HEADER LIGASE 12-JAN-22 7QRX TITLE CRYSTAL STRUCTURE OF NHL DOMAIN OF TRIM71 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM71; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN LIN-41 HOMOLOG,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 5 TRIM71,TRIPARTITE MOTIF-CONTAINING PROTEIN 71; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM71, LIN41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMO-LIC KEYWDS E3, TRIM, TRIM71, NHL DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 31-JAN-24 7QRX 1 REMARK REVDAT 2 14-DEC-22 7QRX 1 JRNL REVDAT 1 04-MAY-22 7QRX 0 JRNL AUTH A.CHAIKUAD,R.ZHUBI,C.TREDUP,S.KNAPP JRNL TITL COMPARATIVE STRUCTURAL ANALYSES OF THE NHL DOMAINS FROM THE JRNL TITL 2 HUMAN E3 LIGASE TRIM-NHL FAMILY. JRNL REF IUCRJ V. 9 720 2022 JRNL REFN ESSN 2052-2525 JRNL PMID 36381143 JRNL DOI 10.1107/S2052252522008582 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.90000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.468 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.029 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4510 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4204 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6046 ; 1.139 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9622 ; 1.091 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 9.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;26.530 ;21.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 704 ;14.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.042 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5273 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1179 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 590 868 B 590 868 9255 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 590 A 738 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0279 4.6299 20.3727 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0590 REMARK 3 T33: 0.0103 T12: -0.0011 REMARK 3 T13: -0.0004 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.1660 L22: 3.7717 REMARK 3 L33: 3.1075 L12: -0.1883 REMARK 3 L13: 0.7131 L23: 0.1454 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: -0.0426 S13: -0.0350 REMARK 3 S21: 0.1747 S22: -0.0265 S23: 0.1316 REMARK 3 S31: 0.1888 S32: -0.0767 S33: -0.0773 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 739 A 831 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0579 -6.1063 3.7818 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1345 REMARK 3 T33: 0.0905 T12: 0.0059 REMARK 3 T13: -0.0405 T23: -0.0844 REMARK 3 L TENSOR REMARK 3 L11: 4.5036 L22: 5.4832 REMARK 3 L33: 4.7404 L12: 0.5310 REMARK 3 L13: -0.6215 L23: -0.1490 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.2649 S13: -0.4188 REMARK 3 S21: -0.5933 S22: 0.0439 S23: 0.2307 REMARK 3 S31: 0.3606 S32: -0.0245 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 832 A 868 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6000 11.5207 3.5526 REMARK 3 T TENSOR REMARK 3 T11: 0.2338 T22: 0.1319 REMARK 3 T33: 0.0528 T12: 0.0726 REMARK 3 T13: 0.0297 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 2.8130 L22: 5.5793 REMARK 3 L33: 