data_7QIG # _entry.id 7QIG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7QIG pdb_00007qig 10.2210/pdb7qig/pdb WWPDB D_1292119739 ? ? EMDB EMD-13989 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Infectious mouse-adapted RML scrapie prion fibril purified from terminally-infected mouse brains' _pdbx_database_related.db_id EMD-13989 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7QIG _pdbx_database_status.recvd_initial_deposition_date 2021-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Manka, S.W.' 1 0000-0001-6733-146X 'Zhang, W.' 2 0000-0002-3011-9956 'Wenborn, A.' 3 ? 'Betts, J.' 4 ? 'Joiner, S.' 5 ? 'Saibil, H.R.' 6 0000-0002-2266-8891 'Collinge, J.' 7 0000-0003-2220-7566 'Wadsworth, J.D.F.' 8 0000-0002-4797-2259 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 4004 _citation.page_last 4004 _citation.title '2.7 angstrom cryo-EM structure of ex vivo RML prion fibrils.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-022-30457-7 _citation.pdbx_database_id_PubMed 35831275 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manka, S.W.' 1 0000-0001-6733-146X primary 'Zhang, W.' 2 0000-0002-3011-9956 primary 'Wenborn, A.' 3 ? primary 'Betts, J.' 4 ? primary 'Joiner, S.' 5 ? primary 'Saibil, H.R.' 6 0000-0002-2266-8891 primary 'Collinge, J.' 7 0000-0003-2220-7566 primary 'Wadsworth, J.D.F.' 8 0000-0002-4797-2259 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7QIG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Major prion protein' _entity.formula_weight 15290.103 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name PrP,PrP27-30,PrP33-35C # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;THNQWNKPSKPKTNLKHVAGAAAAGAVVGGLGGYMLGSAMSRPMIHFGNDWEDRYYRENMYRYPNQVYYRPVDQYSNQNN FVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCVTQYQKESQAYY ; _entity_poly.pdbx_seq_one_letter_code_can ;THNQWNKPSKPKTNLKHVAGAAAAGAVVGGLGGYMLGSAMSRPMIHFGNDWEDRYYRENMYRYPNQVYYRPVDQYSNQNN FVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCVTQYQKESQAYY ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 HIS n 1 3 ASN n 1 4 GLN n 1 5 TRP n 1 6 ASN n 1 7 LYS n 1 8 PRO n 1 9 SER n 1 10 LYS n 1 11 PRO n 1 12 LYS n 1 13 THR n 1 14 ASN n 1 15 LEU n 1 16 LYS n 1 17 HIS n 1 18 VAL n 1 19 ALA n 1 20 GLY n 1 21 ALA n 1 22 ALA n 1 23 ALA n 1 24 ALA n 1 25 GLY n 1 26 ALA n 1 27 VAL n 1 28 VAL n 1 29 GLY n 1 30 GLY n 1 31 LEU n 1 32 GLY n 1 33 GLY n 1 34 TYR n 1 35 MET n 1 36 LEU n 1 37 GLY n 1 38 SER n 1 39 ALA n 1 40 MET n 1 41 SER n 1 42 ARG n 1 43 PRO n 1 44 MET n 1 45 ILE n 1 46 HIS n 1 47 PHE n 1 48 GLY n 1 49 ASN n 1 50 ASP n 1 51 TRP n 1 52 GLU n 1 53 ASP n 1 54 ARG n 1 55 TYR n 1 56 TYR n 1 57 ARG n 1 58 GLU n 1 59 ASN n 1 60 MET n 1 61 TYR n 1 62 ARG n 1 63 TYR n 1 64 PRO n 1 65 ASN n 1 66 GLN n 1 67 VAL n 1 68 TYR n 1 69 TYR n 1 70 ARG n 1 71 PRO n 1 72 VAL n 1 73 ASP n 1 74 GLN n 1 75 TYR n 1 76 SER n 1 77 ASN n 1 78 GLN n 1 79 ASN n 1 80 ASN n 1 81 PHE n 1 82 VAL n 1 83 HIS n 1 84 ASP n 1 85 CYS n 1 86 VAL n 1 87 ASN n 1 88 ILE n 1 89 THR n 1 90 ILE n 1 91 LYS n 1 92 GLN n 1 93 HIS n 1 94 THR n 1 95 VAL n 1 96 THR n 1 97 THR n 1 98 THR n 1 99 THR n 1 100 LYS n 1 101 GLY n 1 102 GLU n 1 103 ASN n 1 104 PHE n 1 105 THR n 1 106 GLU n 1 107 THR n 1 108 ASP n 1 109 VAL n 