HEADER TRANSFERASE 22-DEC-21 7QNR TITLE SMYD3 IN COMPLEX WITH FRAGMENT FL01791 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3,ZINC FINGER MYND COMPND 5 DOMAIN-CONTAINING PROTEIN 1; COMPND 6 EC: 2.1.1.354; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, EPIGENETIC, ONCOGEN, HISTONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.LUND,D.CEDERFELT,D.DOBRITZSCH REVDAT 3 24-APR-24 7QNR 1 JRNL REVDAT 2 07-FEB-24 7QNR 1 REMARK REVDAT 1 05-APR-23 7QNR 0 JRNL AUTH E.A.FITZGERALD,D.CEDERFELT,B.A.LUND,N.MYERS,H.ZHANG, JRNL AUTH 2 D.DOBRITZSCH,H.DANIELSON JRNL TITL IDENTIFICATION OF FRAGMENTS TARGETING SMYD3 USING HIGHLY JRNL TITL 2 SENSITIVE KINETIC AND MULTIPLEXED BIOSENSOR-BASED SCREENING JRNL REF RSC MED CHEM 2024 JRNL REFN ESSN 2632-8682 JRNL DOI 10.1039/D4MD00093E REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC4_4425 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 106759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5600 - 3.8600 0.89 6691 130 0.1678 0.1846 REMARK 3 2 3.8600 - 3.0600 0.89 6687 136 0.1603 0.1762 REMARK 3 3 3.0600 - 2.6800 0.92 6886 139 0.1740 0.1961 REMARK 3 4 2.6800 - 2.4300 0.92 6877 129 0.1791 0.2771 REMARK 3 5 2.4300 - 2.2600 0.94 7030 138 0.1835 0.2087 REMARK 3 6 2.2600 - 2.1200 0.95 7138 144 0.1915 0.2796 REMARK 3 7 2.1200 - 2.0200 0.96 7177 143 0.2150 0.2374 REMARK 3 8 2.0200 - 1.9300 0.96 7274 145 0.2353 0.3207 REMARK 3 9 1.9300 - 1.8600 0.95 7124 141 0.2604 0.3053 REMARK 3 10 1.8600 - 1.7900 0.95 7133 142 0.3041 0.3224 REMARK 3 11 1.7900 - 1.7400 0.96 7199 145 0.3351 0.3812 REMARK 3 12 1.7400 - 1.6900 0.96 7148 149 0.3374 0.3072 REMARK 3 13 1.6900 - 1.6400 0.95 7166 143 0.3557 0.3734 REMARK 3 14 1.6400 - 1.6000 0.93 6950 139 0.3598 0.3820 REMARK 3 15 1.6000 - 1.5700 0.82 6189 127 0.3952 0.3394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3553 REMARK 3 ANGLE : 0.828 4798 REMARK 3 CHIRALITY : 0.045 529 REMARK 3 PLANARITY : 0.020 624 REMARK 3 DIHEDRAL : 20.996 499 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): 3.4300 5.5819 21.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.2310 REMARK 3 T33: 0.2697 T12: 0.0015 REMARK 3 T13: -0.0354 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.3899 L22: 1.6142 REMARK 3 L33: 2.0399 L12: -0.3457 REMARK 3 L13: -0.2778 L23: -0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0889 S13: -0.0865 REMARK 3 S21: 0.0178 S22: 0.0922 S23: 0.2739 REMARK 3 S31: 0.0494 S32: -0.1018 S33: -0.0977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|41 - 72} REMARK 3 ORIGIN FOR THE GROUP (A): 15.6750 -2.0141 -6.