HEADER HYDROLASE 14-JAN-22 7QTB TITLE S1 NUCLEASE FROM ASPERGILLUS ORYZAE IN COMPLEX WITH CYTIDINE-5'- TITLE 2 MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE S1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEOXYRIBONUCLEASE S1,ENDONUCLEASE S1,SINGLE-STRANDED- COMPND 5 NUCLEATE ENDONUCLEASE; COMPND 6 EC: 3.1.30.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE RIB40; SOURCE 3 ORGANISM_TAXID: 510516; SOURCE 4 STRAIN: ATCC 42149 / RIB 40; SOURCE 5 ATCC: 42149; SOURCE 6 GENE: NUCS, AO090001000075; SOURCE 7 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS NUCLEASE, COMPLEX, NUCLEOTIDE, HYDROLASE, LATTICE TRANSLOCATION KEYWDS 2 DEFECT EXPDTA X-RAY DIFFRACTION AUTHOR K.ADAMKOVA,T.KOVAL,P.KOLENKO,L.H.OESTERGAARD,J.DOHNALEK REVDAT 2 31-JAN-24 7QTB 1 REMARK REVDAT 1 09-NOV-22 7QTB 0 JRNL AUTH K.ADAMKOVA,T.KOVAL',L.H.OSTERGAARD,J.DUSKOVA,M.MALY, JRNL AUTH 2 L.SVECOVA,T.SKALOVA,P.KOLENKO,J.DOHNALEK JRNL TITL ATOMIC RESOLUTION STUDIES OF S1 NUCLEASE COMPLEXES REVEAL JRNL TITL 2 DETAILS OF RNA INTERACTION WITH THE ENZYME DESPITE MULTIPLE JRNL TITL 3 LATTICE-TRANSLOCATION DEFECTS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 1194 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36189740 JRNL DOI 10.1107/S2059798322008397 REMARK 2 REMARK 2 RESOLUTION. 1.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 196789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.110 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.131 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7456 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 377 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 175 REMARK 3 SOLVENT ATOMS : 898 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04100 REMARK 3 B22 (A**2) : 0.02400 REMARK 3 B33 (A**2) : -0.00700 REMARK 3 B12 (A**2) : -0.04300 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : -0.04800 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4840 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4162 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6695 ; 1.775 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9735 ; 1.717 ; 1.607 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 6.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;36.446 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 709 ;10.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 8.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 669 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6043 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1056 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1190 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 70 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2276 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 575 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 35 ; 0.131 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2317 ; 0.832 ; 0.941 