HEADER VIRAL PROTEIN 11-JAN-22 7QRG TITLE STRUCTURE OF THE POST-FUSION COMPLEX BETWEEN PRECURSOR MEMBRANE TITLE 2 ECTODOMAIN (PRM) AND ENVELOPE ECTODOMAIN PROTEIN (E) FROM TICK-BORNE TITLE 3 ENCEPHALITIS VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE N-TERMINAL END OF E (MOLECULE 1) IS LINKED TO THE COMPND 6 C-TERMINAL OF ECTODOMAIN PRM (MOLECULE 2) BY A LINKER OF 14 RESIDUES COMPND 7 (GGGGENLYFQGGGG). THIS LINKER OF 14 RESIDUES IS ONLY DESCRIBED IN THE COMPND 8 SEQUENCE OF E (MOLECULE 1) AT ITS N-TERMINAL. FOR PURIFICATION, AT COMPND 9 THE C-TERMINAL OF E IT IS ADDED AN ENTEROKINASE SITE WITH A DSTREP- COMPND 10 TAG SEQUENCE : (GPFEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK). THE RESIDUE COMPND 11 TRP 101 FROM THE FUSION LOOP IS MUTATED TO ASP 101.; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: GENOME POLYPROTEIN; COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: THE C-TERMINAL END OF PRM (MOLECULE 3) IS LINKED TO COMPND 17 THE N-TERMINAL OF E (MOLECULE 1) BY A LINKER OF 14 RESIDUES COMPND 18 (GGGGENLYFQGGGG). THIS LINKER IS DESCRIBED IN THE SEQUENCE OF E COMPND 19 (MOLECULE 1). THE FURIN SITE IS DELETED FROM ONE AMINO ACID COMPND 20 (ARGININE). INTACT FURIN SITE : ...RTRRSVL... MUTATED FURIN SITE: COMPND 21 ...RTRSVL... SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SOURCE 3 SUBTYPE); SOURCE 4 ORGANISM_TAXID: 11088; SOURCE 5 STRAIN: NEUDOERFL; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL: SCHNEIDER 2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT389; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SOURCE 12 SUBTYPE); SOURCE 13 ORGANISM_TAXID: 11088; SOURCE 14 STRAIN: NEUDOERFL; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 17 EXPRESSION_SYSTEM_CELL: SCHNEIDER 2; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PT389 KEYWDS CLASS II FUSION ENVELOPE PROTEIN, PRECURSOR MEMBRANE PROTEIN, KEYWDS 2 CHAPERONE, POST-FUSION, FLAVIVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.C.VANEY,A.ROUVINSKI,F.A.REY REVDAT 3 31-JAN-24 7QRG 1 REMARK REVDAT 2 07-DEC-22 7QRG 1 JRNL REVDAT 1 25-MAY-22 7QRG 0 JRNL AUTH M.C.VANEY,M.DELLAROLE,S.DUQUERROY,I.MEDITS,G.TSOUCHNIKAS, JRNL AUTH 2 A.ROUVINSKI,P.ENGLAND,K.STIASNY,F.X.HEINZ,F.A.REY JRNL TITL EVOLUTION AND ACTIVATION MECHANISM OF THE FLAVIVIRUS CLASS JRNL TITL 2 II MEMBRANE-FUSION MACHINERY. JRNL REF NAT COMMUN V. 13 3718 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35764616 JRNL DOI 10.1038/S41467-022-31111-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.MEDITS,M.C.VANEY,A.ROUVINSKI,M.REY,J.CHAMOT-ROOKE,F.A.REY, REMARK 1 AUTH 2 F.X.HEINZ,K.STIASNY REMARK 1 TITL EXTENSIVE FLAVIVIRUS E TRIMER BREATHING ACCOMPANIES STEM REMARK 1 TITL 2 ZIPPERING OF THE POST-FUSION HAIRPIN. REMARK 1 REF EMBO REP V. 21 50069 2020 REMARK 1 REFN ESSN 1469-3178 REMARK 1 DOI 