1 110 LYS n 1 111 MET n 1 112 MET n 1 113 GLU n 1 114 ARG n 1 115 VAL n 1 116 VAL n 1 117 GLU n 1 118 GLN n 1 119 MET n 1 120 CYS n 1 121 VAL n 1 122 THR n 1 123 GLN n 1 124 TYR n 1 125 GLN n 1 126 LYS n 1 127 GLU n 1 128 SER n 1 129 GLN n 1 130 ALA n 1 131 TYR n 1 132 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 132 _entity_src_nat.common_name 'house mouse' _entity_src_nat.pdbx_organism_scientific 'Mus musculus' _entity_src_nat.pdbx_ncbi_taxonomy_id 10090 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ brain _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_MOUSE _struct_ref.pdbx_db_accession P04925 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;THNQWNKPSKPKTNLKHVAGAAAAGAVVGGLGGYMLGSAMSRPMIHFGNDWEDRYYRENMYRYPNQVYYRPVDQYSNQNN FVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCVTQYQKESQAYY ; _struct_ref.pdbx_align_begin 94 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7QIG A 1 ? 132 ? P04925 94 ? 225 ? 94 225 2 1 7QIG B 1 ? 132 ? P04925 94 ? 225 ? 94 225 3 1 7QIG C 1 ? 132 ? P04925 94 ? 225 ? 94 225 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7QIG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7QIG _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 ? 3294 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.669 ? 4461 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 6.857 ? 444 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.051 ? 456 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 585 ? f_plane_restr ? ? # _struct.entry_id 7QIG _struct.title 'Infectious mouse-adapted RML scrapie prion fibril purified from terminally-infected mouse brains' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7QIG _struct_keywords.text 'Prion, Amyloid, PrP, Prion protein, mouse RML scrapie strain, ex vivo prion, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 85 SG ? ? ? 1_555 A CYS 120 SG ? ? A CYS 178 A CYS 213 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? B CYS 85 SG ? ? ? 1_555 B CYS 120 SG ? ? B CYS 178 B CYS 213 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? C CYS 85 SG ? ? ? 1_555 C CYS 120 SG ? ? C CYS 178 C CYS 213 1_555 ? ? ? ? ? ? ? 2.034 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS B 2 ? ASN B 6 ? HIS B 95 ASN B 99 AA1 2 HIS A 2 ? ASN A 6 ? HIS A 95 ASN A 99 AA1 3 HIS C 2 ? ASN C 6 ? HIS C 95 ASN C 99 AA2 1 LYS B 12 ? ALA B 22 ? LYS B 105 ALA B 115 AA2 2 LYS A 12 ? ALA A 22 ? LYS A 105 ALA A 115 AA2 3 LYS C 12 ? ALA C 22 ? LYS C 105 ALA C 115 AA3 1 VAL B 27 ? VAL B 28 ? VAL B 120 VAL B 121 AA3 2 VAL A 27 ? VAL A 28 ? VAL A 120 VAL A 121 AA3 3 VAL C 27 ? VAL C 28 ? VAL C 120 VAL C 121 AA4 1 TYR B 34 ? SER B 41 ? TYR B 127 SER B 134 AA4 2 TYR A 34 ? SER A 41 ? TYR A 127 SER A 134 AA4 3 TYR C 34 ? SER C 41 ? TYR C 127 SER C 134 AA5 1 MET B 44 ? HIS B 46 ? MET B 137 HIS B 139 AA5 2 MET A 44 ? HIS A 46 ? MET A 137 HIS A 139 AA5 3 MET C 44 ? HIS C 46 ? MET C 137 HIS C 139 AA6 1 ASN B 49 ? ASP B 53 ? ASN B 142 ASP B 146 AA6 2 ASN A 49 ? ASP A 53 ? ASN A 142 ASP A 146 AA6 3 ASN C 49 ? ASP C 53 ? ASN C 142 ASP C 146 AA7 1 TYR B 56 ? ARG B 57 ? TYR B 149 ARG B 150 AA7 2 TYR A 56 ? ARG A 57 ? TYR A 149 ARG A 150 AA7 3 TYR C 56 ? ARG C 57 ? TYR C 149 ARG C 150 AA8 1 TYR B 61 ? ARG B 62 ? TYR B 154 ARG B 