HEADER CELL CYCLE 11-JAN-22 7QRL TITLE LYTM DOMAIN OF DIPM, A COORDINATOR OF A COMPLEX NET OF AUTOLYSINS IN TITLE 2 CAULOBACTER CRESCENTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEPTIDASE,M23/M37 FAMILY; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DIPM; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: PEPTIDASE,M23/M37 FAMILY; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_TAXID: 155892; SOURCE 4 STRAIN: ATCC 19089 / CB15; SOURCE 5 GENE: DIPM, CC_1996; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PAI001; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTB146; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 12 ORGANISM_TAXID: 155892; SOURCE 13 STRAIN: ATCC 19089 / CB15; SOURCE 14 GENE: DIPM, CC_1996; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PAI001; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTB146 KEYWDS LYTM FACTOR AUTOLYSIN ACTIVATOR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.BATUECAS,V.MIGUEL-RUANO,J.A.HERMOSO REVDAT 2 07-FEB-24 7QRL 1 REMARK REVDAT 1 21-JUN-23 7QRL 0 JRNL AUTH M.T.BATUECAS,V.MIGUEL-RUANO,J.A.HERMOSO JRNL TITL LYTM DOMAIN OF DIPM, A COORDINATOR OF A COMPLEX NET OF JRNL TITL 2 AUTOLYSINS IN CAULOBACTER CRESCENTUS JRNL REF NAT COMMUN 2023 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2576 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : 1.54000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4530 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4378 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6163 ; 1.569 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10082 ; 1.304 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 7.306 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;34.650 ;22.264 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;15.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;23.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5278 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1012 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 467 609 B 467 609 4265 0.070 0.050 REMARK 3 2 A 467 608 C 467 608 3987 0.110 0.050 REMARK 3 3 A 467 608 D 467 608 3970 0.120 0.050 REMARK 3 4 B 467 608 C 467 608 3989 0.120 0.050 REMARK 3 5 B 467 608 D 467 608 3982 0.120 0.050 REMARK 3 6 C 461 609 D 461 609 4326 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 467 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0729 3.5399 21.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: 0.0630 REMARK 3 T33: 0.0731 T12: 0.0016 REMARK 3 T13: -0.0124 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.6663 L22: 0.9660 REMARK 3 L33: 0.3770 L12: -0.1537 REMARK 3 L13: -0.2962 L23: 0.0111 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.0872 S13: -0.0161 REMARK 3 S21: 0.0372 S22: -0.0280 S23: 0.0195 REMARK 3 S31: 0.0461 S32: 0.0166 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 467 B 609 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2025 21.6385 4.7969 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0247 REMARK 3 T33: 0.0926 T12: 0.0107 REMARK 3 T13: -0.0063 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.5202 L22: 0.5141 REMARK 3 L33: 0.7578 L12: 0.3972 REMARK 3 L13: 0.1600 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0221 S13: 0.0833 REMARK 3 S21: -0.0395 S22: -0.0093 S23: 0.0289 REMARK 3 S31: -0.0234 S32: -0.0059 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 461 C 609 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3907 24.7807 -3.