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2316 ; 0.843 ;17.745 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2924 ; 1.030 ; 1.423 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2925 ; 1.039 ; 8.769 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2523 ; 1.514 ; 1.133 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3731 ; 1.687 ; 1.644 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3732 ; 1.687 ; 1.645 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4801 ; 2.574 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS. STRUCTURE FACTORS WERE CORRECTED FOR LATTICE REMARK 3 TRANSLOCATION DEFECT. LAST REFINEMENT CYCLE WAS PERFORMED REMARK 3 AGAINST ALL REFLECTIONS. REMARK 4 REMARK 4 7QTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292119424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 196791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.040 REMARK 200 RESOLUTION RANGE LOW (A) : 44.358 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5FB9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.05 M CALCIUM REMARK 280 CHLORIDE, 0.1 M BIS-TRIS PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3, REMARK 280 350, PROTEIN CONCENTRATION 10 MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 285 REMARK 465 PRO B 286 REMARK 465 SER B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 69 46.76 -107.31 REMARK 500 ASP A 86 -160.91 -100.74 REMARK 500 THR A 165 -155.17 -151.08 REMARK 500 THR A 173 -64.41 -133.58 REMARK 500 THR A 238 -48.35 -136.11 REMARK 500 TYR B 69 41.02 -104.56 REMARK 500 ASP B 86 -162.20 -102.36 REMARK 500 SER B 120 52.82 -140.17 REMARK 500 THR B 165 -154.24 -151.07 REMARK 500 THR B 173 -62.09 -135.82 REMARK 500 THR B 238 -51.21 -136.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 942 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 953 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 954 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 955 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 956 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 21 N REMARK 620 2 TRP A 21 O 78.6 REMARK 620 3 HIS A 26 NE2 115.0 90.4 REMARK 620 4 ASP A 139 OD1 90.2 168.5 92.1 REMARK 620 5 PO4 A 406 O3 131.0 97.5 113.9 91.7 REMARK 620 6 HOH A 501 O 80.9 72.8 154.6 108.1 52.2 REMARK 620 7 HOH A 507 O 139.6 89.8 103.6 100.5 13.1 58.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 411 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 36 O REMARK 620 2 BTB A 409 O1 86.1 REMARK 620 3 HOH A 548 O 92.0 151.9 REMARK 620 4 HOH A 552 O 157.5 109.7 81.4 REMARK 620 5 HOH A 609 O 65.6 126.1 77.5 91.9 REMARK 620 6 HOH A 762 O 107.3 73.5 133.2 64.5 73.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 80 ND1 REMARK 620 2 HIS A 135 NE2 102.4 REMARK 620 3 ASP A 139 OD2 97.8 95.6 REMARK 620 4 PO4 A 406 O3 142.0 110.5 97.5 REMARK 620 5 HOH A 507 O 143.6 100.3 108.0 13.