155 AA8 2 TYR A 61 ? ARG A 62 ? TYR A 154 ARG A 155 AA8 3 TYR C 61 ? ARG C 62 ? TYR C 154 ARG C 155 AA9 1 ASN B 65 ? TYR B 69 ? ASN B 158 TYR B 162 AA9 2 ASN A 65 ? TYR A 69 ? ASN A 158 TYR A 162 AA9 3 ASN C 65 ? TYR C 69 ? ASN C 158 TYR C 162 AB1 1 ASP B 73 ? ASN B 79 ? ASP B 166 ASN B 172 AB1 2 ASP A 73 ? ASN A 79 ? ASP A 166 ASN A 172 AB1 3 ASP C 73 ? ASN C 79 ? ASP C 166 ASN C 172 AB2 1 VAL B 82 ? THR B 98 ? VAL B 175 THR B 191 AB2 2 VAL A 82 ? MET A 112 ? VAL A 175 MET A 205 AB2 3 GLY B 101 ? MET B 112 ? GLY B 194 MET B 205 AB3 1 VAL B 82 ? THR B 98 ? VAL B 175 THR B 191 AB3 2 VAL A 82 ? MET A 112 ? VAL A 175 MET A 205 AB3 3 VAL C 82 ? MET C 112 ? VAL C 175 MET C 205 AB4 1 GLN B 118 ? LYS B 126 ? GLN B 211 LYS B 219 AB4 2 GLN A 118 ? LYS A 126 ? GLN A 211 LYS A 219 AB4 3 GLN C 118 ? LYS C 126 ? GLN C 211 LYS C 219 AB5 1 GLN B 129 ? TYR B 131 ? GLN B 222 TYR B 224 AB5 2 GLN A 129 ? TYR A 131 ? GLN A 222 TYR A 224 AB5 3 GLN C 129 ? TYR C 131 ? GLN C 222 TYR C 224 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TRP B 5 ? O TRP B 98 N GLN A 4 ? N GLN A 97 AA1 2 3 N ASN A 3 ? N ASN A 96 O HIS C 2 ? O HIS C 95 AA2 1 2 O ASN B 14 ? O ASN B 107 N LEU A 15 ? N LEU A 108 AA2 2 3 N ALA A 22 ? N ALA A 115 O ALA C 21 ? O ALA C 114 AA3 1 2 O VAL B 27 ? O VAL B 120 N VAL A 28 ? N VAL A 121 AA3 2 3 N VAL A 27 ? N VAL A 120 O VAL C 28 ? O VAL C 121 AA4 1 2 O MET B 35 ? O MET B 128 N TYR A 34 ? N TYR A 127 AA4 2 3 N MET A 35 ? N MET A 128 O TYR C 34 ? O TYR C 127 AA5 1 2 O HIS B 46 ? O HIS B 139 N ILE A 45 ? N ILE A 138 AA5 2 3 N HIS A 46 ? N HIS A 139 O ILE C 45 ? O ILE C 138 AA6 1 2 O GLU B 52 ? O GLU B 145 N TRP A 51 ? N TRP A 144 AA6 2 3 N GLU A 52 ? N GLU A 145 O TRP C 51 ? O TRP C 144 AA7 1 2 O ARG B 57 ? O ARG B 150 N TYR A 56 ? N TYR A 149 AA7 2 3 N ARG A 57 ? N ARG A 150 O TYR C 56 ? O TYR C 149 AA8 1 2 O TYR B 61 ? O TYR B 154 N ARG A 62 ? N ARG A 155 AA8 2 3 N TYR A 61 ? N TYR A 154 O ARG C 62 ? O ARG C 155 AA9 1 2 O TYR B 69 ? O TYR B 162 N TYR A 68 ? N TYR A 161 AA9 2 3 N TYR A 69 ? N TYR A 162 O TYR C 68 ? O TYR C 161 AB1 1 2 O GLN B 74 ? O GLN B 167 N TYR A 75 ? N TYR A 168 AB1 2 3 N GLN A 74 ? N GLN A 167 O TYR C 75 ? O TYR C 168 AB2 1 2 O THR B 89 ? O THR B 182 N ILE A 88 ? N ILE A 181 AB2 2 3 N GLU A 102 ? N GLU A 195 O ASN B 103 ? O ASN B 196 AB3 1 2 O THR B 89 ? O THR B 182 N ILE A 88 ? N ILE A 181 AB3 2 3 N ASN A 103 ? N ASN A 196 O GLU C 102 ? O GLU C 195 AB4 1 2 O THR B 122 ? O THR B 215 N GLN A 123 ? N GLN A 216 AB4 2 3 N THR A 122 ? N THR A 215 O GLN C 123 ? O GLN C 216 AB5 1 2 O TYR B 131 ? O TYR B 224 N ALA A 130 ? N ALA A 223 AB5 2 3 N TYR A 131 ? N TYR A 224 O ALA C 130 ? O ALA C 223 # _atom_sites.entry_id 7QIG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 94 95 THR THR A . n A 1 2 HIS 2 95 96 HIS HIS A . n A 1 3 ASN 3 96 97 ASN ASN A . n A 1 4 GLN 4 97 98 GLN GLN A . n A 1 5 TRP 5 98 99 TRP TRP A . n A 1 6 ASN 6 99 100 ASN ASN A . n A 1 7 LYS 7 100 101 LYS LYS A . n A 1 8 PRO 8 101 102 PRO PRO A . n A 1 9 SER 9 102 103 SER SER A . n A 1 10 LYS 10 103 104 LYS LYS A . n A 1 11 PRO 11 104 105 PRO PRO A . n A 1 12 LYS 12 105 106 LYS LYS A . n A 1 13 THR 13 106 107 THR THR A . n A 1 14 ASN 14 107 108 ASN ASN A . n A 1 15 LEU 15 108 109 LEU LEU A . n A 1 16 LYS 16 109 