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.0093 T22: 0.0459 REMARK 3 T33: 0.0997 T12: -0.0089 REMARK 3 T13: -0.0152 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4914 L22: 0.4349 REMARK 3 L33: 0.6802 L12: -0.1320 REMARK 3 L13: -0.0961 L23: -0.3871 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0419 S13: 0.0663 REMARK 3 S21: -0.0037 S22: 0.0073 S23: 0.0359 REMARK 3 S31: -0.0293 S32: 0.0287 S33: 0.0094 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 461 D 609 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8092 -4.3106 24.6416 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0604 REMARK 3 T33: 0.0976 T12: 0.0089 REMARK 3 T13: 0.0023 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3106 L22: 1.0196 REMARK 3 L33: 0.7006 L12: -0.0177 REMARK 3 L13: 0.0180 L23: -0.3018 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.0276 S13: -0.0037 REMARK 3 S21: 0.0078 S22: 0.0317 S23: 0.0607 REMARK 3 S31: 0.0196 S32: 0.0038 S33: -0.0088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7QRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979185 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 49.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5KVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MAGNESIUM CHLORIDE, 0.1M HEPES REMARK 280 PH 7.5 AND 22% POLYACRYLIC ACID SODIUM SALT 5100 ., VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.91950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.21550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.91950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.21550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 786 O HOH D 813 1.99 REMARK 500 O HOH A 773 O HOH A 788 2.02 REMARK 500 OG1 THR D 465 O HOH D 701 2.12 REMARK 500 O HOH A 711 O HOH D 814 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 795 O HOH D 747 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 473 CD GLU B 473 OE2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 533 -10.08 84.32 REMARK 500 ARG A 561 -6.50 82.80 REMARK 500 ARG A 561 -6.50 82.68 REMARK 500 LEU B 486 143.93 -170.82 REMARK 500 THR B 533 -6.96 83.20 REMARK 500 ARG B 561 -4.29 81.48 REMARK 500 ARG C 561 -7.80 83.04 REMARK 500 ARG C 561 -11.41 85.20 REMARK 500 ARG D 561 -5.49 81.09 REMARK 500 ARG D 561 -5.49 81.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 806 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH C 829 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH D 838 DISTANCE = 6.68 ANGSTROMS DBREF 7QRL A 467 609 UNP Q9A6T7 Q9A6T7_CAUVC 467 609 DBREF 7QRL B 467 609 UNP Q9A6T7 Q9A6T7_CAUVC 467 609 DBREF 7QRL C 461 609 UNP Q9A6T7 Q9A6T7_CAUVC 461 609 DBREF 7QRL D 461 609 UNP Q9A6T7 Q9A6T7_CAUVC 461 609 SEQRES 1 A 143 ALA ALA PRO THR GLU ALA GLU ILE ILE ALA SER GLY LYS SEQRES 2 A 143 GLY LYS PHE ALA TRP PRO LEU ARG GLY ASP ILE ILE SER SEQRES 3 A 143 SER PHE GLY VAL LYS GLY THR GLY GLN ARG ASN ASP GLY SEQRES 4 A 143 LEU ASN ILE ARG ALA PRO GLN GLY THR PRO VAL LEU SER SEQRES 5 A 143 SER ALA ASP GLY GLU ILE ALA TYR ALA GLY ASN GLN VAL SEQRES 6 A 143 PRO THR PHE GLY ASN LEU VAL LEU VAL LYS HIS ALA ASP SEQRES 7 A 