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 ASP A 83 OD2 28.8 REMARK 620 3 ASN A 148 OD1 96.7 80.7 REMARK 620 4 HOH A 527 O 67.4 93.0 96.8 REMARK 620 5 HOH A 528 O 62.9 82.7 158.9 71.1 REMARK 620 6 HOH A 700 O 110.8 83.3 73.9 170.5 117.0 REMARK 620 7 HOH A 711 O 139.5 152.7 77.6 73.5 113.7 106.1 REMARK 620 8 HOH A 900 O 124.9 124.8 133.0 117.5 67.8 71.6 82.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 HIS A 168 NE2 96.0 REMARK 620 3 ASP A 172 OD1 90.4 92.8 REMARK 620 4 ASP A 172 OD2 145.3 89.4 55.0 REMARK 620 5 PO4 A 406 O4 93.0 170.8 89.1 84.3 REMARK 620 6 C5P A 407 O3' 104.1 93.8 163.4 109.8 82.2 REMARK 620 7 HOH A 503 O 96.9 135.2 129.7 103.2 41.1 41.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 21 N REMARK 620 2 TRP B 21 O 79.0 REMARK 620 3 HIS B 26 NE2 115.8 90.9 REMARK 620 4 ASP B 139 OD1 90.5 169.1 91.4 REMARK 620 5 PO4 B 406 O3 130.5 96.6 113.5 92.2 REMARK 620 6 HOH B 501 O 140.8 90.2 101.8 99.7 13.6 REMARK 620 7 HOH B 503 O 77.7 78.5 161.2 101.9 53.4 63.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 412 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 36 O REMARK 620 2 HOH B 584 O 96.8 REMARK 620 3 HOH B 610 O 66.6 79.9 REMARK 620 4 HOH B 775 O 84.9 148.4 128.3 REMARK 620 5 HOH B 829 O 89.4 71.0 139.7 77.5 REMARK 620 6 HOH B 869 O 106.0 133.4 73.1 75.0 146.9 REMARK 620 7 HOH B 911 O 159.2 81.1 92.8 107.7 109.1 63.3 REMARK 620 8 HOH B 945 O 145.9 95.2 147.2 68.7 64.8 88.1 54.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 80 ND1 REMARK 620 2 HIS B 135 NE2 102.4 REMARK 620 3 ASP B 139 OD2 98.8 96.6 REMARK 620 4 PO4 B 406 O3 141.0 110.4 97.9 REMARK 620 5 HOH B 501 O 141.7 99.4 109.6 14.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 411 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 83 OD2 REMARK 620 2 ASP B 83 OD2 29.4 REMARK 620 3 ASN B 148 OD1 84.7 100.5 REMARK 620 4 HOH B 507 O 76.0 53.6 151.5 REMARK 620 5 HOH B 516 O 88.4 64.3 89.0 70.0 REMARK 620 6 HOH B 557 O 124.1 123.0 132.9 75.6 124.1 REMARK 620 7 HOH B 667 O 152.8 137.4 75.4 114.3 73.2 83.0 REMARK 620 8 HOH B 720 O 86.8 114.7 74.6 124.0 163.2 71.4 105.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 122 O REMARK 620 2 BTB B 409 O1 86.8 REMARK 620 3 BTB B 409 O3 136.8 67.3 REMARK 620 4 BTB B 409 O6 137.7 132.4 81.6 REMARK 620 5 BTB B 409 O8 76.8 87.7 132.4 87.9 REMARK 620 6 HOH B 515 O 62.4 148.0 141.7 75.9 77.6 REMARK 620 7 HOH B 565 O 93.2 110.0 66.7 87.6 159.3 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 145 NE2 REMARK 620 2 HIS B 168 NE2 95.2 REMARK 620 3 ASP B 172 OD1 91.1 92.5 REMARK 620 4 ASP B 172 OD2 145.9 89.4 54.9 REMARK 620 5 PO4 B 406 O4 91.7 173.0 88.3 85.4 REMARK 620 6 C5P B 407 O3' 102.6 94.6 163.9 110.7 83.0 REMARK 620 7 HOH B 505 O 97.0 138.1 127.1 101.9 39.5 43.6 REMARK 620 N 1 2 3 4 5 6 DBREF 7QTB A 21 287 UNP P24021 NUS1_ASPOR 21 287 DBREF 7QTB B 21 287 UNP P24021 NUS1_ASPOR 21 287 SEQRES 1 A 267 TRP GLY ASN LEU GLY HIS GLU THR VAL ALA TYR ILE ALA