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.3766 T22: 0.2497 REMARK 3 T33: 0.2450 T12: 0.0715 REMARK 3 T13: 0.0209 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 4.9605 L22: 3.6825 REMARK 3 L33: 5.2456 L12: 1.3752 REMARK 3 L13: 1.6794 L23: 0.2237 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.2755 S13: -0.2284 REMARK 3 S21: -0.4027 S22: 0.1029 S23: -0.3004 REMARK 3 S31: 0.1552 S32: 0.2419 S33: -0.1053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|73 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 11.3997 9.7515 -5.2022 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.2016 REMARK 3 T33: 0.1651 T12: -0.0090 REMARK 3 T13: -0.0212 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.7348 L22: 5.2179 REMARK 3 L33: 2.7346 L12: -0.2621 REMARK 3 L13: 1.1254 L23: 1.6502 REMARK 3 S TENSOR REMARK 3 S11: 0.1548 S12: 0.2069 S13: -0.1740 REMARK 3 S21: -0.4436 S22: -0.0412 S23: 0.0347 REMARK 3 S31: 0.0409 S32: 0.0661 S33: -0.0709 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|115 - 154} REMARK 3 ORIGIN FOR THE GROUP (A): 14.2392 19.1480 9.6262 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.0962 REMARK 3 T33: 0.1488 T12: 0.0375 REMARK 3 T13: -0.0091 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.2737 L22: 2.0485 REMARK 3 L33: 2.7391 L12: 0.9656 REMARK 3 L13: -0.2323 L23: -0.1511 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0331 S13: -0.0348 REMARK 3 S21: -0.0704 S22: 0.0443 S23: -0.0426 REMARK 3 S31: -0.0925 S32: 0.0916 S33: -0.0531 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|155 - 225} REMARK 3 ORIGIN FOR THE GROUP (A): 11.7026 9.0331 10.2362 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.2078 REMARK 3 T33: 0.1855 T12: 0.0101 REMARK 3 T13: -0.0409 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.5263 L22: 2.1760 REMARK 3 L33: 0.9817 L12: 0.0426 REMARK 3 L13: 0.0291 L23: -0.5522 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.0558 S13: -0.0464 REMARK 3 S21: -0.2028 S22: 0.0319 S23: 0.1000 REMARK 3 S31: 0.0556 S32: -0.0546 S33: -0.0857 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|226 - 279} REMARK 3 ORIGIN FOR THE GROUP (A): 21.5257 4.4913 27.6836 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.2160 REMARK 3 T33: 0.2143 T12: 0.0231 REMARK 3 T13: -0.0257 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.4686 L22: 1.2192 REMARK 3 L33: 0.4013 L12: -1.0181 REMARK 3 L13: 0.2015 L23: -0.1178 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: -0.0975 S13: 0.0821 REMARK 3 S21: 0.1255 S22: 0.0574 S23: -0.0287 REMARK 3 S31: 0.0405 S32: 0.0476 S33: 0.0010 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|280 - 299} REMARK 3 ORIGIN FOR THE GROUP (A): 36.5330 -1.4195 13.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.3015 T22: 0.2501 REMARK 3 T33: 0.3078 T12: 0.0150 REMARK 3 T13: -0.0251 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.1396 L22: 1.7862 REMARK 3 L33: 2.2510 L12: 0.8368 REMARK 3 L13: 1.8256 L23: 0.8307 REMARK 3 S TENSOR REMARK 3 S11: -0.3823 S12: 0.2084 S13: 0.5087 REMARK 3 S21: -0.1113 S22: -0.0881 S23: -0.1919 REMARK 3 S31: -0.8006 S32: 0.1978 S33: 0.6187 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|300 - 360} REMARK 3 ORIGIN FOR THE GROUP (A): 31.0228 -12.5908 15.5679 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.1721 REMARK 3 T33: 0.2044 T12: 0.0273 REMARK 3 T13: -0.0199 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.5207 L22: 1.8447 REMARK 3 L33: 2.0018 L12: -0.1527 REMARK 3 L13: -0.3505 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0255 S13: 0.0242 REMARK 3 S21: -0.1715 S22: -0.0120 S23: -0.1024 REMARK 3 S31: 0.0724 S32: 0.0278 S33: 0.0390 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|367 - 408} REMARK 3 ORIGIN FOR THE GROUP (A): 14.7838 -19.0628 17.