143 GLY TRP VAL THR ALA TYR ALA HIS LEU SER SER THR ASN SEQRES 8 A 143 VAL LYS MET ARG GLN GLN VAL LYS GLN GLY GLU GLN LEU SEQRES 9 A 143 GLY THR VAL GLY ALA THR GLY GLY VAL ASN GLU PRO GLN SEQRES 10 A 143 LEU HIS PHE GLU MET ARG TYR ALA PRO THR VAL LYS ASP SEQRES 11 A 143 LYS ALA LYS PRO VAL ASP PRO ALA LEU VAL LEU PRO ARG SEQRES 1 B 143 ALA ALA PRO THR GLU ALA GLU ILE ILE ALA SER GLY LYS SEQRES 2 B 143 GLY LYS PHE ALA TRP PRO LEU ARG GLY ASP ILE ILE SER SEQRES 3 B 143 SER PHE GLY VAL LYS GLY THR GLY GLN ARG ASN ASP GLY SEQRES 4 B 143 LEU ASN ILE ARG ALA PRO GLN GLY THR PRO VAL LEU SER SEQRES 5 B 143 SER ALA ASP GLY GLU ILE ALA TYR ALA GLY ASN GLN VAL SEQRES 6 B 143 PRO THR PHE GLY ASN LEU VAL LEU VAL LYS HIS ALA ASP SEQRES 7 B 143 GLY TRP VAL THR ALA TYR ALA HIS LEU SER SER THR ASN SEQRES 8 B 143 VAL LYS MET ARG GLN GLN VAL LYS GLN GLY GLU GLN LEU SEQRES 9 B 143 GLY THR VAL GLY ALA THR GLY GLY VAL ASN GLU PRO GLN SEQRES 10 B 143 LEU HIS PHE GLU MET ARG TYR ALA PRO THR VAL LYS ASP SEQRES 11 B 143 LYS ALA LYS PRO VAL ASP PRO ALA LEU VAL LEU PRO ARG SEQRES 1 C 149 THR ILE ILE GLU THR ALA ALA ALA PRO THR GLU ALA GLU SEQRES 2 C 149 ILE ILE ALA SER GLY LYS GLY LYS PHE ALA TRP PRO LEU SEQRES 3 C 149 ARG GLY ASP ILE ILE SER SER PHE GLY VAL LYS GLY THR SEQRES 4 C 149 GLY GLN ARG ASN ASP GLY LEU ASN ILE ARG ALA PRO GLN SEQRES 5 C 149 GLY THR PRO VAL LEU SER SER ALA ASP GLY GLU ILE ALA SEQRES 6 C 149 TYR ALA GLY ASN GLN VAL PRO THR PHE GLY ASN LEU VAL SEQRES 7 C 149 LEU VAL LYS HIS ALA ASP GLY TRP VAL THR ALA TYR ALA SEQRES 8 C 149 HIS LEU SER SER THR ASN VAL LYS MET ARG GLN GLN VAL SEQRES 9 C 149 LYS GLN GLY GLU GLN LEU GLY THR VAL GLY ALA THR GLY SEQRES 10 C 149 GLY VAL ASN GLU PRO GLN LEU HIS PHE GLU MET ARG TYR SEQRES 11 C 149 ALA PRO THR VAL LYS ASP LYS ALA LYS PRO VAL ASP PRO SEQRES 12 C 149 ALA LEU VAL LEU PRO ARG SEQRES 1 D 149 THR ILE ILE GLU THR ALA ALA ALA PRO THR GLU ALA GLU SEQRES 2 D 149 ILE ILE ALA SER GLY LYS GLY LYS PHE ALA TRP PRO LEU SEQRES 3 D 149 ARG GLY ASP ILE ILE SER SER PHE GLY VAL LYS GLY THR SEQRES 4 D 149 GLY GLN ARG ASN ASP GLY LEU ASN ILE ARG ALA PRO GLN SEQRES 5 D 149 GLY THR PRO VAL LEU SER SER ALA ASP GLY GLU ILE ALA SEQRES 6 D 149 TYR ALA GLY ASN GLN VAL PRO THR PHE GLY ASN LEU VAL SEQRES 7 D 149 LEU VAL LYS HIS ALA ASP GLY TRP VAL THR ALA TYR ALA SEQRES 8 D 149 HIS LEU SER SER THR ASN VAL LYS MET ARG GLN GLN VAL SEQRES 9 D 149 LYS GLN GLY GLU GLN LEU GLY THR VAL GLY ALA THR GLY SEQRES 10 D 149 GLY VAL ASN GLU PRO GLN LEU HIS PHE GLU MET ARG TYR SEQRES 11 D 149 ALA PRO THR VAL LYS ASP LYS ALA LYS PRO VAL ASP PRO SEQRES 12 D 149 ALA LEU VAL LEU PRO ARG FORMUL 5 HOH *471(H2 O) HELIX 1 AA1 THR A 470 LYS A 479 1 10 HELIX 2 AA2 ASP A 602 VAL A 606 5 5 HELIX 3 AA3 THR B 470 LYS B 479 1 10 HELIX 4 AA4 ASP B 602 VAL B 606 5 5 HELIX 5 AA5 THR C 470 LYS C 479 1 10 HELIX 6 AA6 VAL C 531 GLY C 535 5 5 HELIX 7 AA7 ASP C 602 VAL C 606 5 5 HELIX 8 AA8 THR D 470 LYS D 479 1 10 HELIX 9 AA9 VAL D 531 GLY D 535 5 5 HELIX 10 AB1 ASP D 602 LEU D 607 1 6 SHEET 1 AA1 7 ILE A 490 SER A 492 0 SHEET 2 AA1 7 LEU A 506 ARG A 509 -1 O ASN A 507 N SER A 492 SHEET 3 AA1 7 GLN A 583 TYR A 590 -1 O PHE A 586 N LEU A 506 SHEET 4 AA1 7 TRP A 546 LEU A 553 -1 N VAL A 547 O ARG A 589 SHEET 5 AA1 7 ASN A 536 LYS A 541 -1 N VAL A 540 O THR A 548 SHEET 6 AA1 7 