110 LYS LYS A . n A 1 17 HIS 17 110 111 HIS HIS A . n A 1 18 VAL 18 111 112 VAL VAL A . n A 1 19 ALA 19 112 113 ALA ALA A . n A 1 20 GLY 20 113 114 GLY GLY A . n A 1 21 ALA 21 114 115 ALA ALA A . n A 1 22 ALA 22 115 116 ALA ALA A . n A 1 23 ALA 23 116 117 ALA ALA A . n A 1 24 ALA 24 117 118 ALA ALA A . n A 1 25 GLY 25 118 119 GLY GLY A . n A 1 26 ALA 26 119 120 ALA ALA A . n A 1 27 VAL 27 120 121 VAL VAL A . n A 1 28 VAL 28 121 122 VAL VAL A . n A 1 29 GLY 29 122 123 GLY GLY A . n A 1 30 GLY 30 123 124 GLY GLY A . n A 1 31 LEU 31 124 125 LEU LEU A . n A 1 32 GLY 32 125 126 GLY GLY A . n A 1 33 GLY 33 126 127 GLY GLY A . n A 1 34 TYR 34 127 128 TYR TYR A . n A 1 35 MET 35 128 129 MET MET A . n A 1 36 LEU 36 129 130 LEU LEU A . n A 1 37 GLY 37 130 131 GLY GLY A . n A 1 38 SER 38 131 132 SER SER A . n A 1 39 ALA 39 132 133 ALA ALA A . n A 1 40 MET 40 133 134 MET MET A . n A 1 41 SER 41 134 135 SER SER A . n A 1 42 ARG 42 135 136 ARG ARG A . n A 1 43 PRO 43 136 137 PRO PRO A . n A 1 44 MET 44 137 138 MET MET A . n A 1 45 ILE 45 138 139 ILE ILE A . n A 1 46 HIS 46 139 140 HIS HIS A . n A 1 47 PHE 47 140 141 PHE PHE A . n A 1 48 GLY 48 141 142 GLY GLY A . n A 1 49 ASN 49 142 143 ASN ASN A . n A 1 50 ASP 50 143 144 ASP ASP A . n A 1 51 TRP 51 144 145 TRP TRP A . n A 1 52 GLU 52 145 146 GLU GLU A . n A 1 53 ASP 53 146 147 ASP ASP A . n A 1 54 ARG 54 147 148 ARG ARG A . n A 1 55 TYR 55 148 149 TYR TYR A . n A 1 56 TYR 56 149 150 TYR TYR A . n A 1 57 ARG 57 150 151 ARG ARG A . n A 1 58 GLU 58 151 152 GLU GLU A . n A 1 59 ASN 59 152 153 ASN ASN A . n A 1 60 MET 60 153 154 MET MET A . n A 1 61 TYR 61 154 155 TYR TYR A . n A 1 62 ARG 62 155 156 ARG ARG A . n A 1 63 TYR 63 156 157 TYR TYR A . n A 1 64 PRO 64 157 158 PRO PRO A . n A 1 65 ASN 65 158 159 ASN ASN A . n A 1 66 GLN 66 159 160 GLN GLN A . n A 1 67 VAL 67 160 161 VAL VAL A . n A 1 68 TYR 68 161 162 TYR TYR A . n A 1 69 TYR 69 162 163 TYR TYR A . n A 1 70 ARG 70 163 164 ARG ARG A . n A 1 71 PRO 71 164 165 PRO PRO A . n A 1 72 VAL 72 165 166 VAL VAL A . n A 1 73 ASP 73 166 167 ASP ASP A . n A 1 74 GLN 74 167 168 GLN GLN A . n A 1 75 TYR 75 168 169 TYR TYR A . n A 1 76 SER 76 169 170 SER SER A . n A 1 77 ASN 77 170 171 ASN ASN A . n A 1 78 GLN 78 171 172 GLN GLN A . n A 1 79 ASN 79 172 173 ASN ASN A . n A 1 80 ASN 80 173 174 ASN ASN A . n A 1 81 PHE 81 174 175 PHE PHE A . n A 1 82 VAL 82 175 176 VAL VAL A . n A 1 83 HIS 83 176 177 HIS HIS A . n A 1 84 ASP 84 177 178 ASP ASP A . n A 1 85 CYS 85 178 179 CYS CYS A . n A 1 86 VAL 86 179 180 VAL VAL A . n A 1 87 ASN 87 180 181 ASN ASN A . n A 1 88 ILE 88 181 182 ILE ILE A . n A 1 89 THR 89 182 183 THR THR A . n A 1 90 ILE 90 183 184 ILE ILE A . n A 1 91 LYS 91 184 185 LYS LYS A . n A 1 92 GLN 92 185 186 GLN GLN A . n A 1 93 HIS 93 186 187 HIS HIS A . n A 1 94 THR 94 187 188 THR THR A . n A 1 95 VAL 95 188 189 VAL VAL A . n A 1 96 THR 96 189 190 THR THR A . n A 1 97 THR 97 190 191 THR THR A . n A 1 98 THR 98 191 192 THR THR A . n A 1 99 THR 99 192 193 THR THR A . n A 1 100 LYS 100 193 194 LYS LYS A . n A 1 101 GLY 101 194 195 GLY GLY A . n A 1 102 GLU 102 195 196 GLU GLU A . n A 1 103 ASN 103 196 197 ASN ASN A . n A 1 104 PHE 104 197 198 PHE PHE A . n A 1 105 THR 105 198 199 THR THR A . n A 1 106 GLU 106 