HEADER HYDROLASE 14-JAN-22 7QST TITLE CRYSTAL STRUCTURE OF HOMING ENDONUCLEASE-ASSOCIATED PHOVMA INTEIN TITLE 2 (C1A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: HA331_07965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTEIN, PROTEIN SPLICING, ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.BEYER,H.IWAI REVDAT 4 31-JAN-24 7QST 1 REMARK REVDAT 3 13-APR-22 7QST 1 JRNL REVDAT 2 06-APR-22 7QST 1 TITLE REMARK REVDAT 1 30-MAR-22 7QST 0 JRNL AUTH H.M.BEYER,H.IWAI JRNL TITL STRUCTURAL BASIS FOR THE PROPAGATION OF HOMING JRNL TITL 2 ENDONUCLEASE-ASSOCIATED INTEINS. JRNL REF FRONT MOL BIOSCI V. 9 55511 2022 JRNL REFN ESSN 2296-889X JRNL PMID 35372505 JRNL DOI 10.3389/FMOLB.2022.855511 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5100 - 4.5200 1.00 2603 138 0.1580 0.1999 REMARK 3 2 4.5200 - 3.5900 1.00 2559 134 0.1662 0.2339 REMARK 3 3 3.5900 - 3.1300 1.00 2572 136 0.2041 0.2703 REMARK 3 4 3.1300 - 2.8500 1.00 2547 134 0.2312 0.3120 REMARK 3 5 2.8500 - 2.6400 1.00 2543 134 0.2484 0.3203 REMARK 3 6 2.6400 - 2.4900 1.00 2544 134 0.2725 0.3649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.384 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2850 REMARK 3 ANGLE : 0.955 3850 REMARK 3 CHIRALITY : 0.056 452 REMARK 3 PLANARITY : 0.006 483 REMARK 3 DIHEDRAL : 11.346 386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2160 -12.6374 21.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.4461 T22: 0.3201 REMARK 3 T33: 0.3843 T12: -0.0312 REMARK 3 T13: -0.0680 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 4.9023 L22: 2.3677 REMARK 3 L33: 3.2393 L12: -0.3514 REMARK 3 L13: 0.9209 L23: -0.3907 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.3163 S13: 0.1419 REMARK 3 S21: 0.0075 S22: -0.0497 S23: -0.0985 REMARK 3 S31: -0.1734 S32: -0.0307 S33: 0.0631 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6888 -2.0450 -2.0214 REMARK 3 T TENSOR REMARK 3 T11: 0.6602 T22: 0.6514 REMARK 3 T33: 0.5839 T12: -0.0747 REMARK 3 T13: -0.0332 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 0.6720 L22: 2.7560 REMARK 3 L33: 5.8723 L12: 0.3232 REMARK 3 L13: -0.0216 L23: -3.5435 REMARK 3 S TENSOR REMARK 3 S11: -0.2818 S12: 0.3492 S13: 0.0590 REMARK 3 S21: -0.6659 S22: 0.1424 S23: -0.0775 REMARK 3 S31: 0.3214 S32: -0.4580 S33: 0.0392 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4252 -4.2293 26.0237 REMARK 3 T TENSOR REMARK 3 T11: 0.7018 T22: 0.6059 REMARK 3 T33: 0.4585 T12: 0.0485 REMARK 3 T13: -0.1051 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.3805 L22: 3.9854 REMARK 3 L33: 1.7558 L12: -1.4388 REMARK 3 L13: -0.6063 L23: 0.3088 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.0899 S13: 0.5350 REMARK 3 S21: 0.3650 S22: 0.1071 S23: 0.0954 REMARK 3 S31: -0.2464 S32: -0.4334 S33: -0.0763 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 43.