GLY A 522 GLY A 528 -1 N GLU A 523 O LYS A 541 SHEET 7 AA1 7 GLN A 563 VAL A 564 -1 O VAL A 564 N GLY A 522 SHEET 1 AA2 4 ILE A 490 SER A 492 0 SHEET 2 AA2 4 LEU A 506 ARG A 509 -1 O ASN A 507 N SER A 492 SHEET 3 AA2 4 GLN A 583 TYR A 590 -1 O PHE A 586 N LEU A 506 SHEET 4 AA2 4 LYS A 599 VAL A 601 -1 O LYS A 599 N TYR A 590 SHEET 1 AA3 2 GLY A 495 VAL A 496 0 SHEET 2 AA3 2 ARG A 502 ASN A 503 -1 O ASN A 503 N GLY A 495 SHEET 1 AA4 3 PRO A 515 LEU A 517 0 SHEET 2 AA4 3 GLN A 569 THR A 572 -1 O LEU A 570 N VAL A 516 SHEET 3 AA4 3 SER A 555 THR A 556 -1 N SER A 555 O THR A 572 SHEET 1 AA5 7 ILE B 490 SER B 492 0 SHEET 2 AA5 7 LEU B 506 ARG B 509 -1 O ASN B 507 N ILE B 491 SHEET 3 AA5 7 GLN B 583 TYR B 590 -1 O PHE B 586 N LEU B 506 SHEET 4 AA5 7 TRP B 546 LEU B 553 -1 N VAL B 547 O ARG B 589 SHEET 5 AA5 7 ASN B 536 LYS B 541 -1 N VAL B 540 O THR B 548 SHEET 6 AA5 7 GLY B 522 GLY B 528 -1 N GLU B 523 O LYS B 541 SHEET 7 AA5 7 GLN B 563 VAL B 564 -1 O VAL B 564 N GLY B 522 SHEET 1 AA6 4 ILE B 490 SER B 492 0 SHEET 2 AA6 4 LEU B 506 ARG B 509 -1 O ASN B 507 N ILE B 491 SHEET 3 AA6 4 GLN B 583 TYR B 590 -1 O PHE B 586 N LEU B 506 SHEET 4 AA6 4 LYS B 599 VAL B 601 -1 O LYS B 599 N TYR B 590 SHEET 1 AA7 2 GLY B 495 VAL B 496 0 SHEET 2 AA7 2 ARG B 502 ASN B 503 -1 O ASN B 503 N GLY B 495 SHEET 1 AA8 3 PRO B 515 LEU B 517 0 SHEET 2 AA8 3 GLN B 569 THR B 572 -1 O LEU B 570 N VAL B 516 SHEET 3 AA8 3 SER B 555 THR B 556 -1 N SER B 555 O THR B 572 SHEET 1 AA9 7 ILE C 490 SER C 492 0 SHEET 2 AA9 7 LEU C 506 ARG C 509 -1 O ASN C 507 N SER C 492 SHEET 3 AA9 7 GLN C 583 TYR C 590 -1 O LEU C 584 N ILE C 508 SHEET 4 AA9 7 TRP C 546 LEU C 553 -1 N VAL C 547 O ARG C 589 SHEET 5 AA9 7 ASN C 536 LYS C 541 -1 N VAL C 540 O THR C 548 SHEET 6 AA9 7 GLY C 522 GLY C 528 -1 N GLU C 523 O LYS C 541 SHEET 7 AA9 7 GLN C 563 VAL C 564 -1 O VAL C 564 N GLY C 522 SHEET 1 AB1 4 ILE C 490 SER C 492 0 SHEET 2 AB1 4 LEU C 506 ARG C 509 -1 O ASN C 507 N SER C 492 SHEET 3 AB1 4 GLN C 583 TYR C 590 -1 O LEU C 584 N ILE C 508 SHEET 4 AB1 4 LYS C 599 VAL C 601 -1 O VAL C 601 N MET C 588 SHEET 1 AB2 2 GLY C 495 GLY C 498 0 SHEET 2 AB2 2 GLN C 501 ASN C 503 -1 O ASN C 503 N GLY C 495 SHEET 1 AB3 3 PRO C 515 LEU C 517 0 SHEET 2 AB3 3 GLN C 569 THR C 572 -1 O LEU C 570 N VAL C 516 SHEET 3 AB3 3 SER C 555 THR C 556 -1 N SER C 555 O THR C 572 SHEET 1 AB4 7 ILE D 490 SER D 492 0 SHEET 2 AB4 7 LEU D 506 ARG D 509 -1 O ASN D 507 N SER D 492 SHEET 3 AB4 7 GLN D 583 TYR D 590 -1 O LEU D 584 N ILE D 508 SHEET 4 AB4 7 TRP D 546 LEU D 553 -1 N VAL D 547 O ARG D 589 SHEET 5 AB4 7 ASN D 536 LYS D 541 -1 N VAL D 540 O THR D 548 SHEET 6 AB4 7 GLY D 522 GLY D 528 -1 N GLY D 528 O LEU D 537 SHEET 7 AB4 7 GLN D 563 VAL D 564 -1 O VAL D 564 N GLY D 522 SHEET 1 AB5 4 ILE D 490 SER D 492 0 SHEET 2 AB5 4 LEU D 506 ARG D 509 -1 O ASN D 507 N SER D 492 SHEET 3 AB5 4 GLN D 583 TYR D 590 -1 O LEU D 584 N ILE D 508 SHEET 4 AB5 4 LYS D 599 VAL D 601 -1 O VAL D 601 N MET D 588 SHEET 1 AB6 2 GLY D 495 GLY D 498 0 SHEET 2 AB6 2 GLN D 501 ASN D 503 -1 O ASN D 503 N GLY D 495 SHEET 1 AB7 3 PRO D 515 LEU D 517 0 SHEET 2 AB7 3 GLN D 569 THR D 572 -1 O LEU D 570 N VAL D 516 SHEET 3 AB7 3 SER D 555 THR D 556 -1 N SER D 555 O THR D 572 CRYST1 65.869 105.839 108.431 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009222 0.00000