SEQRES 2 A 267 GLN SER PHE VAL ALA SER SER THR GLU SER PHE CYS GLN SEQRES 3 A 267 ASN ILE LEU GLY ASP ASP SER THR SER TYR LEU ALA ASN SEQRES 4 A 267 VAL ALA THR TRP ALA ASP THR TYR LYS TYR THR ASP ALA SEQRES 5 A 267 GLY GLU PHE SER LYS PRO TYR HIS PHE ILE ASP ALA GLN SEQRES 6 A 267 ASP ASN PRO PRO GLN SER CYS GLY VAL ASP TYR ASP ARG SEQRES 7 A 267 ASP CYS GLY SER ALA GLY CYS SER ILE SER ALA ILE GLN SEQRES 8 A 267 ASN TYR THR ASN ILE LEU LEU GLU SER PRO ASN GLY SER SEQRES 9 A 267 GLU ALA LEU ASN ALA LEU LYS PHE VAL VAL HIS ILE ILE SEQRES 10 A 267 GLY ASP ILE HIS GLN PRO LEU HIS ASP GLU ASN LEU GLU SEQRES 11 A 267 ALA GLY GLY ASN GLY ILE ASP VAL THR TYR ASP GLY GLU SEQRES 12 A 267 THR THR ASN LEU HIS HIS ILE TRP ASP THR ASN MET PRO SEQRES 13 A 267 GLU GLU ALA ALA GLY GLY TYR SER LEU SER VAL ALA LYS SEQRES 14 A 267 THR TYR ALA ASP LEU LEU THR GLU ARG ILE LYS THR GLY SEQRES 15 A 267 THR TYR SER SER LYS LYS ASP SER TRP THR ASP GLY ILE SEQRES 16 A 267 ASP ILE LYS ASP PRO VAL SER THR SER MET ILE TRP ALA SEQRES 17 A 267 ALA ASP ALA ASN THR TYR VAL CYS SER THR VAL LEU ASP SEQRES 18 A 267 ASP GLY LEU ALA TYR ILE ASN SER THR ASP LEU SER GLY SEQRES 19 A 267 GLU TYR TYR ASP LYS SER GLN PRO VAL PHE GLU GLU LEU SEQRES 20 A 267 ILE ALA LYS ALA GLY TYR ARG LEU ALA ALA TRP LEU ASP SEQRES 21 A 267 LEU ILE ALA SER GLN PRO SER SEQRES 1 B 267 TRP GLY ASN LEU GLY HIS GLU THR VAL ALA TYR ILE ALA SEQRES 2 B 267 GLN SER PHE VAL ALA SER SER THR GLU SER PHE CYS GLN SEQRES 3 B 267 ASN ILE LEU GLY ASP ASP SER THR SER TYR LEU ALA ASN SEQRES 4 B 267 VAL ALA THR TRP ALA ASP THR TYR LYS TYR THR ASP ALA SEQRES 5 B 267 GLY GLU PHE SER LYS PRO TYR HIS PHE ILE ASP ALA GLN SEQRES 6 B 267 ASP ASN PRO PRO GLN SER CYS GLY VAL ASP TYR ASP ARG SEQRES 7 B 267 ASP CYS GLY SER ALA GLY CYS SER ILE SER ALA ILE GLN SEQRES 8 B 267 ASN TYR THR ASN ILE LEU LEU GLU SER PRO ASN GLY SER SEQRES 9 B 267 GLU ALA LEU ASN ALA LEU LYS PHE VAL VAL HIS ILE ILE SEQRES 10 B 267 GLY ASP ILE HIS GLN PRO LEU HIS ASP GLU ASN LEU GLU SEQRES 11 B 267 ALA GLY GLY ASN GLY ILE ASP VAL THR TYR ASP GLY GLU SEQRES 12 B 267 THR THR ASN LEU HIS HIS ILE TRP ASP THR ASN MET PRO SEQRES 13 B 267 GLU GLU ALA ALA GLY GLY TYR SER LEU SER VAL ALA LYS SEQRES 14 B 267 THR TYR ALA ASP LEU LEU THR GLU ARG ILE LYS THR GLY SEQRES 15 B 267 THR TYR SER SER LYS LYS ASP SER TRP THR ASP GLY ILE SEQRES 16 B 267 ASP ILE LYS ASP PRO VAL SER THR SER MET ILE TRP ALA SEQRES 17 B 267 ALA ASP ALA ASN THR TYR VAL CYS SER THR VAL LEU ASP SEQRES 18 B 267 ASP GLY LEU ALA TYR ILE ASN SER THR ASP LEU SER GLY SEQRES 19 B 267 GLU TYR TYR ASP LYS SER GLN PRO VAL PHE GLU GLU LEU SEQRES 20 B 267 ILE ALA LYS ALA GLY TYR ARG LEU ALA ALA TRP LEU ASP SEQRES 21 B 267 LEU ILE ALA SER GLN PRO SER HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET NAG A 404 16 HET NAG A 405 28 HET PO4 A 406 5 HET C5P A 407 21 HET BTB A 408 14 HET BTB A 409 14 HET CA A 410 1 HET CA A 411 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET NAG B 404 14 HET NAG B 405 14 HET PO4 B 406 5 HET C5P B 407 21 HET BTB B 408 28 HET BTB B 409 14 HET CA B 410 1 HET CA B 411 1 HET CA B 412 1 HETNAM ZN ZINC ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BTB BIS-TRIS BUFFER FORMUL 3 ZN 6(ZN 2+) FORMUL 6 NAG 4(C8 H15 N O6) FORMUL 8 PO4 2(O4 P 3-) FORMUL 9 C5P 2(C9 H14 N3 O8 P) FORMUL 10 BTB 4(C8 H19 N O5) FORMUL 12 CA 5(CA 2+) FORMUL 26 HOH *898(H2 O) HELIX 1 AA1 GLY A 22 VAL A 37 1 16 HELIX 2 AA2 ALA A 38 GLY A 50 1 13 HELIX 3 AA3 LEU A 57 ALA A 61 5 5 HELIX 4 AA4 THR A 62 LYS A 68 1 7 HELIX 5 AA5 GLY A 73 PHE A 81 5 9 HELIX 6 AA6 ASP A 95 CYS A 100 1 6 HELIX 7 AA7 CYS A 105 SER A 120 1 16 HELIX 8 AA8 GLU A 125 HIS A 141 1 17 HELIX 9 AA9 GLN A 142 GLU A 147 5 6 HELIX 10 AB1 LEU A 167 THR A 173 1 7 HELIX 11 AB2 THR A 173 GLY A 181 1 9 HELIX 12 AB3 SER A 184 THR A 201 1 18 HELIX 13 AB4 LYS A 207 TRP A 211 5 5 HELIX 14 AB5 ASP A 219 THR A 238 1 20 HELIX 15 AB6 GLY A 243 THR A 250 1 8 HELIX 16 AB7 GLY A 254 SER A 284 1 31 HELIX 17 AB8 GLY B 22 VAL B 37 1 16 HELIX 18 AB9 ALA B 38 GLY B 50 1 13 HELIX 19 AC1 LEU B 57 ALA B 61 5 5 HELIX 20 AC2 THR B 62 LYS B 68 1 7 HELIX 21 AC3 GLY B 73 PHE B 81 5 9 HELIX 22 AC4 ASP B 95 CYS B 100 1 6 HELIX 23 AC5 CYS B 105 SER B 120 1 16 HELIX 24 AC6 GLU B 125 HIS B 141 1 17 HELIX 25 AC7 GLN B 142 GLU B 147 5 6 HELIX 26 AC8 LEU B 167 THR B 173 1 7 HELIX 27 AC9 THR B 173 GLY B 181 1 9 HELIX 28 AD1 SER B 184 THR B 201 1 18 HELIX 29 AD2 SER B 206 TRP B 211 5 6 HELIX 30 AD3 ASP B 219 THR B 238 1 20 HELIX 31 AD4 GLY B 243 THR B 250 1 8 HELIX 32 AD5 GLY B 254 SER B 284 1 31 SHEET 1 AA1 2 ASP A 157 TYR A 160 0 SHEET 2 AA1 2 GLU A 163 ASN A 166 -1 O THR A 165 N VAL A 158 SHEET 1 AA2 2 ASP B 157 TYR B 160 0 SHEET 2 AA2 2 GLU B 163 ASN B 166 -1 O THR B 165 N VAL B 158 SSBOND 1 CYS A 92 CYS A 236 1555 1555 2.04 SSBOND 2 CYS A 100 CYS A 105 1555 1555 2.10 SSBOND 3 CYS B 92 CYS B 236 1555 1555 2.05 SSBOND 4 CYS B 100 CYS B 105 1555 1555 2.11 LINK ND2 ASN A 112 C1 NAG A 404 1555 1555 1.43 LINK ND2AASN A 248 C1 ANAG A 405 1555 1555 1.44 LINK ND2BASN A 248 C1 BNAG A 405 1555 1555 1.43 LINK ND2 ASN B 112 C1 NAG B 404 1555 1555 1.43 LINK ND2 ASN B 248 C1 NAG B 405 1555 1555 1.41 LINK N TRP A 21 ZN ZN A 401 1555 1555 2.09 LINK O TRP A 21 ZN ZN A 401 1555 1555 2.17 LINK NE2 HIS A 26 ZN ZN A 401 1555 1555 2.02 LINK O PHE A 36 CA CA A 411 1555 1555 2.24 LINK ND1 HIS A 80 ZN ZN A 402 1555 1555 2.02 LINK OD2AASP A 83 CA CA A 410 1555 1555 2.35 LINK OD2BASP A 83 CA CA A 410 1555 1555 2.40 LINK NE2 HIS A 135 ZN ZN A 402 1555 1555 2.03 LINK OD1 ASP A 139 ZN ZN A 401 1555 1555 2.07 LINK OD2 ASP A 139 ZN ZN A 402 1555 1555 2.08 LINK NE2 HIS A 145 ZN ZN A 403 1555 1555 2.05 LINK OD1 ASN A 148 CA CA A 410 1555 1555 2.28 LINK NE2 HIS A 168 ZN ZN A 403 1555 1555 2.09 LINK OD1 ASP A 172 ZN ZN A 403 1555 1555 2.63 LINK OD2 ASP A 172 ZN ZN A 403 1555 1555 2.08 LINK ZN ZN A 401 O3 APO4 A 406 1555 1555 1.96 LINK ZN ZN A 401 O HOH A 501 1555 1555 2.20 LINK ZN ZN A 401 O HOH A 507 1555 1555 2.06 LINK ZN ZN A 402 O3 APO4 A 406 1555 1555 1.97 LINK ZN ZN A 402 O HOH A 507 1555 1555 1.98 LINK ZN ZN A 403 O4 APO4 A 406 1555 1555 2.01 LINK ZN ZN A 403 O3'AC5P A 407 1555 1555 2.16 LINK ZN ZN A 403 O HOH A 503 1555 1555 2.08 LINK O1 BTB A 409 CA CA A 411 1555 1555 2.10 LINK CA CA A 410 O HOH A 527 1555 1555 2.21 LINK CA CA A 410 O HOH A 528 1555 1555 2.50 LINK CA CA A 410 O HOH A 700 1555 1555 2.43 LINK CA CA A 410 O HOH A 711 1555 1555 2.26 LINK CA CA A 410 O HOH A 900 1555 1555 2.46 LINK CA CA A 411 O HOH A 548 1555 1555 2.18 LINK CA CA A 411 O HOH A 552 1555 1555 2.12 LINK CA CA A 411 O HOH A 609 1555 1555 3.04 LINK CA CA A 411 O HOH A 762 1555 1555 2.80 LINK N TRP B 21 ZN ZN B 401 1555 1555 2.09 LINK O TRP B 21 ZN ZN B 401 1555 1555 2.16 LINK NE2 HIS B 26 ZN ZN B 401 1555 1555 2.02 LINK O PHE B 36 CA CA B 412 1555 1555 2.21 LINK ND1 HIS B 80 ZN ZN B 402 1555 1555 2.02 LINK OD2AASP B 83 CA CA B 411 1555 1555 2.33 LINK OD2BASP B 83 CA CA B 411 1555 1555 2.37 LINK O ASN B 122 CA CA B 410 1555 1555 2.48 LINK NE2 HIS B 135 ZN ZN B 402 1555 1555 2.05 LINK OD1 ASP B 139 ZN ZN B 401 1555 1555 2.07 LINK OD2 ASP B 139 ZN ZN B 402 1555 1555 2.05 LINK NE2 HIS B 145 ZN ZN B 403 1555 1555 2.04 LINK OD1 ASN B 148 CA CA B 411 1555 1555 2.30 LINK NE2 HIS B 168 ZN ZN B 403 1555 1555 2.08 LINK OD1 ASP B 172 ZN ZN B 403 1555 1555 2.62 LINK OD2 ASP B 172 ZN ZN B 403 1555 1555 2.09 LINK ZN ZN B 401 O3 APO4 B 406 1555 1555 1.93 LINK ZN ZN B 401 O HOH B 501 1555 1555 2.10 LINK ZN ZN B 401 O HOH B 503 1555 1555 1.95 LINK ZN ZN B 402 O3 APO4 B 406 1555 1555 1.98 LINK ZN ZN B 402 O HOH B 501 1555 1555 1.91 LINK ZN ZN B 403 O4 APO4 B 406 1555 1555 2.04 LINK ZN ZN B 403 O3'AC5P B 407 1555 1555 2.17 LINK ZN ZN B 403 O HOH B 505 1555 1555 2.07 LINK O1 BTB B 409 CA CA B 410 1555 1555 2.41 LINK O3 BTB B 409 CA CA B 410 1555 1555 2.57 LINK O6 BTB B 409 CA CA B 410 1555 1555 2.27 LINK O8 BTB B 409 CA CA B 410 1555 1555 2.41 LINK CA CA B 410 O HOH B 515 1555 1555 2.32 LINK CA CA B 410 O HOH B 565 1555 1555 2.29 LINK CA CA B 411 O HOH B 507 1555 1555 2.49 LINK CA CA B 411 O HOH B 516 1555 1555 2.33 LINK CA CA B 411 O HOH B 557 1555 1655 2.50 LINK CA CA B 411 O HOH B 667 1555 1555 2.28 LINK CA CA B 411 O HOH B 720 1555 1555 2.42 LINK CA CA B 412 O HOH B 584 1555 1555 2.23 LINK CA CA B 412 O HOH B 610 1555 1555 2.98 LINK CA CA B 412 O HOH B 775 1555 1555 2.19 LINK CA CA B 412 O HOH B 829 1555 1555 2.49 LINK CA CA B 412 O HOH B 869 1555 1555 2.81 LINK CA CA B 412 O HOH B 911 1555 1555 2.19 LINK CA CA B 412 O HOH B 945 1555 1555 3.13 CISPEP 1 PRO A 88 PRO A 89 0 -0.30 CISPEP 2 PRO B 88 PRO B 89 0 -1.32 CRYST1 43.075 48.459 65.547 107.47 90.08 105.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023215 0.006526 0.002177 0.00000 SCALE2 0.000000 0.021436 0.007045 0.00000 SCALE3 0.000000 0.000000 0.016059 0.00000