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.71400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: 2CW7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 8.0, 5 MM CADMIUM REMARK 280 CHLORIDE, 5 MM MAGNESIUM CHLORIDE, 5 MM NICKEL (II) CHLORIDE, 10% REMARK 280 (W/V) POLYETHYLENE GLYCOL (PEG) 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.54000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.54000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 ASN A 135 REMARK 465 VAL A 136 REMARK 465 GLY A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 ARG A 295 REMARK 465 ARG A 296 REMARK 465 GLU A 328 REMARK 465 GLU A 329 REMARK 465 VAL A 330 REMARK 465 ALA A 331 REMARK 465 GLU A 332 REMARK 465 ASN A 333 REMARK 465 HIS A 334 REMARK 465 LEU A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 98 CD CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 GLU A 143 CD OE1 OE2 REMARK 470 GLU A 168 CD OE1 OE2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 ARG A 193 CD NE CZ NH1 NH2 REMARK 470 LYS A 201 CE REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 ARG A 215 CD NE CZ NH1 NH2 REMARK 470 ARG A 216 CD NE CZ NH1 NH2 REMARK 470 LYS A 224 CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 LYS A 311 CE NZ REMARK 470 LYS A 323 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 147 O HOH A 501 2.10 REMARK 500 NE2 HIS A 363 O HOH A 502 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 78 OD1 ASP A 199 2455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 48 -163.48 -128.69 REMARK 500 ASP A 99 55.67 -115.83 REMARK 500 GLU A 138 -113.58 37.71 REMARK 500 ASN A 159 35.17 -153.49 REMARK 500 SER A 164 -120.47 45.87 REMARK 500 CYS A 171 172.85 178.28 REMARK 500 ASP A 172 -137.58 -92.87 REMARK 500 ASP A 173 75.15 42.29 REMARK 500 LEU A 177 -49.12 131.92 REMARK 500 GLN A 196 90.49 -68.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD2 REMARK 620 2 GLU A 38 OE1 117.9 REMARK 620 3 GLU A 178 OE1 13.3 107.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 405 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 105 OE1 REMARK 620 2 GLU A 105 OE2 61.2 REMARK 620 3 HIS A 363 NE2 157.6 140.6 REMARK 620 4 HIS A 375 NE2 90.4 100.0 81.4 REMARK 620 5 HOH A 502 O 127.4 69.8 71.8 79.9 REMARK 620 6 HOH A 508 O 68.9 68.4 118.8 159.2 110.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 404 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 124 OD2 54.3 REMARK 620 3 HIS A 337 NE2 75.1 110.6 REMARK 620 N 1 2 DBREF1 7QST A -2 376 UNP A0A832T7H1_PYRHR DBREF2 7QST A A0A832T7H1 238 616 SEQADV 7QST ALA A 1 UNP A0A832T7H CYS 241 ENGINEERED MUTATION SEQRES 1 A 379 SER GLY LYS ALA VAL ASP GLY ASP THR LEU VAL LEU THR SEQRES 2 A 379 LYS GLU PHE GLY LEU ILE LYS ILE LYS GLU LEU TYR GLU SEQRES 3 A 379 LYS LEU ASP GLY LYS GLY ARG LYS ILE VAL GLU GLY ASN SEQRES 4 A 379 GLU GLU TRP THR GLU LEU GLU LYS PRO ILE THR VAL TYR SEQRES 5 A 379 GLY TYR LYS ASP GLY LYS ILE VAL GLU ILE LYS ALA THR SEQRES 6 A 379 HIS VAL TYR LYS GLY VAL SER SER GLY MET VAL GLU ILE SEQRES 7 A 379 ARG THR ARG THR GLY ARG LYS ILE LYS VAL THR PRO ILE SEQRES 8 A 379 HIS ARG LEU PHE THR GLY ARG VAL THR LYS ASP GLY LEU SEQRES 9 A 379 ILE LEU LYS GLU VAL MET ALA MET HIS VAL LYS PRO GLY SEQRES 10 A 379 ASP ARG ILE ALA VAL VAL LYS LYS ILE ASP GLY GLY GLU SEQRES 11 A 379 TYR ILE LYS LEU ASP SER SER ASN VAL GLY GLU ILE LYS SEQRES 12 A 379 VAL PRO GLU ILE LEU ASN GLU GLU LEU ALA GLU PHE LEU SEQRES 13 A 379 GLY TYR LEU MET ALA ASN GLY THR LEU LYS SER GLY ILE SEQRES 14 A 379 ILE GLU ILE TYR CYS ASP ASP GLU SER LEU LEU GLU ARG SEQRES 15 A 379 VAL ASN SER LEU SER LEU LYS LEU PHE GLY VAL GLY GLY SEQRES 16 A 379 ARG ILE VAL GLN LYS VAL ASP GLY LYS ALA LEU VAL ILE SEQRES 17 A 379 GLN SER LYS PRO LEU VAL ASP VAL LEU ARG ARG LEU GLY SEQRES 18 A 379 VAL