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1700 REMARK 3 T33: 0.2178 T12: -0.0201 REMARK 3 T13: -0.0525 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.4774 L22: 6.0785 REMARK 3 L33: 1.8295 L12: -2.2274 REMARK 3 L13: -0.4254 L23: 1.1946 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: -0.0919 S13: -0.4217 REMARK 3 S21: 0.0240 S22: 0.0355 S23: 0.3940 REMARK 3 S31: 0.1242 S32: -0.0393 S33: -0.0066 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|409 - 428} REMARK 3 ORIGIN FOR THE GROUP (A): 9.0428 -26.0752 14.5395 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.2792 REMARK 3 T33: 0.3703 T12: -0.0329 REMARK 3 T13: -0.0463 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.6878 L22: 2.3673 REMARK 3 L33: 4.3980 L12: -2.2141 REMARK 3 L13: 0.1374 L23: -2.2754 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: -0.0721 S13: -0.6262 REMARK 3 S21: -0.2589 S22: 0.1066 S23: 0.3467 REMARK 3 S31: 0.1695 S32: -0.1652 S33: -0.0777 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292119966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25-8.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 233855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 44.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13380 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Z2R REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.25-8.75 0.1M MAGNESIUM REMARK 280 ACETATE 15-18 % PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.11800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.65100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.10900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.65100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.11800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.10900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H CYS A 65 O HOH A 604 1.48 REMARK 500 OE1 GLU A 138 O HOH A 601 1.85 REMARK 500 O HOH A 879 O HOH A 882 1.99 REMARK 500 O HOH A 647 O HOH A 927 2.00 REMARK 500 O HOH A 910 O HOH A 927 2.00 REMARK 500 O HOH A 605 O HOH A 669 2.02 REMARK 500 OD2 ASP A 398 O HOH A 602 2.05 REMARK 500 OD2 ASP A 413 O HOH A 603 2.06 REMARK 500 N CYS A 65 O HOH A 604 2.06 REMARK 500 OE1 GLN A 372 O HOH A 605 2.07 REMARK 500 O HOH A 825 O HOH A 899 2.07 REMARK 500 O HOH A 605 O HOH A 777 2.08 REMARK 500 O HOH A 867 O HOH A 913 2.11 REMARK 500 O HOH A 644 O HOH A 914 2.12 REMARK 500 OD1 ASP A 398 O HOH A 606 2.13 REMARK 500 O HOH A 799 O HOH A 825 2.17 REMARK 500 OD1 ASP A 332 O HOH A 605 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 21.77 -145.06 REMARK 500 ARG A 14 43.63 -144.32 REMARK 500 ARG A 14 42.26 -143.67 REMARK 500 PHE A 31 148.02 -174.57 REMARK 500 CYS A 93 45.29 -100.21 REMARK 500 TYR A 124 132.47 -173.52 REMARK 500 LYS A 271 -5.31 78.01 REMARK 500 SER A 317 -169.25 -110.93 REMARK 500 PHE A 362 67.57 -119.