199 200 GLU GLU A . n A 1 107 THR 107 200 201 THR THR A . n A 1 108 ASP 108 201 202 ASP ASP A . n A 1 109 VAL 109 202 203 VAL VAL A . n A 1 110 LYS 110 203 204 LYS LYS A . n A 1 111 MET 111 204 205 MET MET A . n A 1 112 MET 112 205 206 MET MET A . n A 1 113 GLU 113 206 207 GLU GLU A . n A 1 114 ARG 114 207 208 ARG ARG A . n A 1 115 VAL 115 208 209 VAL VAL A . n A 1 116 VAL 116 209 210 VAL VAL A . n A 1 117 GLU 117 210 211 GLU GLU A . n A 1 118 GLN 118 211 212 GLN GLN A . n A 1 119 MET 119 212 213 MET MET A . n A 1 120 CYS 120 213 214 CYS CYS A . n A 1 121 VAL 121 214 215 VAL VAL A . n A 1 122 THR 122 215 216 THR THR A . n A 1 123 GLN 123 216 217 GLN GLN A . n A 1 124 TYR 124 217 218 TYR TYR A . n A 1 125 GLN 125 218 219 GLN GLN A . n A 1 126 LYS 126 219 220 LYS LYS A . n A 1 127 GLU 127 220 221 GLU GLU A . n A 1 128 SER 128 221 222 SER SER A . n A 1 129 GLN 129 222 223 GLN GLN A . n A 1 130 ALA 130 223 224 ALA ALA A . n A 1 131 TYR 131 224 225 TYR TYR A . n A 1 132 TYR 132 225 226 TYR TYR A . n B 1 1 THR 1 94 95 THR THR B . n B 1 2 HIS 2 95 96 HIS HIS B . n B 1 3 ASN 3 96 97 ASN ASN B . n B 1 4 GLN 4 97 98 GLN GLN B . n B 1 5 TRP 5 98 99 TRP TRP B . n B 1 6 ASN 6 99 100 ASN ASN B . n B 1 7 LYS 7 100 101 LYS LYS B . n B 1 8 PRO 8 101 102 PRO PRO B . n B 1 9 SER 9 102 103 SER SER B . n B 1 10 LYS 10 103 104 LYS LYS B . n B 1 11 PRO 11 104 105 PRO PRO B . n B 1 12 LYS 12 105 106 LYS LYS B . n B 1 13 THR 13 106 107 THR THR B . n B 1 14 ASN 14 107 108 ASN ASN B . n B 1 15 LEU 15 108 109 LEU LEU B . n B 1 16 LYS 16 109 110 LYS LYS B . n B 1 17 HIS 17 110 111 HIS HIS B . n B 1 18 VAL 18 111 112 VAL VAL B . n B 1 19 ALA 19 112 113 ALA ALA B . n B 1 20 GLY 20 113 114 GLY GLY B . n B 1 21 ALA 21 114 115 ALA ALA B . n B 1 22 ALA 22 115 116 ALA ALA B . n B 1 23 ALA 23 116 117 ALA ALA B . n B 1 24 ALA 24 117 118 ALA ALA B . n B 1 25 GLY 25 118 119 GLY GLY B . n B 1 26 ALA 26 119 120 ALA ALA B . n B 1 27 VAL 27 120 121 VAL VAL B . n B 1 28 VAL 28 121 122 VAL VAL B . n B 1 29 GLY 29 122 123 GLY GLY B . n B 1 30 GLY 30 123 124 GLY GLY B . n B 1 31 LEU 31 124 125 LEU LEU B . n B 1 32 GLY 32 125 126 GLY GLY B . n B 1 33 GLY 33 126 127 GLY GLY B . n B 1 34 TYR 34 127 128 TYR TYR B . n B 1 35 MET 35 128 129 MET MET B . n B 1 36 LEU 36 129 130 LEU LEU B . n B 1 37 GLY 37 130 131 GLY GLY B . n B 1 38 SER 38 131 132 SER SER B . n B 1 39 ALA 39 132 133 ALA ALA B . n B 1 40 MET 40 133 134 MET MET B . n B 1 41 SER 41 134 135 SER SER B . n B 1 42 ARG 42 135 136 ARG ARG B . n B 1 43 PRO 43 136 137 PRO PRO B . n B 1 44 MET 44 137 138 MET MET B . n B 1 45 ILE 45 138 139 ILE ILE B . n B 1 46 HIS 46 139 140 HIS HIS B . n B 1 47 PHE 47 140 141 PHE PHE B . n B 1 48 GLY 48 141 142 GLY GLY B . n B 1 49 ASN 49 142 143 ASN ASN B . n B 1 50 ASP 50 143 144 ASP ASP B . n B 1 51 TRP 51 144 145 TRP TRP B . n B 1 52 GLU 52 145 146 GLU GLU B . n B 1 53 ASP 53 146 147 ASP ASP B . n B 1 54 ARG 54 147 148 ARG ARG B . n B 1 55 TYR 55 148 149 TYR TYR B . n B 1 56 TYR 56 149 150 TYR TYR B . n B 1 57 ARG 57 150 151 ARG ARG B . n B 1 58 GLU 58 151 152 GLU GLU B . n B 1 59 ASN 59 152 153 ASN ASN B . n B 1 60 MET 60 153 154 MET MET B . n B 1 61 TYR 61 154 155 TYR TYR B . n B 1 62 ARG 62 155 156 ARG ARG B . n B 1 63 TYR 63 156 157 TYR TYR B . n