PRO GLU ASP LYS LYS VAL GLU ASN TRP LYS VAL PRO SEQRES 19 A 379 ARG GLU LEU LEU LEU SER PRO SER ASN VAL VAL ARG ALA SEQRES 20 A 379 PHE VAL ASN ALA TYR ILE LYS GLY LYS GLU GLU VAL GLU SEQRES 21 A 379 ILE THR LEU ALA SER GLU GLU GLY ALA TYR GLU LEU SER SEQRES 22 A 379 TYR LEU PHE ALA LYS LEU GLY ILE TYR VAL THR ILE SER SEQRES 23 A 379 LYS SER GLY GLU TYR TYR LYS VAL ARG VAL SER ARG ARG SEQRES 24 A 379 GLY ASN LEU ASP THR ILE PRO VAL GLU VAL ASN GLY MET SEQRES 25 A 379 PRO LYS VAL LEU PRO TYR GLU ASP PHE ARG LYS PHE ALA SEQRES 26 A 379 LYS SER ILE GLY LEU GLU GLU VAL ALA GLU ASN HIS LEU SEQRES 27 A 379 GLN HIS ILE ILE PHE ASP GLU VAL ILE ASP VAL ARG TYR SEQRES 28 A 379 ILE PRO GLU PRO GLN GLU VAL TYR ASP VAL THR THR GLU SEQRES 29 A 379 THR HIS ASN PHE VAL GLY GLY ASN MET PRO THR LEU LEU SEQRES 30 A 379 HIS ASN HET CD A 401 1 HET CD A 402 1 HET NI A 403 1 HET NI A 404 1 HET NI A 405 1 HETNAM CD CADMIUM ION HETNAM NI NICKEL (II) ION FORMUL 2 CD 2(CD 2+) FORMUL 4 NI 3(NI 2+) FORMUL 7 HOH *15(H2 O) HELIX 1 AA1 ILE A 18 ASP A 26 1 9 HELIX 2 AA2 MET A 109 VAL A 111 5 3 HELIX 3 AA3 ASN A 146 ASN A 159 1 14 HELIX 4 AA4 GLU A 174 GLY A 189 1 16 HELIX 5 AA5 SER A 207 LEU A 217 1 11 HELIX 6 AA6 PRO A 231 LEU A 236 1 6 HELIX 7 AA7 PRO A 238 ILE A 250 1 13 HELIX 8 AA8 SER A 262 LYS A 275 1 14 HELIX 9 AA9 TYR A 315 GLY A 326 1 12 SHEET 1 AA1 5 VAL A 2 ASP A 3 0 SHEET 2 AA1 5 GLN A 353 THR A 360 -1 O TYR A 356 N VAL A 2 SHEET 3 AA1 5 LYS A 55 SER A 69 -1 N GLY A 67 O VAL A 355 SHEET 4 AA1 5 GLU A 37 LYS A 52 -1 N ILE A 46 O ALA A 61 SHEET 5 AA1 5 GLY A 29 GLU A 34 -1 N ARG A 30 O GLU A 41 SHEET 1 AA2 2 LEU A 7 THR A 10 0 SHEET 2 AA2 2 GLY A 14 LYS A 17 -1 O ILE A 16 N VAL A 8 SHEET 1 AA3 4 LYS A 82 VAL A 85 0 SHEET 2 AA3 4 MET A 72 THR A 77 -1 N VAL A 73 O VAL A 85 SHEET 3 AA3 4 ILE A 338 ILE A 349 -1 O ILE A 349 N MET A 72 SHEET 4 AA3 4 ARG A 116 VAL A 120 -1 N VAL A 119 O ILE A 339 SHEET 1 AA4 2 ARG A 90 THR A 97 0 SHEET 2 AA4 2 GLY A 100 MET A 107 -1 O LYS A 104 N THR A 93 SHEET 1 AA5 3 GLY A 160 THR A 161 0 SHEET 2 AA5 3 ILE A 166 TYR A 170 -1 O GLU A 168 N THR A 161 SHEET 3 AA5 3 ALA A 202 GLN A 206 -1 O LEU A 203 N ILE A 169 SHEET 1 AA6 3 GLU A 257 LEU A 260 0 SHEET 2 AA6 3 TYR A 288 VAL A 293 -1 O TYR A 289 N LEU A 260 SHEET 3 AA6 3 VAL A 280 SER A 285 -1 N SER A 283 O LYS A 290 SHEET 1 AA7 2 THR A 301 VAL A 306 0 SHEET 2 AA7 2 MET A 309 PRO A 314 -1 O LEU A 313 N ILE A 302 SHEET 1 AA8 2 ASN A 364 GLY A 367 0 SHEET 2 AA8 2 THR A 372 HIS A 375 -1 O LEU A 374 N PHE A 365 LINK OD2 ASP A 26 CD CD A 401 1555 4445 2.66 LINK OE1 GLU A 38 CD CD A 401 1555 4445 2.69 LINK OE1 GLU A 105 NI NI A 405 1555 1555 2.40 LINK OE2 GLU A 105 NI NI A 405 1555 1555 1.92 LINK OD1 ASP A 124 NI NI A 404 1555 1555 2.47 LINK OD2 ASP A 124 NI NI A 404 1555 1555 2.29 LINK SG CYS A 171 NI NI A 403 1555 1555 1.95 LINK OE1 GLU A 178 CD CD A 401 1555 1555 2.53 LINK NE2 HIS A 337 NI NI A 404 1555 1555 2.27 LINK NE2 HIS A 363 NI NI A 405 1555 2556 2.08 LINK NE2 HIS A 375 NI NI A 405 1555 1555 2.26 LINK NI NI A 405 O HOH A 502 1555 2556 2.33 LINK NI NI A 405 O HOH A 508 1555 1555 2.78 CRYST1 91.080 81.870 67.690 90.00 112.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010979 0.000000 0.004627 0.00000 SCALE2 0.000000 0.012214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016031 0.00000