4.7515 L12: 3.0430 REMARK 3 L13: -0.0019 L23: 0.2402 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.3324 S13: 0.3056 REMARK 3 S21: -0.7207 S22: 0.0824 S23: 0.2227 REMARK 3 S31: -0.1332 S32: -0.0306 S33: -0.0862 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 590 B 700 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9920 9.0890 50.5668 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0535 REMARK 3 T33: 0.0244 T12: -0.0158 REMARK 3 T13: -0.0025 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.7902 L22: 3.7877 REMARK 3 L33: 2.7376 L12: 0.3730 REMARK 3 L13: 0.8762 L23: 0.2797 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: 0.0327 S13: 0.1488 REMARK 3 S21: 0.0928 S22: -0.0516 S23: -0.2136 REMARK 3 S31: -0.1177 S32: 0.0264 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 701 B 775 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9363 -8.7197 57.1536 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.1474 REMARK 3 T33: 0.2846 T12: -0.0270 REMARK 3 T13: -0.0458 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.8764 L22: 5.5103 REMARK 3 L33: 5.8492 L12: -0.4181 REMARK 3 L13: 0.1412 L23: -0.4057 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: -0.1018 S13: -0.4902 REMARK 3 S21: 0.0913 S22: -0.0283 S23: -0.0014 REMARK 3 S31: 0.5399 S32: -0.1345 S33: -0.0471 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 776 B 868 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5344 2.9853 69.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.2899 REMARK 3 T33: 0.1226 T12: 0.0032 REMARK 3 T13: -0.0877 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.7000 L22: 5.2951 REMARK 3 L33: 3.3229 L12: 0.2700 REMARK 3 L13: 0.0167 L23: -1.6845 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.5990 S13: -0.1699 REMARK 3 S21: 1.0211 S22: 0.0907 S23: -0.4583 REMARK 3 S31: -0.0446 S32: 0.0278 S33: -0.0990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7QRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 10% ETHYLENE GLYCOL, 0.1M REMARK 280 BIS-TRIS-PROPANE PH 8.5, 0.2M POTASSIUM THIOCYANATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.33700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 787 CD GLU A 787 OE1 -0.074 REMARK 500 GLY B 839 C GLY B 839 O 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 610 -77.21 -126.93 REMARK 500 HIS A 640 -63.47 -103.40 REMARK 500 TYR A 702 68.82 72.62 REMARK 500 ARG A 751 -79.92 -127.67 REMARK 500 GLN A 798 -105.31 -128.21 REMARK 500 LEU A 828 -74.52 -97.79 REMARK 500 SER A 845 -93.19 -119.37 REMARK 500 TRP B 610 -80.73 -125.22 REMARK 500 HIS B 640 -65.20 -103.95 REMARK 500 TYR B 702 71.88 71.75 REMARK 500 ARG B 751 -81.01 -128.44 REMARK 500 GLN B 798 -107.07 -127.48 REMARK 500 LEU B 828 -74.37 -96.93 REMARK 500 SER B 845 -92.77 -117.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QRX A 590 868 UNP Q2Q1W2 LIN41_HUMAN 590 868 DBREF 7QRX B 590 868 UNP Q2Q1W2 LIN41_HUMAN 590 868 SEQRES 1 A 279 GLY LEU PRO GLY LEU SER PHE GLY SER GLU GLY ASP SER SEQRES 2 A 279 ASP GLY LYS LEU CYS ARG PRO TRP GLY VAL SER VAL ASP SEQRES 3 A 279 LYS GLU GLY TYR ILE ILE VAL ALA ASP ARG SER ASN ASN SEQRES 4 A 279 ARG ILE GLN VAL PHE LYS PRO CYS GLY ALA PHE HIS HIS SEQRES 5 A 279 LYS PHE GLY THR LEU GLY SER ARG PRO GLY GLN PHE ASP SEQRES 6 A 279 ARG PRO ALA GLY VAL ALA CYS ASP ALA SER ARG ARG ILE SEQRES 7 A 279 VAL VAL ALA ASP LYS ASP ASN HIS ARG ILE GLN ILE PHE SEQRES 8 A 279 THR PHE GLU GLY GLN PHE LEU LEU LYS PHE GLY GLU LYS SEQRES 9 A 279 GLY THR LYS ASN GLY GLN PHE ASN TYR PRO TRP ASP VAL SEQRES 10 A 279 ALA VAL ASN SER GLU GLY LYS ILE LEU VAL SER ASP THR SEQRES 11 A 279 ARG ASN HIS ARG ILE GLN LEU PHE GLY PRO ASP GLY VAL SEQRES 12 A 279 PHE LEU ASN LYS TYR GLY PHE GLU GLY ALA LEU TRP LYS SEQRES 13 A 279 HIS PHE ASP SER PRO ARG GLY VAL ALA PHE ASN HIS GLU SEQRES 14 A 279 GLY HIS LEU VAL VAL THR ASP PHE ASN ASN HIS ARG LEU SEQRES 15 A 279 LEU VAL ILE HIS PRO ASP CYS GLN SER ALA ARG PHE LEU SEQRES 16 A 279 GLY SER GLU GLY THR GLY ASN GLY GLN PHE LEU ARG PRO SEQRES 17 A 279 GLN GLY VAL ALA VAL ASP GLN GLU GLY ARG ILE ILE VAL SEQRES 18 A 279 ALA ASP SER ARG ASN HIS ARG VAL GLN MET PHE GLU SER SEQRES 19 A 279 ASN GLY SER PHE LEU CYS LYS PHE GLY ALA GLN GLY SER SEQRES 20 A 279 GLY PHE GLY GLN MET ASP ARG PRO SER GLY ILE ALA ILE SEQRES 21 A 279 THR PRO ASP GLY MET ILE VAL VAL VAL ASP PHE GLY ASN SEQRES 22 A 279 ASN ARG ILE LEU VAL PHE SEQRES 1 B 279 GLY LEU PRO GLY LEU SER PHE GLY SER GLU GLY ASP SER SEQRES 2 B 279 ASP GLY LYS LEU CYS ARG PRO TRP GLY VAL SER VAL ASP SEQRES 3 B 279 LYS GLU GLY TYR ILE ILE VAL ALA ASP ARG SER ASN ASN SEQRES 4 B 279 ARG ILE GLN VAL PHE LYS PRO CYS GLY ALA PHE HIS HIS SEQRES 5 B 279 LYS PHE GLY THR LEU GLY SER ARG PRO GLY GLN PHE ASP SEQRES 6 B 279 ARG PRO ALA GLY VAL ALA CYS ASP ALA SER ARG ARG ILE SEQRES 7 B 279 VAL VAL ALA ASP LYS ASP ASN HIS ARG ILE GLN ILE PHE SEQRES 8 B 279 THR PHE GLU GLY GLN PHE LEU LEU LYS PHE GLY GLU LYS SEQRES 9 B 279 GLY THR LYS ASN GLY GLN PHE ASN TYR PRO TRP ASP VAL SEQRES 10 B 279 ALA VAL ASN SER GLU GLY LYS ILE LEU VAL SER ASP THR SEQRES 11 B 279 ARG ASN HIS ARG ILE GLN LEU PHE GLY PRO ASP GLY VAL SEQRES 12 B 279 PHE LEU ASN LYS TYR GLY PHE GLU GLY ALA LEU TRP LYS SEQRES 13 B 279 HIS PHE ASP SER PRO ARG GLY VAL ALA PHE ASN HIS GLU SEQRES 14 B 279 GLY HIS LEU VAL VAL THR ASP PHE ASN ASN HIS ARG LEU SEQRES 15 B 279 LEU VAL ILE HIS PRO ASP CYS GLN SER ALA ARG PHE LEU SEQRES 16 B 279 GLY SER GLU GLY THR GLY ASN GLY GLN PHE LEU ARG PRO SEQRES 17 B 279 GLN GLY VAL ALA VAL ASP GLN GLU GLY ARG ILE ILE VAL SEQRES 18 B 279 ALA ASP SER ARG ASN HIS ARG VAL GLN MET PHE GLU SER SEQRES 19 B 279 ASN GLY SER PHE LEU CYS LYS PHE GLY ALA GLN GLY SER SEQRES 20 B 279 GLY PHE GLY GLN MET ASP ARG PRO SER GLY ILE ALA ILE SEQRES 21 B 279 THR PRO ASP GLY MET ILE VAL VAL VAL ASP PHE GLY ASN SEQRES 22 B 279 ASN ARG ILE LEU VAL PHE HET EDO A 901 4 HET EDO A 902 4 HET EDO A 903 4 HET EDO A 904 4 HET EDO A 905 4 HET EDO A 906 4 HET EDO A 907 4 HET EDO A 908 4 HET EDO A 909 4 HET EDO A 910 4 HET EDO B 901 4 HET EDO B 902 4 HET EDO B 903 4 HET EDO B 904 4 HET EDO B 905 4 HET EDO B 906 4 HET EDO B 907 4 HET EDO B 908 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 18(C2 H6 O2) FORMUL 21 HOH *146(H2 O) HELIX 1 AA1 ARG A 625 ASN A 628 5 4 HELIX 2 AA2 LYS A 672 HIS A 675 5 4 HELIX 3 AA3 GLU A 740 ASP A 748 5 9 HELIX 4 AA4 ARG A 814 HIS A 816 5 3 HELIX 5 AA5 GLY A 861 ASN A 863 5 3 HELIX 6 AA6 ARG B 625 ASN B 628 5 4 HELIX 7 AA7 LYS B 672 HIS B 675 5 4 HELIX 8 AA8 GLU B 740 ASP B 748 5 9 HELIX 9 AA9 ARG B 814 HIS B 816 5 3 HELIX 10 AB1 PHE B 860 ASN B 863 5 4 SHEET 1 AA1 4 LEU A 594 PHE A 596 0 SHEET 2 AA1 4 ARG A 864 PHE A 868 -1 O ILE A 865 N PHE A 596 SHEET 3 AA1 4 ILE A 855 ASP A 859 -1 N VAL A 857 O LEU A 866 SHEET 4 AA1 4 PRO A 844 ILE A 849 -1 N ALA A 848 O VAL A 856 SHEET 1 AA2 4 VAL A 612 VAL A 614 0 SHEET 2 AA2 4 ILE A 620 ASP A 624 -1 O ILE A 621 N SER A 613 SHEET 3 AA2 4 ARG A 629 PHE A 633 -1 O GLN A 631 N VAL A 622 SHEET 4 AA2 4 PHE A 639 PHE A 643 -1 O HIS A 641 N VAL A 632 SHEET 1 AA3 4 ALA A 660 CYS A 661 0 SHEET 2 AA3 4 ILE A 667 ASP A 671 -1 O VAL A 668 N ALA A 660 SHEET 3 AA3 4 ARG A 676 PHE A 680 -1 O GLN A 678 N VAL A 669 SHEET 4 AA3 4 PHE A 686 PHE A 690 -1 O LEU A 687 N ILE A 679 SHEET 1 AA4 4 PRO A 703 VAL A 708 0 SHEET 2 AA4 4 ILE A 714 ASP A 718 -1 O LEU A 715 N ALA A 707 SHEET 3 AA4 4 ARG A 723 PHE A 727 -1 O PHE A 727 N ILE A 714 SHEET 4 AA4 4 PHE A 733 GLY A 738 -1 O LEU A 734 N LEU A 726 SHEET 1 AA5 4 PRO A 750 PHE A 755 0 SHEET 2 AA5 4 LEU A 761 ASP A 765 -1 O VAL A 762 N ALA A 754 SHEET 3 AA5 4 ARG A 770 ILE A 774 -1 O LEU A 772 N VAL A 763 SHEET 4 AA5 4 ALA A 781 LEU A 784 -1 O LEU A 784 N LEU A 771 SHEET 1 AA6 4 PRO A 797 VAL A 802 0 SHEET 2 AA6 4 ILE A 808 ASP A 812 -1 O ILE A 809 N ALA A 801 SHEET 3 AA6 4 ARG A 817 PHE A 821 -1 O ARG A 817 N ASP A 812 SHEET 4 AA6 4 PHE A 827 PHE A 831 -1 O PHE A 831 N VAL A 818 SHEET 1 AA7 4 LEU B 594 PHE B 596 0 SHEET 2 AA7 4 ARG B 864 PHE B 868 -1 O ILE B 865 N PHE B 596 SHEET 3 AA7 4 ILE B 855 ASP B 859 -1 N VAL B 857 O LEU B 866 SHEET 4 AA7 4 ILE B 847 ILE B 849 -1 N ALA B 848 O VAL B 856 SHEET 1 AA8 4 VAL B 612 VAL B 614 0 SHEET 2 AA8 4 ILE B 620 ASP B 624 -1 O ILE B 621 N SER B 613 SHEET 3 AA8 4 ARG B 629 PHE B 633 -1 O GLN B 631 N VAL B 622 SHEET 4 AA8 4 PHE B 639 PHE B 643 -1 O HIS B 641 N VAL B 632 SHEET 1 AA9 4 ALA B 660 CYS B 661 0 SHEET 2 AA9 4 ILE B 667 ASP B 671 -1 O VAL B 668 N ALA B 660 SHEET 3 AA9 4 ARG B 676 PHE B 680 -1 O GLN B 678 N VAL B 669 SHEET 4 AA9 4 PHE B 686 PHE B 690 -1 O LEU B 687 N ILE B 679 SHEET 1 AB1 4 PRO B 703 VAL B 708 0 SHEET 2 AB1 4 ILE B 714 ASP B 718 -1 O LEU B 715 N ALA B 707 SHEET 3 AB1 4 ARG B 723 PHE B 727 -1 O PHE B 727 N ILE B 714 SHEET 4 AB1 4 PHE B 733 GLY B 738 -1 O LEU B 734 N LEU B 726 SHEET 1 AB2 4 PRO B 750 PHE B 755 0 SHEET 2 AB2 4 LEU B 761 ASP B 765 -1 O VAL B 762 N ALA B 754 SHEET 3 AB2 4 ARG B 770 ILE B 774 -1 O LEU B 772 N VAL B 763 SHEET 4 AB2 4 ALA B 781 LEU B 784 -1 O LEU B 784 N LEU B 771 SHEET 1 AB3 4 PRO B 797 VAL B 802 0 SHEET 2 AB3 4 ILE B 808 ASP B 812 -1 O ILE B 809 N ALA B 801 SHEET 3 AB3 4 ARG B 817 PHE B 821 -1 O GLN B 819 N VAL B 810 SHEET 4 AB3 4 PHE B 827 PHE B 831 -1 O PHE B 831 N VAL B 818 CRYST1 34.750 78.674 92.852 90.00 100.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028777 0.000000 0.005115 0.00000 SCALE2 0.000000 0.012711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010939 0.00000