B 1 64 PRO 64 157 158 PRO PRO B . n B 1 65 ASN 65 158 159 ASN ASN B . n B 1 66 GLN 66 159 160 GLN GLN B . n B 1 67 VAL 67 160 161 VAL VAL B . n B 1 68 TYR 68 161 162 TYR TYR B . n B 1 69 TYR 69 162 163 TYR TYR B . n B 1 70 ARG 70 163 164 ARG ARG B . n B 1 71 PRO 71 164 165 PRO PRO B . n B 1 72 VAL 72 165 166 VAL VAL B . n B 1 73 ASP 73 166 167 ASP ASP B . n B 1 74 GLN 74 167 168 GLN GLN B . n B 1 75 TYR 75 168 169 TYR TYR B . n B 1 76 SER 76 169 170 SER SER B . n B 1 77 ASN 77 170 171 ASN ASN B . n B 1 78 GLN 78 171 172 GLN GLN B . n B 1 79 ASN 79 172 173 ASN ASN B . n B 1 80 ASN 80 173 174 ASN ASN B . n B 1 81 PHE 81 174 175 PHE PHE B . n B 1 82 VAL 82 175 176 VAL VAL B . n B 1 83 HIS 83 176 177 HIS HIS B . n B 1 84 ASP 84 177 178 ASP ASP B . n B 1 85 CYS 85 178 179 CYS CYS B . n B 1 86 VAL 86 179 180 VAL VAL B . n B 1 87 ASN 87 180 181 ASN ASN B . n B 1 88 ILE 88 181 182 ILE ILE B . n B 1 89 THR 89 182 183 THR THR B . n B 1 90 ILE 90 183 184 ILE ILE B . n B 1 91 LYS 91 184 185 LYS LYS B . n B 1 92 GLN 92 185 186 GLN GLN B . n B 1 93 HIS 93 186 187 HIS HIS B . n B 1 94 THR 94 187 188 THR THR B . n B 1 95 VAL 95 188 189 VAL VAL B . n B 1 96 THR 96 189 190 THR THR B . n B 1 97 THR 97 190 191 THR THR B . n B 1 98 THR 98 191 192 THR THR B . n B 1 99 THR 99 192 193 THR THR B . n B 1 100 LYS 100 193 194 LYS LYS B . n B 1 101 GLY 101 194 195 GLY GLY B . n B 1 102 GLU 102 195 196 GLU GLU B . n B 1 103 ASN 103 196 197 ASN ASN B . n B 1 104 PHE 104 197 198 PHE PHE B . n B 1 105 THR 105 198 199 THR THR B . n B 1 106 GLU 106 199 200 GLU GLU B . n B 1 107 THR 107 200 201 THR THR B . n B 1 108 ASP 108 201 202 ASP ASP B . n B 1 109 VAL 109 202 203 VAL VAL B . n B 1 110 LYS 110 203 204 LYS LYS B . n B 1 111 MET 111 204 205 MET MET B . n B 1 112 MET 112 205 206 MET MET B . n B 1 113 GLU 113 206 207 GLU GLU B . n B 1 114 ARG 114 207 208 ARG ARG B . n B 1 115 VAL 115 208 209 VAL VAL B . n B 1 116 VAL 116 209 210 VAL VAL B . n B 1 117 GLU 117 210 211 GLU GLU B . n B 1 118 GLN 118 211 212 GLN GLN B . n B 1 119 MET 119 212 213 MET MET B . n B 1 120 CYS 120 213 214 CYS CYS B . n B 1 121 VAL 121 214 215 VAL VAL B . n B 1 122 THR 122 215 216 THR THR B . n B 1 123 GLN 123 216 217 GLN GLN B . n B 1 124 TYR 124 217 218 TYR TYR B . n B 1 125 GLN 125 218 219 GLN GLN B . n B 1 126 LYS 126 219 220 LYS LYS B . n B 1 127 GLU 127 220 221 GLU GLU B . n B 1 128 SER 128 221 222 SER SER B . n B 1 129 GLN 129 222 223 GLN GLN B . n B 1 130 ALA 130 223 224 ALA ALA B . n B 1 131 TYR 131 224 225 TYR TYR B . n B 1 132 TYR 132 225 226 TYR TYR B . n C 1 1 THR 1 94 95 THR THR C . n C 1 2 HIS 2 95 96 HIS HIS C . n C 1 3 ASN 3 96 97 ASN ASN C . n C 1 4 GLN 4 97 98 GLN GLN C . n C 1 5 TRP 5 98 99 TRP TRP C . n C 1 6 ASN 6 99 100 ASN ASN C . n C 1 7 LYS 7 100 101 LYS LYS C . n C 1 8 PRO 8 101 102 PRO PRO C . n C 1 9 SER 9 102 103 SER SER C . n C 1 10 LYS 10 103 104 LYS LYS C . n C 1 11 PRO 11 104 105 PRO PRO C . n C 1 12 LYS 12 105 106 LYS LYS C . n C 1 13 THR 13 106 107 THR THR C . n C 1 14 ASN 14 107 108 ASN ASN C . n C 1 15 LEU 15 108 109 LEU LEU C . n C 1 16 LYS 16 109 110 LYS LYS C . n C 1 17 HIS 17 110 111 HIS HIS C . n C 1 18 VAL 18 111 112 VAL VAL C . n C 1 19 ALA 19 112 113 ALA ALA C . n C 1 20 GLY 20 113 114 GLY GLY C . n C 1 21 