10.15252/EMBR.202050069 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 15902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2837 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2598 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2697 REMARK 3 BIN R VALUE (WORKING SET) : 0.2585 REMARK 3 BIN FREE R VALUE : 0.2821 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.71340 REMARK 3 B22 (A**2) : -13.71340 REMARK 3 B33 (A**2) : 27.42690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.500 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.116 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.351 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.105 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.356 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3732 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5061 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1276 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 90 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 543 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3732 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 490 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3756 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {D|1:80} REMARK 3 ORIGIN FOR THE GROUP (A): -23.6768 18.4511 -33.2327 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: -0.0880 REMARK 3 T33: -0.0673 T12: -0.1763 REMARK 3 T13: 0.1941 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.5212 L22: 5.0411 REMARK 3 L33: 1.7225 L12: 0.1419 REMARK 3 L13: -1.7584 L23: -1.6871 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.1055 S13: -0.0985 REMARK 3 S21: -0.0851 S22: 0.0315 S23: -0.1170 REMARK 3 S31: 0.1043 S32: -0.0030 S33: -0.0032 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|285:302} REMARK 3 ORIGIN FOR THE GROUP (A): -33.5549 25.4711 43.7362 REMARK 3 T TENSOR REMARK 3 T11: -0.0409 T22: 0.0552 REMARK 3 T33: -0.0578 T12: 0.0326 REMARK 3 T13: -0.0060 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 0.9544 L22: 0.2563 REMARK 3 L33: 2.2733 L12: -0.3732 REMARK 3 L13: 1.6202 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: -0.2372 S13: -0.0624 REMARK 3 S21: 0.1142 S22: -0.0739 S23: -0.2318 REMARK 3 S31: 0.0852 S32: 0.2800 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|257:284} REMARK 3 ORIGIN FOR THE GROUP (A): -34.2994 27.5727 7.6421 REMARK 3 T TENSOR REMARK 3 T11: -0.1090 T22: -0.1064 REMARK 3 T33: 0.0788 T12: -0.0123 REMARK 3 T13: -0.0209 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.1831 L22: -0.4729 REMARK 3 L33: 5.3815 L12: -0.7486 REMARK 3 L13: -1.0895 L23: -1.5967 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.0311 S13: 0.1063 REMARK 3 S21: 0.0258 S22: -0.0530 S23: -0.1488 REMARK 3 S31: 0.0061 S32: 0.2083 S33: 0.0680 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|63:121} REMARK 3 ORIGIN FOR THE GROUP (A): -29.3342 21.6731 -4.7580 REMARK 3 T TENSOR REMARK 3 T11: -0.0127 T22: 0.0256 REMARK 3 T33: -0.0006 T12: 0.0169 REMARK 3 T13: 0.0209 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0118 L22: -0.0036 REMARK 3 L33: 0.0088 L12: -0.0027 REMARK 3 L13: -0.0006 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0013 S13: 0.0002 REMARK 3 S21: 0.0011 S22: -0.0004 S23: 0.0010 REMARK 3 S31: -0.0007 S32: -0.0003 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|242:256} REMARK 3 ORIGIN FOR THE GROUP (A): -33.7197 28.4646 -23.4209 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0718 REMARK 3 T33: 0.0280 T12: -0.0410 REMARK 3 T13: 0.0319 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.3300 L22: 0.4891 REMARK 3 L33: 0.1851 L12: 0.5188 REMARK 3 L13: -0.4671 L23: -0.5965 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0045 S13: 0.0259 REMARK 3 S21: -0.0196 S22: 0.0091 S23: 0.0010 REMARK 3 S31: -0.0016 S32: -0.0136 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|303:403} REMARK 3 ORIGIN FOR THE GROUP (A): -33.8078 49.1077 33.9212 REMARK 3 T TENSOR REMARK 3 T11: -0.0616 T22: -0.0803 REMARK 3 T33: -0.0710 T12: -0.2144 REMARK 3 T13: -0.0372 T23: -0.1336 REMARK 3 L TENSOR REMARK 3 L11: 4.0072 L22: 2.9915 REMARK 3 L33: 2.8535 L12: 2.5190 REMARK 3 L13: -1.9238 L23: 1.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.1094 S13: 0.0573 REMARK 3 S21: 0.0248 S22: -0.0164 S23: 0.0780 REMARK 3 S31: -0.1684 S32: 0.1647 S33: -0.0373 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.23800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1URZ, 3C5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA MALONATE, 0.1M HEPES PH 6.7, REMARK 280 18.9% (W/V) PEG 3350, PH 4.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 97.93500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 339.25679 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -244.83750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 254.44259 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 THR A 147 REMARK 465 GLY A 148 REMARK 465 THR A 205 REMARK 465 VAL A 206 REMARK 465 GLU A 207 REMARK 465 HIS A 208 REMARK 465 GLU A 404 REMARK 465 ASP A 405 REMARK 465 ASP A 406 REMARK 465 ASP A 407 REMARK 465 ASP A 408 REMARK 465 LYS A 409 REMARK 465 ALA A 410 REMARK 465 GLY A 411 REMARK 465 TRP A 412 REMARK 465 SER A 413 REMARK 465 HIS A 414 REMARK 465 PRO A 415 REMARK 465 GLN A 416 REMARK 465 PHE A 417 REMARK 465 GLU A 418 REMARK 465 LYS A 419 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 GLY A 422 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 GLY A 425 REMARK 465 GLY A 426 REMARK 465 SER A 427 REMARK 465 GLY A 428 REMARK 465 GLY A 429 REMARK 465 GLY A 430 REMARK 465 SER A 431 REMARK 465 TRP A 432 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 PRO A 435 REMARK 465 GLN A 436 REMARK 465 PHE A 437 REMARK 465 GLU A 438 REMARK 465 LYS A 439 REMARK 465 LYS D 81 REMARK 465 GLN D 82 REMARK 465 GLU D 83 REMARK 465 GLY D 84 REMARK 465 SER D 85 REMARK 465 ARG D 86 REMARK 465 THR D 87 REMARK 465 ARG D 88 REMARK 465 SER D 89 REMARK 465 VAL D 90 REMARK 465 LEU D 91 REMARK 465 ILE D 92 REMARK 465 PRO D 93 REMARK 465 SER D 94 REMARK 465 HIS D 95 REMARK 465 ALA D 96 REMARK 465 GLN D 97 REMARK 465 GLY D 98 REMARK 465 GLU D 99 REMARK 465 LEU D 100 REMARK 465 THR D 101 REMARK 465 GLY D 102 REMARK 465 ARG D 103 REMARK 465 GLY D 104 REMARK 465 HIS D 105 REMARK 465 LYS D 106 REMARK 465 TRP D 107 REMARK 465 LEU D 108 REMARK 465 GLU D 109 REMARK 465 GLY D 110 REMARK 465 ASP D 111 REMARK 465 SER D 112 REMARK 465 LEU D 113 REMARK 465 ARG D 114 REMARK 465 THR D 115 REMARK 465 HIS D 116 REMARK 465 LEU D 117 REMARK 465 THR D 118 REMARK 465 ARG D 119 REMARK 465 VAL D 120 REMARK 465 GLU D 121 REMARK 465 GLY D 122 REMARK 465 TRP D 123 REMARK 465 VAL D 124 REMARK 465 TRP D 125 REMARK 465 LYS D 126 REMARK 465 ASN D 127 REMARK 465 LYS D 128 REMARK 465 GLY D 129 REMARK 465 GLY D 130 REMARK 465 GLY D 131 REMARK 465 GLY D 132 REMARK 465 GLU D 133 REMARK 465 ASN D 134 REMARK 465 LEU D 135 REMARK 465 TYR D 136 REMARK 465 PHE D 137 REMARK 465 GLN D 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 81.14 40.62 REMARK 500 THR A 56 -80.21 -83.91 REMARK 500 HIS A 104 78.62 55.60 REMARK 500 LYS A 311 47.03 -97.54 REMARK 500 HIS A 323 49.98 -150.24 REMARK 500 HIS A 347 102.05 -53.76 REMARK 500 ASN A 367 -78.00 -82.07 REMARK 500 VAL A 385 76.17 -117.68 REMARK 500 GLU D 27 -120.55 55.53 REMARK 500 ASP D 37 36.32 -87.62 REMARK 500 ASN D 68 -0.49 60.92 REMARK 500 ARG D 78 50.29 -114.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QRE RELATED DB: PDB REMARK 900 RELATED ID: 7QRF RELATED DB: PDB DBREF 7QRG A 1 400 UNP P14336 POLG_TBEVW 281 680 DBREF 7QRG D 1 128 UNP P14336 POLG_TBEVW 117 245 SEQADV 7QRG GLY A -3 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A -2 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A -1 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 0 UNP P14336 EXPRESSION TAG SEQADV 7QRG ASP A 101 UNP P14336 TRP 381 ENGINEERED MUTATION SEQADV 7QRG GLY A 401 UNP P14336 EXPRESSION TAG SEQADV 7QRG PRO A 402 UNP P14336 EXPRESSION TAG SEQADV 7QRG PHE A 403 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLU A 404 UNP P14336 EXPRESSION TAG SEQADV 7QRG ASP A 405 UNP P14336 EXPRESSION TAG SEQADV 7QRG ASP A 406 UNP P14336 EXPRESSION TAG SEQADV 7QRG ASP A 407 UNP P14336 EXPRESSION TAG SEQADV 7QRG ASP A 408 UNP P14336 EXPRESSION TAG SEQADV 7QRG LYS A 409 UNP P14336 EXPRESSION TAG SEQADV 7QRG ALA A 410 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 411 UNP P14336 EXPRESSION TAG SEQADV 7QRG TRP A 412 UNP P14336 EXPRESSION TAG SEQADV 7QRG SER A 413 UNP P14336 EXPRESSION TAG SEQADV 7QRG HIS A 414 UNP P14336 EXPRESSION TAG SEQADV 7QRG PRO A 415 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLN A 416 UNP P14336 EXPRESSION TAG SEQADV 7QRG PHE A 417 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLU A 418 UNP P14336 EXPRESSION TAG SEQADV 7QRG LYS A 419 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 420 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 421 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 422 UNP P14336 EXPRESSION TAG SEQADV 7QRG SER A 423 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 424 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 425 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 426 UNP P14336 EXPRESSION TAG SEQADV 7QRG SER A 427 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 428 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 429 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY A 430 UNP P14336 EXPRESSION TAG SEQADV 7QRG SER A 431 UNP P14336 EXPRESSION TAG SEQADV 7QRG TRP A 432 UNP P14336 EXPRESSION TAG SEQADV 7QRG SER A 433 UNP P14336 EXPRESSION TAG SEQADV 7QRG HIS A 434 UNP P14336 EXPRESSION TAG SEQADV 7QRG PRO A 435 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLN A 436 UNP P14336 EXPRESSION TAG SEQADV 7QRG PHE A 437 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLU A 438 UNP P14336 EXPRESSION TAG SEQADV 7QRG LYS A 439 UNP P14336 EXPRESSION TAG SEQADV 7QRG D UNP P14336 ARG 204 DELETION SEQADV 7QRG GLY D 129 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY D 130 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY D 131 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLY D 132 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLU D 133 UNP P14336 EXPRESSION TAG SEQADV 7QRG ASN D 134 UNP P14336 EXPRESSION TAG SEQADV 7QRG LEU D 135 UNP P14336 EXPRESSION TAG SEQADV 7QRG TYR D 136 UNP P14336 EXPRESSION TAG SEQADV 7QRG PHE D 137 UNP P14336 EXPRESSION TAG SEQADV 7QRG GLN D 138 UNP P14336 EXPRESSION TAG SEQRES 1 A 443 GLY GLY GLY GLY SER ARG CYS THR HIS LEU GLU ASN ARG SEQRES 2 A 443 ASP PHE VAL THR GLY THR GLN GLY THR THR ARG VAL THR SEQRES 3 A 443 LEU VAL LEU GLU LEU GLY GLY CYS VAL THR ILE THR ALA SEQRES 4 A 443 GLU GLY LYS PRO SER MET ASP VAL TRP LEU ASP ALA ILE SEQRES 5 A 443 TYR GLN GLU ASN PRO ALA LYS THR ARG GLU TYR CYS LEU SEQRES 6 A 443 HIS ALA LYS LEU SER ASP THR LYS VAL ALA ALA ARG CYS SEQRES 7 A 443 PRO THR MET GLY PRO ALA THR LEU ALA GLU GLU HIS GLN SEQRES 8 A 443 GLY GLY THR VAL CYS LYS ARG ASP GLN SER ASP ARG GLY SEQRES 9 A 443 ASP GLY ASN HIS CYS GLY LEU PHE GLY LYS GLY SER ILE SEQRES 10 A 443 VAL ALA CYS VAL LYS ALA ALA CYS GLU ALA LYS LYS LYS SEQRES 11 A 443 ALA THR GLY HIS VAL TYR ASP ALA ASN LYS ILE VAL TYR SEQRES 12 A 443 THR