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 66 0.09 SIDE CHAIN REMARK 500 ARG A 406 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 106.6 REMARK 620 3 CYS A 71 SG 111.3 112.9 REMARK 620 4 CYS A 75 SG 108.2 117.2 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 112.1 REMARK 620 3 HIS A 83 NE2 113.6 104.3 REMARK 620 4 CYS A 87 SG 109.9 108.7 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 114.3 REMARK 620 3 CYS A 263 SG 105.5 107.8 REMARK 620 4 CYS A 266 SG 101.6 115.7 111.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QLB RELATED DB: PDB REMARK 900 7QLB CONTAINS THE SAME PROTEIN COMPLEXED WITH FRAGMENT FL06268 REMARK 900 RELATED ID: 7QNU RELATED DB: PDB REMARK 900 7QNU CONTAINS THE SAME PROTEIN COMPLEXED WITH FRAGMENT FL08619 DBREF 7QNR A 1 428 UNP Q9H7B4 SMYD3_HUMAN 1 428 SEQADV 7QNR GLY A -2 UNP Q9H7B4 EXPRESSION TAG SEQADV 7QNR SER A -1 UNP Q9H7B4 EXPRESSION TAG SEQADV 7QNR HIS A 0 UNP Q9H7B4 EXPRESSION TAG SEQADV 7QNR ASN A 13 UNP Q9H7B4 LYS 13 ENGINEERED MUTATION SEQADV 7QNR ARG A 140 UNP Q9H7B4 LYS 140 ENGINEERED MUTATION SEQRES 1 A 431 GLY SER HIS MET GLU PRO LEU LYS VAL GLU LYS PHE ALA SEQRES 2 A 431 THR ALA ASN ARG GLY ASN GLY LEU ARG ALA VAL THR PRO SEQRES 3 A 431 LEU ARG PRO GLY GLU LEU LEU PHE ARG SER ASP PRO LEU SEQRES 4 A 431 ALA TYR THR VAL CYS LYS GLY SER ARG GLY VAL VAL CYS SEQRES 5 A 431 ASP ARG CYS LEU LEU GLY LYS GLU LYS LEU MET ARG CYS SEQRES 6 A 431 SER GLN CYS ARG VAL ALA LYS TYR CYS SER ALA LYS CYS SEQRES 7 A 431 GLN LYS LYS ALA TRP PRO ASP HIS LYS ARG GLU CYS LYS SEQRES 8 A 431 CYS LEU LYS SER CYS LYS PRO ARG TYR PRO PRO ASP SER SEQRES 9 A 431 VAL ARG LEU LEU GLY ARG VAL VAL PHE LYS LEU MET ASP SEQRES 10 A 431 GLY ALA PRO SER GLU SER GLU LYS LEU TYR SER PHE TYR SEQRES 11 A 431 ASP LEU GLU SER ASN ILE ASN LYS LEU THR GLU ASP ARG SEQRES 12 A 431 LYS GLU GLY LEU ARG GLN LEU VAL MET THR PHE GLN HIS SEQRES 13 A 431 PHE MET ARG GLU GLU ILE GLN ASP ALA SER GLN LEU PRO SEQRES 14 A 431 PRO ALA PHE ASP LEU PHE GLU ALA PHE ALA LYS VAL ILE SEQRES 15 A 431 CYS ASN SER PHE THR ILE CYS ASN ALA GLU MET GLN GLU SEQRES 16 A 431 VAL GLY VAL GLY LEU TYR PRO SER ILE SER LEU LEU ASN SEQRES 17 A 431 HIS SER CYS ASP PRO ASN CYS SER ILE VAL PHE ASN GLY SEQRES 18 A 431 PRO HIS LEU LEU LEU ARG ALA VAL ARG ASP ILE GLU VAL SEQRES 19 A 431 GLY GLU GLU LEU THR ILE CYS TYR LEU ASP MET LEU MET SEQRES 20 A 431 THR SER GLU GLU ARG ARG LYS GLN LEU ARG ASP GLN TYR SEQRES 21 A 431 CYS PHE GLU CYS ASP CYS PHE ARG CYS GLN THR GLN ASP SEQRES 22 A 431 LYS ASP ALA ASP MET LEU THR GLY ASP GLU GLN VAL TRP SEQRES 23 A 431 LYS GLU VAL GLN GLU SER LEU LYS LYS ILE GLU GLU LEU SEQRES 24 A 431 LYS ALA HIS TRP LYS TRP GLU GLN VAL LEU ALA MET CYS SEQRES 25 A 431 GLN ALA ILE ILE SER SER ASN SER GLU ARG LEU PRO ASP SEQRES 26 A 431 ILE ASN ILE TYR GLN LEU LYS VAL LEU ASP CYS ALA MET SEQRES 27 A 431 ASP ALA CYS ILE ASN LEU GLY LEU LEU GLU GLU ALA LEU SEQRES 28 A 431 PHE TYR GLY THR ARG THR MET GLU PRO TYR ARG ILE PHE SEQRES 29 A 431 PHE PRO GLY SER HIS PRO VAL ARG GLY VAL GLN VAL MET SEQRES 30 A 431 LYS VAL GLY LYS LEU GLN LEU HIS GLN GLY MET PHE PRO SEQRES 31 A 431 GLN ALA MET LYS ASN LEU ARG LEU ALA PHE ASP ILE MET SEQRES 32 A 431 ARG VAL THR HIS GLY ARG GLU HIS SER LEU ILE GLU ASP SEQRES 33 A 431 LEU ILE LEU LEU LEU GLU GLU CYS ASP ALA ASN ILE ARG SEQRES 34 A 431 ALA SER HET SAM A 501 46 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET E45 A 505 18 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION HETNAM E45 3-PROPAN-2-YL-1,2,4-THIADIAZOL-5-AMINE FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 ZN 3(ZN 2+) FORMUL 6 E45 C5 H9 N3 S FORMUL 7 HOH *340(H2 O) HELIX 1 AA1 LYS A 42 ARG A 45 5 4 HELIX 2 AA2 SER A 72 CYS A 93 1 22 HELIX 3 AA3 PRO A 99 GLY A 115 1 17 HELIX 4 AA4 SER A 118 LYS A 122 5 5 HELIX 5 AA5 ASN A 132 LEU A 136 5 5 HELIX 6 AA6 THR A 137 MET A 155 1 19 HELIX 7 AA7 ASP A 161 LEU A 165 5 5 HELIX 8 AA8 ASP A 170 SER A 182 1 13 HELIX 9 AA9 SER A 200 LEU A 204 5 5 HELIX 10 AB1 THR A 245 GLN A 256 1 12 HELIX 11 AB2 CYS A 263 GLN A 269 1 7 HELIX 12 AB3 LYS A 271 LEU A 276 1 6 HELIX 13 AB4 ASP A 279 HIS A 299 1 21 HELIX 14 AB5 LYS A 301 SER A 314 1 14 HELIX 15 AB6 ASN A 324 GLY A 342 1 19 HELIX 16 AB7 LEU A 343 PHE A 362 1 20 HELIX 17 AB8 HIS A 366 GLN A 383 1 18 HELIX 18 AB9 MET A 385 HIS A 404 1 20 HELIX 19 AC1 HIS A 408 ALA A 427 1 20 SHEET 1 AA1 4 VAL A 6 ALA A 10 0 SHEET 2 AA1 4 ASN A 16 ALA A 20 -1 O GLY A 17 N PHE A 9 SHEET 3 AA1 4 GLU A 234 ILE A 237 -1 O LEU A 235 N LEU A 18 SHEET 4 AA1 4 ASN A 205 HIS A 206 1 N ASN A 205 O ILE A 237 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N LEU A 30 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N ASN A 217 O HIS A 220 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O LEU A 197 N ALA A 37 SHEET 3 AA3 3 PHE A 183 CYS A 186 -1 N ILE A 185 O VAL A 193 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 LINK SG CYS A 49 ZN ZN A 503 1555 1555 2.35 LINK SG CYS A 52 ZN ZN A 503 1555 1555 2.33 LINK SG CYS A 62 ZN ZN A 504 1555 1555 2.33 LINK SG CYS A 65 ZN ZN A 504 1555 1555 2.19 LINK SG CYS A 71 ZN ZN A 503 1555 1555 2.36 LINK SG CYS A 75 ZN ZN A 503 1555 1555 2.23 LINK NE2 HIS A 83 ZN ZN A 504 1555 1555 2.11 LINK SG CYS A 87 ZN ZN A 504 1555 1555 2.31 LINK SG CYS A 208 ZN ZN A 502 1555 1555 2.41 LINK SG CYS A 261 ZN ZN A 502 1555 1555 2.26 LINK SG CYS A 263 ZN ZN A 502 1555 1555 2.27 LINK SG CYS A 266 ZN ZN A 502 1555 1555 2.30 CRYST1 60.236 66.218 105.302 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016601 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009496 0.00000