HEADER LIGASE 12-JAN-22 7QRZ TITLE CRYSTAL STRUCTURE OF B30.2 PRYSPRY DOMAIN OF MID2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE E3 UBIQUITIN-PROTEIN LIGASE MID2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MIDIN-2,MIDLINE DEFECT 2,MIDLINE-2,RING FINGER PROTEIN 60, COMPND 5 RING-TYPE E3 UBIQUITIN TRANSFERASE MID2,TRIPARTITE MOTIF-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MID2, FXY2, RNF60, TRIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGTVL2 KEYWDS E3, TRIM, MID2, TRIM1, B30.2 DOMAIN, SPRY DOMAIN, PRYSPRY DOMAIN, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,R.ZHUBI,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 31-JAN-24 7QRZ 1 REMARK REVDAT 1 04-MAY-22 7QRZ 0 JRNL AUTH A.CHAIKUAD,R.ZHUBI,S.KNAPP, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF B30.2 PRYSPRY DOMAIN OF MID2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1456 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1369 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1961 ; 1.654 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3165 ; 1.380 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 7.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;29.372 ;22.985 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 239 ;12.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;17.837 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 181 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1600 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 531 A 584 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9191 11.6616 22.6938 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.1018 REMARK 3 T33: 0.0150 T12: -0.0030 REMARK 3 T13: 0.0057 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.3117 L22: 0.3113 REMARK 3 L33: 2.9025 L12: -0.6170 REMARK 3 L13: 0.5359 L23: -0.2071 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.0940 S13: -0.1186 REMARK 3 S21: -0.0176 S22: 0.0018 S23: 0.0499 REMARK 3 S31: 0.1593 S32: 0.2723 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 585 A 695 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6296 15.9506 35.0552 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: 0.0290 REMARK 3 T33: 0.0045 T12: 0.0021 REMARK 3 T13: -0.0024 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.8891 L22: 0.2759 REMARK 3 L33: 0.8697 L12: 0.2743 REMARK 3 L13: 0.1774 L23: 0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0494 S13: 0.0109 REMARK 3 S21: 0.0073 S22: -0.0120 S23: -0.0165 REMARK 3 S31: -0.0052 S32: -0.0064 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 696 A 710 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5543 19.7549 24.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0667 REMARK 3 T33: 0.0897 T12: 0.0190 REMARK 3 T13: -0.0068 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 1.1898 L22: 1.1830 REMARK 3 L33: 3.3965 L12: 0.7533 REMARK 3 L13: -0.5516 L23: 1.1397 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.1983 S13: 0.2946 REMARK 3 S21: -0.1220 S22: 0.0583 S23: 0.2296 REMARK 3 S31: -0.2356 S32: -0.2284 S33: -0.0470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7QRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 48.