HEADER DE NOVO PROTEIN 20-DEC-21 7QLF TITLE CONFORMATIONAL ENSEMBLE OF SOLNATIDE IN SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CACHECTIN,TNF-ALPHA,TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY COMPND 5 MEMBER 2,TNF-A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SOLNATIDE, A PEPTIDE DERIVED FROM HTNF WITH ENAC COMPND 8 ACTIVATING EFFECT. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS SYNTHETIC PEPTIDE, SOLNATIDE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR M.J.MACIAS,P.MARTIN-MALPARTIDA REVDAT 1 08-JUN-22 7QLF 0 JRNL AUTH P.MARTIN-MALPARTIDA,S.ARRASTIA-CASADO,J.FARRERA-SINFREU, JRNL AUTH 2 R.LUCAS,H.FISCHER,B.FISCHER,D.C.EATON,S.TZOTZOS,M.J.MACIAS JRNL TITL CONFORMATIONAL ENSEMBLE OF THE TNF-DERIVED PEPTIDE SOLNATIDE JRNL TITL 2 IN SOLUTION. JRNL REF COMPUT STRUCT BIOTECHNOL J V. 20 2082 2022 JRNL REFN ESSN 2001-0370 JRNL PMID 35601958 JRNL DOI 10.1016/J.CSBJ.2022.04.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119930. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM SOLNATIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 -64.32 -139.26 REMARK 500 1 TRP A 15 -61.06 -174.17 REMARK 500 2 ARG A 4 129.99 65.33 REMARK 500 2 GLU A 11 19.82 53.76 REMARK 500 2 TRP A 15 -61.49 -172.88 REMARK 500 4 ALA A 12 -122.38 56.18 REMARK 500 4 TRP A 15 -62.97 64.42 REMARK 500 5 ARG A 4 80.16 64.64 REMARK 500 5 TRP A 15 -98.84 -170.09 REMARK 500 6 ALA A 10 -35.52 -140.47 REMARK 500 6 TRP A 15 -80.04 -106.42 REMARK 500 7 ALA A 10 -141.42 48.78 REMARK 500 7 TRP A 15 19.08 -151.10 REMARK 500 8 ARG A 4 -30.44 69.14 REMARK 500 8 GLU A 11 27.10 49.34 REMARK 500 8 TYR A 16 -174.36 71.27 REMARK 500 9 ARG A 4 80.84 71.37 REMARK 500 9 ALA A 10 -137.39 45.57 REMARK 500 9 TYR A 16 -123.60 63.07 REMARK 500 10 TYR A 16 -178.70 69.77 REMARK 500 11 ARG A 4 -61.33 -125.07 REMARK 500 11 TRP A 15 -69.98 -174.96 REMARK 500 12 GLU A 5 66.54 60.07 REMARK 500 12 TRP A 15 -74.37 -100.91 REMARK 500 13 TYR A 16 -73.39 78.85 REMARK 500 14 THR A 6 79.15 -154.39 REMARK 500 14 GLU A 11 -54.02 70.86 REMARK 500 14 TRP A 15 -60.54 63.60 REMARK 500 15 ARG A 4 80.98 67.24 REMARK 500 15 GLU A 5 65.87 66.51 REMARK 500 15 TYR A 16 154.93 68.50 REMARK 500 16 PRO A 14 -70.54 -57.56 REMARK 500 17 ARG A 4 76.33 65.71 REMARK 500 17 TYR A 16 -129.07 66.45 REMARK 500 19 TYR A 16 -133.90 69.00 REMARK 500 20 PRO A 14 -79.91 -66.09 REMARK 500 20 TRP A 15 -176.24 -170.53 REMARK 500 21 ARG A 4 130.22 66.95 REMARK 500 21 TRP A 15 -110.75 -169.58 REMARK 500 22 ARG A 4 145.97 65.61 REMARK 500 22 TRP A 15 -81.86 -114.26 REMARK 500 23 TYR A 16 179.20 72.34 REMARK 500 24 ARG A 4 87.84 67.34 REMARK 500 24 ALA A 10 -139.87 47.72 REMARK 500 24 TYR A 16 -137.30 68.40 REMARK 500 25 ARG A 4 69.99 70.34 REMARK 500 25 GLU A 5 66.57 64.99 REMARK 500 25 TRP A 15 -82.60 -113.04 REMARK 500 26 ALA A 12 -130.79 57.07 REMARK 500 26 TRP A 15 -111.33 24.44 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34697 RELATED DB: BMRB REMARK 900 CONFORMATIONAL ENSEMBLE OF SOLNATIDE IN SOLUTION DBREF 7QLF A 3 16 UNP P01375 TNFA_HUMAN 178 191 SEQADV 7QLF CYS A 1 UNP P01375 ENGINEERED MUTATION SEQADV 7QLF GLY A 2 UNP P01375 ENGINEERED MUTATION SEQADV 7QLF CYS A 17 UNP P01375 ENGINEERED MUTATION SEQRES 1 A 17 CYS GLY GLN ARG GLU THR PRO GLU GLY ALA GLU ALA LYS SEQRES 2 A 17 PRO TRP TYR CYS HELIX 1 AA1 PRO A 7 GLU A 11 5 5 SSBOND 1 CYS A 1 CYS A 17 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1