ALA 21 114 115 ALA ALA C . n C 1 22 ALA 22 115 116 ALA ALA C . n C 1 23 ALA 23 116 117 ALA ALA C . n C 1 24 ALA 24 117 118 ALA ALA C . n C 1 25 GLY 25 118 119 GLY GLY C . n C 1 26 ALA 26 119 120 ALA ALA C . n C 1 27 VAL 27 120 121 VAL VAL C . n C 1 28 VAL 28 121 122 VAL VAL C . n C 1 29 GLY 29 122 123 GLY GLY C . n C 1 30 GLY 30 123 124 GLY GLY C . n C 1 31 LEU 31 124 125 LEU LEU C . n C 1 32 GLY 32 125 126 GLY GLY C . n C 1 33 GLY 33 126 127 GLY GLY C . n C 1 34 TYR 34 127 128 TYR TYR C . n C 1 35 MET 35 128 129 MET MET C . n C 1 36 LEU 36 129 130 LEU LEU C . n C 1 37 GLY 37 130 131 GLY GLY C . n C 1 38 SER 38 131 132 SER SER C . n C 1 39 ALA 39 132 133 ALA ALA C . n C 1 40 MET 40 133 134 MET MET C . n C 1 41 SER 41 134 135 SER SER C . n C 1 42 ARG 42 135 136 ARG ARG C . n C 1 43 PRO 43 136 137 PRO PRO C . n C 1 44 MET 44 137 138 MET MET C . n C 1 45 ILE 45 138 139 ILE ILE C . n C 1 46 HIS 46 139 140 HIS HIS C . n C 1 47 PHE 47 140 141 PHE PHE C . n C 1 48 GLY 48 141 142 GLY GLY C . n C 1 49 ASN 49 142 143 ASN ASN C . n C 1 50 ASP 50 143 144 ASP ASP C . n C 1 51 TRP 51 144 145 TRP TRP C . n C 1 52 GLU 52 145 146 GLU GLU C . n C 1 53 ASP 53 146 147 ASP ASP C . n C 1 54 ARG 54 147 148 ARG ARG C . n C 1 55 TYR 55 148 149 TYR TYR C . n C 1 56 TYR 56 149 150 TYR TYR C . n C 1 57 ARG 57 150 151 ARG ARG C . n C 1 58 GLU 58 151 152 GLU GLU C . n C 1 59 ASN 59 152 153 ASN ASN C . n C 1 60 MET 60 153 154 MET MET C . n C 1 61 TYR 61 154 155 TYR TYR C . n C 1 62 ARG 62 155 156 ARG ARG C . n C 1 63 TYR 63 156 157 TYR TYR C . n C 1 64 PRO 64 157 158 PRO PRO C . n C 1 65 ASN 65 158 159 ASN ASN C . n C 1 66 GLN 66 159 160 GLN GLN C . n C 1 67 VAL 67 160 161 VAL VAL C . n C 1 68 TYR 68 161 162 TYR TYR C . n C 1 69 TYR 69 162 163 TYR TYR C . n C 1 70 ARG 70 163 164 ARG ARG C . n C 1 71 PRO 71 164 165 PRO PRO C . n C 1 72 VAL 72 165 166 VAL VAL C . n C 1 73 ASP 73 166 167 ASP ASP C . n C 1 74 GLN 74 167 168 GLN GLN C . n C 1 75 TYR 75 168 169 TYR TYR C . n C 1 76 SER 76 169 170 SER SER C . n C 1 77 ASN 77 170 171 ASN ASN C . n C 1 78 GLN 78 171 172 GLN GLN C . n C 1 79 ASN 79 172 173 ASN ASN C . n C 1 80 ASN 80 173 174 ASN ASN C . n C 1 81 PHE 81 174 175 PHE PHE C . n C 1 82 VAL 82 175 176 VAL VAL C . n C 1 83 HIS 83 176 177 HIS HIS C . n C 1 84 ASP 84 177 178 ASP ASP C . n C 1 85 CYS 85 178 179 CYS CYS C . n C 1 86 VAL 86 179 180 VAL VAL C . n C 1 87 ASN 87 180 181 ASN ASN C . n C 1 88 ILE 88 181 182 ILE ILE C . n C 1 89 THR 89 182 183 THR THR C . n C 1 90 ILE 90 183 184 ILE ILE C . n C 1 91 LYS 91 184 185 LYS LYS C . n C 1 92 GLN 92 185 186 GLN GLN C . n C 1 93 HIS 93 186 187 HIS HIS C . n C 1 94 THR 94 187 188 THR THR C . n C 1 95 VAL 95 188 189 VAL VAL C . n C 1 96 THR 96 189 190 THR THR C . n C 1 97 THR 97 190 191 THR THR C . n C 1 98 THR 98 191 192 THR THR C . n C 1 99 THR 99 192 193 THR THR C . n C 1 100 LYS 100 193 194 LYS LYS C . n C 1 101 GLY 101 194 195 GLY GLY C . n C 1 102 GLU 102 195 196 GLU GLU C . n C 1 103 ASN 103 196 197 ASN ASN C . n C 1 104 PHE 104 197 198 PHE PHE C . n C 1 105 THR 105 198 199 THR THR C . n C 1 106 GLU 106 199 200 GLU GLU C . n C 1 107 THR 107 200 201 THR THR C . n C 1 108 ASP 108 201 202 ASP ASP C . n C 1 109 VAL 109 202 203 VAL VAL C . n C 1 110 LYS 110 203 204 LYS LYS