HEADER FLAVOPROTEIN 17-JAN-22 7QU3 TITLE X-RAY STRUCTURE OF FAD DOMAIN OF NQRF OF PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAD BINDING DOMAIN; COMPND 5 SYNONYM: NA(+)-NQR SUBUNIT F,NA(+)-TRANSLOCATING NQR SUBUNIT F,NQR COMPND 6 COMPLEX SUBUNIT F,NQR-1 SUBUNIT F; COMPND 7 EC: 7.2.1.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: N-TERMINAL RESIDUES GLY AND PRO ORIGINATE FROM N- COMPND 11 TERMINAL PURIFICATION TAG (HIS-TAG) AFTER PRESCISSION PROTEASE COMPND 12 CLEAVAGE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 GENE: NQRF, PA14_25350; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NADH OXIDIZING, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.STEGMANN,J.STEUBER,G.FRITZ REVDAT 3 31-JAN-24 7QU3 1 REMARK REVDAT 2 16-MAR-22 7QU3 1 JRNL REVDAT 1 09-FEB-22 7QU3 0 JRNL AUTH J.W.KAMINSKI,L.VERA,D.P.STEGMANN,J.VERING,D.ERIS, JRNL AUTH 2 K.M.L.SMITH,C.Y.HUANG,N.MEIER,J.STEUBER,M.WANG,G.FRITZ, JRNL AUTH 3 J.A.WOJDYLA,M.E.SHARPE JRNL TITL FAST FRAGMENT- AND COMPOUND-SCREENING PIPELINE AT THE SWISS JRNL TITL 2 LIGHT SOURCE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 328 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 35234147 JRNL DOI 10.1107/S2059798322000705 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 38936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5200 - 3.8500 1.00 2851 151 0.1499 0.1528 REMARK 3 2 3.8500 - 3.0600 0.99 2704 141 0.1563 0.1874 REMARK 3 3 3.0600 - 2.6700 0.99 2684 142 0.1792 0.1889 REMARK 3 4 2.6700 - 2.4300 1.00 2670 141 0.1866 0.2421 REMARK 3 5 2.4300 - 2.2500 1.00 2640 138 0.1720 0.2191 REMARK 3 6 2.2500 - 2.1200 1.00 2657 140 0.1620 0.2139 REMARK 3 7 2.1200 - 2.0100 1.00 2644 139 0.1608 0.1916 REMARK 3 8 2.0100 - 1.9300 1.00 2651 140 0.1837 0.2158 REMARK 3 9 1.9300 - 1.8500 1.00 2624 138 0.1815 0.2188 REMARK 3 10 1.8500 - 1.7900 1.00 2630 138 0.1840 0.1986 REMARK 3 11 1.7900 - 1.7300 0.99 2598 137 0.1980 0.2550 REMARK 3 12 1.7300 - 1.6800 1.00 2616 138 0.2350 0.2915 REMARK 3 13 1.6800 - 1.6400 0.99 2616 138 0.2936 0.3111 REMARK 3 14 1.6400 - 1.6000 0.93 2404 126 0.3252 0.3692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.671 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2458 REMARK 3 ANGLE : 1.311 3352 REMARK 3 CHIRALITY : 0.087 330 REMARK 3 PLANARITY : 0.012 436 REMARK 3 DIHEDRAL : 11.888 336 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3506 -5.8995 -13.3144 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.2169 REMARK 3 T33: 0.2455 T12: -0.0191 REMARK 3 T13: 0.0269 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.1885 L22: 0.8813 REMARK 3 L33: 1.0503 L12: -0.2480 REMARK 3 L13: -0.2660 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0011 S13: 0.3183 REMARK 3 S21: -0.0891 S22: 0.0912 S23: -0.0505 REMARK 3 S31: -0.2290 S32: 0.0207 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1709 -9.3443 -11.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.2017 REMARK 3 T33: 0.2308 T12: -0.0179 REMARK 3 T13: 0.0211 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.9133 L22: 0.2001 REMARK 3 L33: 1.2468 L12: 0.2718 REMARK 3 L13: -0.0444 L23: 0.3969 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.0849 S13: 0.1721 REMARK 3 S21: 0.0055 S22: 0.0426 S23: -0.0279 REMARK 3 S31: -0.2147 S32: 0.1932 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1025 -18.7423 -4.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.2378 REMARK 3 T33: 0.2245 T12: -0.0189 REMARK 3 T13: -0.0078 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.8295 L22: 0.5827 REMARK 3 L33: 0.9198 L12: 0.2856 REMARK 3 L13: -0.8201 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.0487 S13: -0.2324 REMARK 3 S21: 0.0718 S22: 0.0275 S23: 0.0992 REMARK 3 S31: 0.0992 S32: -0.1504 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8649 -6.6383 -20.6774 REMARK 3 T TENSOR REMARK 3 T11: 0.3415 T22: 0.1976 REMARK 3 T33: 0.2752 T12: -0.0461 REMARK 3 T13: -0.0187 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1727 L22: 0.3993 REMARK 3 L33: 0.6667 L12: 0.0725 REMARK 3 L13: -0.0916 L23: 0.2006 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: -0.0410 S13: 0.1231 REMARK 3 S21: 0.3555 S22: 0.0464 S23: -0.0499 REMARK 3 S31: -0.6933 S32: 0.3672 S33: -0.0037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3045 -19.3885 -11.3937 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.1913 REMARK 3 T33: 0.2570 T12: -0.0053 REMARK 3 T13: -0.0044 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1793 L22: 0.3191 REMARK 3 L33: 0.9218 L12: 0.0259 REMARK 3 L13: 0.0464 L23: 0.5460 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0583 S13: -0.0948 REMARK 3 S21: 0.0312 S22: -0.0284 S23: 0.2876 REMARK 3 S31: 0.0719 S32: 0.1206 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1191 -9.0865 -26.3899 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.1809 REMARK 3 T33: 0.2123 T12: -0.0048 REMARK 3 T13: 0.0104 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.6584 L22: 0.4904 REMARK 3 L33: 1.3586 L12: 0.5131 REMARK 3 L13: 0.2552 L23: 0.6065 REMARK 3 S TENSOR REMARK 3 S11: -0.0976 S12: 0.1041 S13: 0.0963 REMARK 3 S21: -0.1876 S22: 0.0808 S23: -0.0110 REMARK 3 S31: -0.2817 S32: 0.1404 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7135 -5.8742 -25.4076 REMARK 3 T TENSOR REMARK 3 T11: 0.3164 T22: 0.2323 REMARK 3 T33: 0.2156 T12: 0.1500 REMARK 3 T13: -0.0144 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.1736 L22: 1.1934 REMARK 3 L33: 0.9709 L12: 1.0187 REMARK 3 L13: 0.7921 L23: 0.3336 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: -0.2063 S13: 0.0443 REMARK 3 S21: 0.1384 S22: -0.3075 S23: 0.2301 REMARK 3 S31: -0.4351 S32: -0.4246 S33: -0.2765 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9997 -12.7819 -28.9085 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.2671 REMARK 3 T33: 0.2698 T12: 0.0352 REMARK 3 T13: -0.0237 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.8211 L22: 0.7657 REMARK 3 L33: 0.5453 L12: -0.1485 REMARK 3 L13: 0.5504 L23: 0.2803 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: 0.1880 S13: -0.0938 REMARK 3 S21: -0.1470 S22: 0.0145 S23: 0.2716 REMARK 3 S31: -0.0899 S32: -0.5012 S33: -0.0150 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9294 -21.6138 -37.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.2386 REMARK 3 T33: 0.2626 T12: 0.0206 REMARK 3 T13: 0.0251 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.1149 L22: 0.9008 REMARK 3 L33: 1.3226 L12: 0.1858 REMARK 3 L13: -0.6412 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.2439 S13: -0.4307 REMARK 3 S21: -0.1885 S22: -0.0031 S23: -0.1667 REMARK 3 S31: 0.3638 S32: 0.1739 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.14 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.44 REMARK 200 R MERGE FOR SHELL (I) : 1.02300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UAJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PEG 4000, 0.2 M MGCL2, PH REMARK 280 6.