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% HIGH MOLECULAR WEIGHT PEG SMEARS, REMARK 280 0.1M ADA PH 6.5, 0.2M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.96050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.54200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.96050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.54200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.96050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.54200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.96050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.54200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C1 EDO A 807 LIES ON A SPECIAL POSITION. REMARK 375 C2 EDO A 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 530 REMARK 465 GLU A 560 REMARK 465 SER A 561 REMARK 465 SER A 562 REMARK 465 LEU A 563 REMARK 465 LYS A 564 REMARK 465 LYS A 565 REMARK 465 SER A 566 REMARK 465 HIS A 567 REMARK 465 THR A 568 REMARK 465 ASP A 711 REMARK 465 TYR A 712 REMARK 465 PRO A 713 REMARK 465 GLU A 714 REMARK 465 ARG A 715 REMARK 465 GLN A 716 REMARK 465 GLU A 717 REMARK 465 CYS A 718 REMARK 465 ASN A 719 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 575 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 705 O HOH A 901 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 642 CD GLU A 642 OE2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 583 30.99 -99.50 REMARK 500 TRP A 617 50.85 -115.02 REMARK 500 ASN A 631 -109.20 54.47 REMARK 500 LYS A 696 -138.31 59.99 REMARK 500 ALA A 706 116.05 -33.83 REMARK 500 PRO A 707 171.76 -59.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 598 -13.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QRZ A 532 719 UNP Q9UJV3 TRIM1_HUMAN 532 719 SEQADV 7QRZ SER A 530 UNP Q9UJV3 EXPRESSION TAG SEQADV 7QRZ MET A 531 UNP Q9UJV3 EXPRESSION TAG SEQRES 1 A 190 SER MET ASN SER GLN PRO PHE LYS LEU ASP PRO LYS MET SEQRES 2 A 190 THR HIS LYS LYS LEU LYS ILE SER ASN ASP GLY LEU GLN SEQRES 3 A 190 MET GLU LYS ASP GLU SER SER LEU LYS LYS SER HIS THR SEQRES 4 A 190 PRO GLU ARG PHE SER GLY THR GLY CYS TYR GLY ALA ALA SEQRES 5 A 190 GLY ASN ILE PHE ILE ASP SER GLY CYS HIS TYR TRP GLU SEQRES 6 A 190 VAL VAL MET GLY SER SER THR TRP TYR ALA ILE GLY ILE SEQRES 7 A 190 ALA TYR LYS SER ALA PRO LYS ASN GLU TRP ILE GLY LYS SEQRES 8 A 190 ASN ALA SER SER TRP VAL PHE SER ARG CYS ASN SER ASN SEQRES 9 A 190 PHE VAL VAL ARG HIS ASN ASN LYS GLU MET LEU VAL ASP SEQRES 10 A 190 VAL PRO PRO HIS LEU LYS ARG LEU GLY VAL LEU LEU ASP SEQRES 11 A 190 TYR ASP ASN ASN MET LEU SER PHE TYR ASP PRO ALA ASN SEQRES 12 A 190 SER LEU HIS LEU HIS THR PHE ASP VAL THR PHE ILE LEU SEQRES 13 A 190 PRO VAL CYS PRO THR PHE THR ILE TRP ASN LYS SER LEU SEQRES 14 A 190 MET ILE LEU SER GLY LEU PRO ALA PRO ASP PHE ILE ASP SEQRES 15 A 190 TYR PRO GLU ARG GLN GLU CYS ASN HET SO4 A 801 5 HET EDO A 802 8 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 O4 S 2- FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *134(H2 O) HELIX 1 AA1 ASP A 539 THR A 543 5 5 HELIX 2 AA2 PRO A 670 SER A 673 5 4 SHEET 1 AA1 7 LEU A 547 ILE A 549 0 SHEET 2 AA1 7 GLN A 555 LYS A 558 -1 O GLU A 557 N LYS A 548 SHEET 3 AA1 7 SER A 697 LEU A 701 -1 O LEU A 698 N MET A 556 SHEET 4 AA1 7 CYS A 590 VAL A 596 -1 N GLU A 594 O LEU A 701 SHEET 5 AA1 7 ARG A 653 ASP A 659 -1 O VAL A 656 N TRP A 593 SHEET 6 AA1 7 MET A 664 ASP A 669 -1 O SER A 666 N LEU A 657 SHEET 7 AA1 7 LEU A 674 ASP A 680 -1 O PHE A 679 N LEU A 665 SHEET 1 AA2 6 TYR A 578 ALA A 581 0 SHEET 2 AA2 6 CYS A 688 ILE A 693 -1 O PHE A 691 N ALA A 580 SHEET 3 AA2 6 TRP A 602 ALA A 608 -1 N ALA A 604 O THR A 692 SHEET 4 AA2 6 SER A 624 CYS A 630 -1 O PHE A 627 N ILE A 605 SHEET 5 AA2 6 ASN A 633 HIS A 638 -1 O VAL A 635 N SER A 628 SHEET 6 AA2 6 LYS A 641 LEU A 644 -1 O MET A 643 N VAL A 636 CRYST1 63.921 75.084 78.190 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012789 0.00000