C . n C 1 111 MET 111 204 205 MET MET C . n C 1 112 MET 112 205 206 MET MET C . n C 1 113 GLU 113 206 207 GLU GLU C . n C 1 114 ARG 114 207 208 ARG ARG C . n C 1 115 VAL 115 208 209 VAL VAL C . n C 1 116 VAL 116 209 210 VAL VAL C . n C 1 117 GLU 117 210 211 GLU GLU C . n C 1 118 GLN 118 211 212 GLN GLN C . n C 1 119 MET 119 212 213 MET MET C . n C 1 120 CYS 120 213 214 CYS CYS C . n C 1 121 VAL 121 214 215 VAL VAL C . n C 1 122 THR 122 215 216 THR THR C . n C 1 123 GLN 123 216 217 GLN GLN C . n C 1 124 TYR 124 217 218 TYR TYR C . n C 1 125 GLN 125 218 219 GLN GLN C . n C 1 126 LYS 126 219 220 LYS LYS C . n C 1 127 GLU 127 220 221 GLU GLU C . n C 1 128 SER 128 221 222 SER SER C . n C 1 129 GLN 129 222 223 GLN GLN C . n C 1 130 ALA 130 223 224 ALA ALA C . n C 1 131 TYR 131 224 225 TYR TYR C . n C 1 132 TYR 132 225 226 TYR TYR C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email j.wadsworth@prion.ucl.ac.uk _pdbx_contact_author.name_first Jonathan _pdbx_contact_author.name_last Wadsworth _pdbx_contact_author.name_mi DF _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4797-2259 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-07-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7QIG _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7QIG _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 119390 _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 6.8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Amyloid fibril of mouse PrP from RML--infected mouse brain' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7QIG _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat-2/2 _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7QIG _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7QIG _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 193 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 195 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 110 ? ? 62.07 60.69 2 1 PHE A 140 ? ? -143.68 34.22 3 1 MET A 153 ? ? 61.94 66.09 4 1 VAL A 165 ? ? -92.99 -64.68 5 1 GLU A 206 ? ? -91.37 -65.06 6 1 ARG A 207 ? ? -140.58 47.19 7 1 MET A 212 ? ? -101.55 -60.03 8 1 LYS B 100 ? ? -153.15 59.63 9 1 HIS B 110 ? ? 63.01 60.49 10 1 PHE B 140 ? ? -144.13 24.53 11 1 MET B 153 ? ? 65.98 62.86 12 1 VAL B 165 ? ? -92.81 -64.79 13 1 GLU B 195 ? ? -92.38 -60.12 14 1 GLU B 206 ? ? -99.09 -66.63 15 1 MET B 212 ? ? -101.90 -60.41 16 1 HIS C 110 ? ? 61.69 61.53 17 1 PHE C 140 ? ? -144.11 27.43 18 1 MET C 153 ? ? 64.29 64.13 19 1 VAL C 165 ? ? -92.29 -61.90 20 1 GLU C 195 ? ? -95.29 -62.15 21 1 GLU C 206 ? ? -91.31 -64.46 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 10090 _em_entity_assembly_naturalsource.organ Brain _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Mus musculus' _em_entity_assembly_naturalsource.strain CD-1 _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -0.64 _em_helical_entity.axial_rise_per_subunit 4.82 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 49 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_U12316055 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UU_00024/5 2 'Wellcome Trust' 'United Kingdom' 079605/Z/06/Z 3 'Wellcome Trust' 'United Kingdom' 101488/Z/13/Z 4 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #