GLN A 166 92.46 -65.56 REMARK 500 1 SER A 167 120.00 -163.23 REMARK 500 1 VAL A 198 -66.66 -102.74 REMARK 500 1 ARG A 218 53.87 -142.13 REMARK 500 1 SER A 241 37.79 71.49 REMARK 500 1 LYS A 252 -61.19 -179.70 REMARK 500 2 TYR A 22 36.02 -94.14 REMARK 500 2 PHE A 24 171.96 -53.19 REMARK 500 2 LEU A 26 165.01 179.22 REMARK 500 2 GLU A 36 -60.92 -100.75 REMARK 500 2 ASN A 37 -75.54 -54.33 REMARK 500 2 LEU A 39 115.66 -173.98 REMARK 500 2 GLU A 50 -169.65 -59.69 REMARK 500 2 THR A 51 167.68 -49.89 REMARK 500 2 THR A 52 108.24 -51.09 REMARK 500 2 LYS A 53 78.68 -154.07 REMARK 500 2 SER A 57 143.10 174.29 REMARK 500 2 LEU A 58 -138.35 164.61 REMARK 500 2 TYR A 67 89.82 -66.10 REMARK 500 2 TRP A 75 -172.66 -176.38 REMARK 500 2 ASP A 78 -46.76 -150.10 REMARK 500 2 ASN A 79 -76.08 -142.63 REMARK 500 2 THR A 80 160.68 178.25 REMARK 500 2 LEU A 81 -76.10 -150.41 REMARK 500 2 ASP A 89 -71.56 -113.71 REMARK 500 2 SER A 101 36.46 -90.15 REMARK 500 2 PRO A 105 91.58 -69.88 REMARK 500 2 THR A 107 -178.64 -65.48 REMARK 500 2 ARG A 120 -169.60 -126.25 REMARK 500 2 ASP A 132 -73.00 -95.75 REMARK 500 2 ILE A 133 122.80 -177.12 REMARK 500 2 TYR A 146 177.16 -56.83 REMARK 500 2 ARG A 163 47.56 -109.93 REMARK 500 REMARK 500 THIS ENTRY HAS 291 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34694 RELATED DB: BMRB REMARK 900 MAGIC-ANGLE SPINNING NMR STRUCTURE OF THE HUMAN VOLTAGE-DEPENDENT REMARK 900 ANION CHANNEL 1 (E73V/C127A/C232S) IN DMPC LIPID BILAYERS DBREF 7QI2 A 1 283 UNP P21796 VDAC1_HUMAN 1 283 SEQADV 7QI2 VAL A 73 UNP P21796 GLU 73 ENGINEERED MUTATION SEQADV 7QI2 ALA A 127 UNP P21796 CYS 127 ENGINEERED MUTATION SEQADV 7QI2 SER A 232 UNP P21796 CYS 232 ENGINEERED MUTATION SEQADV 7QI2 LEU A 284 UNP P21796 EXPRESSION TAG SEQADV 7QI2 GLU A 285 UNP P21796 EXPRESSION TAG SEQADV 7QI2 HIS A 286 UNP P21796 EXPRESSION TAG SEQADV 7QI2 HIS A 287 UNP P21796 EXPRESSION TAG SEQADV 7QI2 HIS A 288 UNP P21796 EXPRESSION TAG SEQADV 7QI2 HIS A 289 UNP P21796 EXPRESSION TAG SEQADV 7QI2 HIS A 290 UNP P21796 EXPRESSION TAG SEQADV 7QI2 HIS A 291 UNP P21796 EXPRESSION TAG SEQRES 1 A 291 MET ALA VAL PRO PRO THR TYR ALA ASP LEU GLY LYS SER SEQRES 2 A 291 ALA ARG ASP VAL PHE THR LYS GLY TYR GLY PHE GLY LEU SEQRES 3 A 291 ILE LYS LEU ASP LEU LYS THR LYS SER GLU ASN GLY LEU SEQRES 4 A 291 GLU PHE THR SER SER GLY SER ALA ASN THR GLU THR THR SEQRES 5 A 291 LYS VAL THR GLY SER LEU GLU THR LYS TYR ARG TRP THR SEQRES 6 A 291 GLU TYR GLY LEU THR PHE THR VAL LYS TRP ASN THR ASP SEQRES 7 A 291 ASN THR LEU GLY THR GLU ILE THR VAL GLU ASP GLN LEU SEQRES 8 A 291 ALA ARG GLY LEU LYS LEU THR PHE ASP SER SER PHE SER SEQRES 9 A 291 PRO ASN THR GLY LYS LYS ASN ALA LYS ILE LYS THR GLY SEQRES 10 A 291 TYR LYS ARG GLU HIS ILE ASN LEU GLY ALA ASP MET ASP SEQRES 11 A 291 PHE ASP ILE ALA GLY PRO SER ILE ARG GLY ALA LEU VAL SEQRES 12 A 291 LEU GLY TYR GLU GLY TRP LEU ALA GLY TYR GLN MET ASN SEQRES 13 A 291 PHE GLU THR ALA LYS SER ARG VAL THR GLN SER ASN PHE SEQRES 14 A 291 ALA VAL GLY TYR LYS THR ASP GLU PHE GLN LEU HIS THR SEQRES 15 A 291 ASN VAL ASN ASP GLY THR GLU PHE GLY GLY SER ILE TYR SEQRES 16 A 291 GLN LYS VAL ASN LYS LYS LEU GLU THR ALA VAL ASN LEU SEQRES 17 A 291 ALA TRP THR ALA GLY ASN SER ASN THR ARG PHE GLY ILE SEQRES 18 A 291 ALA ALA LYS TYR GLN ILE ASP PRO ASP ALA SER PHE SER SEQRES 19 A 291 ALA LYS VAL ASN ASN SER SER LEU ILE GLY LEU GLY TYR SEQRES 20 A 291 THR GLN THR LEU LYS PRO GLY ILE LYS LEU THR LEU SER SEQRES 21 A 291 ALA LEU LEU ASP GLY LYS ASN VAL ASN ALA GLY GLY HIS SEQRES 22 A 291 LYS LEU GLY LEU GLY LEU GLU PHE GLN ALA LEU GLU HIS SEQRES 23 A 291 HIS HIS HIS HIS HIS HELIX 1 AA1 THR A 6 LEU A 10 5 5 HELIX 2 AA2 LYS A 12 VAL A 17 1 6 HELIX 3 AA3 PHE A 18 TYR A 22 5 5 SHEET 1 AA120 ILE A 27 THR A 33 0 SHEET 2 AA120 GLU A 40 ALA A 47 -1 O SER A 43 N LEU A 31 SHEET 3 AA120 THR A 55 ARG A 63 -1 O LYS A 61 N GLU A 40 SHEET 4 AA120 THR A 70 THR A 77 -1 O PHE A 71 N TYR A 62 SHEET 5 AA120 THR A 83 VAL A 87 -1 O GLU A 84 N THR A 72 SHEET 6 AA120 LYS A 96 SER A 101 -1 O LEU A 97 N VAL A 87 SHEET 7 AA120 ALA A 112 TYR A 118 -1 O LYS A 115 N THR A 98 SHEET 8 AA120 ILE A 123 PHE A 131 -1 O MET A 129 N ILE A 114 SHEET 9 AA120 SER A 137 LEU A 144 -1 O ALA A 141 N GLY A 126 SHEET 10 AA120 TRP A 149 MET A 155 -1 O ALA A 151 N LEU A 144 SHEET 11 AA120 ASN A 168 LYS A 174 -1 O ALA A 170 N GLY A 152 SHEET 12 AA120 GLN A 179 ASN A 185 -1 O VAL A 184 N PHE A 169 SHEET 13 AA120 GLU A 189 ASN A 199 -1 O GLY A 191 N ASN A 183 SHEET 14 AA120 LEU A 202 TRP A 210 -1 O LEU A 208 N GLY A 192 SHEET 15 AA120 ARG A 218 TYR A 225 -1 O ALA A 222 N ALA A 205 SHEET 16 AA120 SER A 232 VAL A 237 -1 O PHE A 233 N TYR A 225 SHEET 17 AA120 ILE A 243 THR A 250 -1 O GLY A 246 N SER A 234 SHEET 18 AA120 LYS A 256 ASP A 264 -1 O LEU A 259 N TYR A 247 SHEET 19 AA120 GLY A 272 PHE A 281 -1 O LYS A 274 N LEU A 262 SHEET 20 AA120 ILE A 27 THR A 33 1 N LYS A 28 O LEU A 279 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1