VAL LYS VAL GLU PRO HIS THR GLY ASP TYR VAL ALA SEQRES 13 A 443 ALA ASN GLU THR HIS SER GLY ARG LYS THR ALA SER PHE SEQRES 14 A 443 THR ILE SER SER GLU LYS THR ILE LEU THR MET GLY GLU SEQRES 15 A 443 TYR GLY ASP VAL SER LEU LEU CYS ARG VAL ALA SER GLY SEQRES 16 A 443 VAL ASP LEU ALA GLN THR VAL ILE LEU GLU LEU ASP LYS SEQRES 17 A 443 THR VAL GLU HIS LEU PRO THR ALA TRP GLN VAL HIS ARG SEQRES 18 A 443 ASP TRP PHE ASN ASP LEU ALA LEU PRO TRP LYS HIS GLU SEQRES 19 A 443 GLY ALA GLN ASN TRP ASN ASN ALA GLU ARG LEU VAL GLU SEQRES 20 A 443 PHE GLY ALA PRO HIS ALA VAL LYS MET ASP VAL TYR ASN SEQRES 21 A 443 LEU GLY ASP GLN THR GLY VAL LEU LEU LYS ALA LEU ALA SEQRES 22 A 443 GLY VAL PRO VAL ALA HIS ILE GLU GLY THR LYS TYR HIS SEQRES 23 A 443 LEU LYS SER GLY HIS VAL THR CYS GLU VAL GLY LEU GLU SEQRES 24 A 443 LYS LEU LYS MET LYS GLY LEU THR TYR THR MET CYS ASP SEQRES 25 A 443 LYS THR LYS PHE THR TRP LYS ARG ALA PRO THR ASP SER SEQRES 26 A 443 GLY HIS ASP THR VAL VAL MET GLU VAL THR PHE SER GLY SEQRES 27 A 443 THR LYS PRO CYS ARG ILE PRO VAL ARG ALA VAL ALA HIS SEQRES 28 A 443 GLY SER PRO ASP VAL ASN VAL ALA MET LEU ILE THR PRO SEQRES 29 A 443 ASN PRO THR ILE GLU ASN ASN GLY GLY GLY PHE ILE GLU SEQRES 30 A 443 MET GLN LEU PRO PRO GLY ASP ASN ILE ILE TYR VAL GLY SEQRES 31 A 443 GLU LEU SER HIS GLN TRP PHE GLN LYS GLY SER SER ILE SEQRES 32 A 443 GLY GLY PRO PHE GLU ASP ASP ASP ASP LYS ALA GLY TRP SEQRES 33 A 443 SER HIS PRO GLN PHE GLU LYS GLY GLY GLY SER GLY GLY SEQRES 34 A 443 GLY SER GLY GLY GLY SER TRP SER HIS PRO GLN PHE GLU SEQRES 35 A 443 LYS SEQRES 1 D 138 ALA THR VAL ARG LYS GLU ARG ASP GLY SER THR VAL ILE SEQRES 2 D 138 ARG ALA GLU GLY LYS ASP ALA ALA THR GLN VAL ARG VAL SEQRES 3 D 138 GLU ASN GLY THR CYS VAL ILE LEU ALA THR ASP MET GLY SEQRES 4 D 138 SER TRP CYS ASP ASP SER LEU SER TYR GLU CYS VAL THR SEQRES 5 D 138 ILE ASP GLN GLY GLU GLU PRO VAL ASP VAL ASP CYS PHE SEQRES 6 D 138 CYS ARG ASN VAL ASP GLY VAL TYR LEU GLU TYR GLY ARG SEQRES 7 D 138 CYS GLY LYS GLN GLU GLY SER ARG THR ARG SER VAL LEU SEQRES 8 D 138 ILE PRO SER HIS ALA GLN GLY GLU LEU THR GLY ARG GLY SEQRES 9 D 138 HIS LYS TRP LEU GLU GLY ASP SER LEU ARG THR HIS LEU SEQRES 10 D 138 THR ARG VAL GLU GLY TRP VAL TRP LYS ASN LYS GLY GLY SEQRES 11 D 138 GLY GLY GLU ASN LEU TYR PHE GLN HET GOL A 501 6 HET GOL A 502 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *14(H2 O) HELIX 1 AA1 GLU A 7 ARG A 9 5 3 HELIX 2 AA2 LEU A 82 GLN A 87 5 6 HELIX 3 AA3 GLY A 100 HIS A 104 5 5 HELIX 4 AA4 ASP A 133 ILE A 137 5 5 HELIX 5 AA5 GLY A 177 TYR A 179 5 3 HELIX 6 AA6 ASP A 193 ALA A 195 5 3 HELIX 7 AA7 ARG A 217 ASP A 222 1 6 HELIX 8 AA8 ASN A 237 ARG A 240 5 4 HELIX 9 AA9 GLN A 260 LEU A 268 1 9 HELIX 10 AB1 GLU D 16 ALA D 20 5 5 SHEET 1 AA1 5 THR A 4 HIS A 5 0 SHEET 2 AA1 5 CYS A 30 ALA A 35 1 O CYS A 30 N THR A 4 SHEET 3 AA1 5 MET A 41 GLU A 51 -1 O VAL A 43 N VAL A 31 SHEET 4 AA1 5 LYS A 280 HIS A 282 -1 O TYR A 281 N GLN A 50 SHEET 5 AA1 5 HIS A 275 GLU A 277 -1 N GLU A 277 O LYS A 280 SHEET 1 AA2 5 LYS A 161 PHE A 165 0 SHEET 2 AA2 5 VAL A 138 PRO A 145 -1 N VAL A 141 O ALA A 163 SHEET 3 AA2 5 MET A 41 GLU A 51 -1 N ASP A 42 O GLU A 144 SHEET 4 AA2 5 CYS A 30 ALA A 35 -1 N VAL A 31 O VAL A 43 SHEET 5 AA2 5 MET A 299 LYS A 300 -1 O LYS A 300 N THR A 34 SHEET 1 AA3 5 PHE A 11 THR A 13 0 SHEET 2 AA3 5 THR A 19 GLU A 26 -1 O ARG A 20 N VAL A 12 SHEET 3 AA3 5 GLY A 286 LEU A 294 -1 O VAL A 288 N LEU A 25 SHEET 4 AA3 5 ASP A 181 SER A 190 -1 N ARG A 187 O THR A 289 SHEET 5 AA3 5 LYS A 171 THR A 175 -1 N LEU A 174 O VAL A 182 SHEET 1 AA4 5 ALA A 212 HIS A 216 0 SHEET 2 AA4 5 THR A 197 LEU A 202 -1 N VAL A 198 O VAL A 215 SHEET 3 AA4 5 LYS A 126 VAL A 131 -1 N THR A 128 O GLU A 201 SHEET 4 AA4 5 ALA A 54 CYS A 60 -1 N TYR A 59 O ALA A 127 SHEET 5 AA4 5 TRP A 227 LYS A 228 -1 O LYS A 228 N GLU A 58 SHEET 1 AA5 7 THR A 90 ARG A 99 0 SHEET 2 AA5 7 GLY A 109 CYS A 121 -1 O GLY A 111 N SER A 97 SHEET 3 AA5 7 ALA A 63 ALA A 72 -1 N ALA A 71 O VAL A 114 SHEET 4 AA5 7 SER D 45 GLU D 49 1 O SER D 45 N THR A 68 SHEET 5 AA5 7 VAL D 72 GLY D 77 -1 O LEU D 74 N TYR D 48 SHEET 6 AA5 7 THR D 11 ARG D 14 1 N THR D 11 O TYR D 73 SHEET 7 AA5 7 THR D 2 LYS D 5 -1 N ARG D 4 O VAL D 12 SHEET 1 AA6 2 VAL A 242 PHE A 244 0 SHEET 2 AA6 2 VAL A 254 ASN A 256 -1 O TYR A 255 N GLU A 243 SHEET 1 AA7 4 PHE A 312 ASP A 320 0 SHEET 2 AA7 4 VAL A 326 PHE A 332 -1 O THR A 331 N THR A 313 SHEET 3 AA7 4 PHE A 371 GLN A 375 -1 O MET A 374 N VAL A 326 SHEET 4 AA7 4 MET A 356 LEU A 357 -1 N MET A 356 O GLN A 375 SHEET 1 AA8 2 CYS A 338 ARG A 339 0 SHEET 2 AA8 2 THR A 363 ILE A 364 -1 O ILE A 364 N CYS A 338 SHEET 1 AA9 3 VAL A 342 ALA A 346 0 SHEET 2 AA9 3 GLY A 379 VAL A 385 -1 O TYR A 384 N ARG A 343 SHEET 3 AA9 3 LEU A 388 GLN A 394 -1 O LEU A 388 N VAL A 385 SHEET 1 AB1 4 THR D 22 VAL D 26 0 SHEET 2 AB1 4 GLY D 29 ILE D 33 -1 O CYS D 31 N VAL D 24 SHEET 3 AB1 4 CYS D 64 ARG D 67 -1 O PHE D 65 N VAL D 32 SHEET 4 AB1 4 VAL D 51 THR D 52 1 N VAL D 51 O CYS D 66 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.03 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.04 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.04 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.03 SSBOND 5 CYS A 186 CYS A 290 1555 1555 2.03 SSBOND 6 CYS A 307 CYS A 338 1555 1555 2.03 SSBOND 7 CYS D 31 CYS D 66 1555 1555 2.03 SSBOND 8 CYS D 42 CYS D 79 1555 1555 2.03 SSBOND 9 CYS D 50 CYS D 64 1555 1555 2.03 CISPEP 1 LYS A 336 PRO A 337 0 1.51 CRYST1 97.935 97.935 115.164 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010211 0.005895 0.000000 0.00000 SCALE2 0.000000 0.011790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008683 0.00000