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.77150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.83450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.77150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.83450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 194 O GLU A 328 3544 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 140 47.21 -154.51 REMARK 500 GLU A 265 -13.42 -145.24 REMARK 500 LYS A 299 51.65 39.88 REMARK 500 TYR A 318 18.32 59.75 REMARK 500 TYR A 362 -51.20 -156.95 REMARK 500 ALA A 368 70.49 -156.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 617 O REMARK 620 2 HOH A 661 O 91.2 REMARK 620 3 HOH A 680 O 91.3 93.2 REMARK 620 4 HOH A 721 O 86.8 86.2 178.0 REMARK 620 5 HOH A 812 O 91.0 176.5 89.4 91.2 REMARK 620 6 HOH A 815 O 175.5 89.9 93.0 89.0 87.7 REMARK 620 N 1 2 3 4 5 DBREF 7QU3 A 130 407 UNP Q02PF8 NQRF_PSEAB 130 407 SEQADV 7QU3 GLY A 128 UNP Q02PF8 EXPRESSION TAG SEQADV 7QU3 PRO A 129 UNP Q02PF8 EXPRESSION TAG SEQRES 1 A 280 GLY PRO VAL LYS LYS TRP GLU CYS THR VAL GLU SER ASN SEQRES 2 A 280 PRO ASN VAL ALA THR PHE ILE LYS GLU LEU THR LEU ARG SEQRES 3 A 280 LEU PRO ASP GLY GLU SER VAL ASP PHE ARG ALA GLY GLY SEQRES 4 A 280 TYR VAL GLN LEU GLU CYS PRO PRO HIS VAL VAL GLU TYR SEQRES 5 A 280 LYS ASP PHE ASP ILE GLN PRO GLU TYR ARG GLY ASP TRP SEQRES 6 A 280 ASP LYS PHE ASN MET TRP ARG TYR VAL SER LYS VAL ASP SEQRES 7 A 280 GLU THR VAL ILE ARG ALA TYR SER MET ALA ASN TYR PRO SEQRES 8 A 280 GLU GLU GLN GLY VAL VAL LYS PHE ASN ILE ARG ILE ALA SEQRES 9 A 280 SER PRO PRO PRO GLY SER ASP LEU PRO PRO GLY GLN MET SEQRES 10 A 280 SER SER TRP VAL PHE ASN LEU LYS PRO GLY ASP LYS VAL SEQRES 11 A 280 THR VAL TYR GLY PRO PHE GLY GLU PHE PHE ALA LYS ASP SEQRES 12 A 280 THR GLU ALA GLU MET VAL PHE ILE GLY GLY GLY ALA GLY SEQRES 13 A 280 MET ALA PRO MET ARG SER HIS ILE PHE ASP GLN LEU ARG SEQRES 14 A 280 ARG LEU LYS SER ASN ARG LYS ILE SER PHE TRP TYR GLY SEQRES 15 A 280 ALA ARG SER LEU ARG GLU ALA PHE TYR THR GLU GLU TYR SEQRES 16 A 280 ASP GLN LEU GLN ALA GLU ASN PRO ASN PHE GLN TRP HIS SEQRES 17 A 280 LEU ALA LEU SER ASP PRO GLN PRO GLU ASP ASN TRP THR SEQRES 18 A 280 GLY LEU THR GLY PHE ILE HIS ASN VAL LEU PHE GLU ASN SEQRES 19 A 280 TYR LEU LYS ASP HIS PRO ALA PRO GLU ASP CYS GLU PHE SEQRES 20 A 280 TYR MET CYS GLY PRO PRO MET MET ASN ALA ALA VAL ILE SEQRES 21 A 280 LYS MET LEU THR ASP LEU GLY VAL GLU ARG GLU ASN ILE SEQRES 22 A 280 LEU LEU ASP ASP PHE GLY GLY HET FAD A 501 53 HET RYM A 502 18 HET MG A 503 1 HET DMS A 504 10 HET DMS A 505 10 HET DMS A 506 10 HET DMS A 507 10 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM RYM 4-(BENZIMIDAZOL-1-YLMETHYL)BENZENECARBONITRILE HETNAM MG MAGNESIUM ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 RYM C15 H11 N3 FORMUL 4 MG MG 2+ FORMUL 5 DMS 4(C2 H6 O S) FORMUL 9 HOH *231(H2 O) HELIX 1 AA1 LYS A 180 PHE A 182 5 3 HELIX 2 AA2 GLN A 185 GLU A 187 5 3 HELIX 3 AA3 TYR A 188 PHE A 195 1 8 HELIX 4 AA4 ASN A 196 ARG A 199 5 4 HELIX 5 AA5 GLY A 242 ASN A 250 1 9 HELIX 6 AA6 GLY A 283 ARG A 297 1 15 HELIX 7 AA7 SER A 312 ALA A 316 5 5 HELIX 8 AA8 TYR A 318 ASN A 329 1 12 HELIX 9 AA9 GLN A 342 ASN A 346 5 5 HELIX 10 AB1 PHE A 353 TYR A 362 1 10 HELIX 11 AB2 ALA A 368 CYS A 372 5 5 HELIX 12 AB3 PRO A 379 LEU A 393 1 15 HELIX 13 AB4 GLU A 396 GLU A 398 5 3 SHEET 1 AA1 6 ASN A 142 ALA A 144 0 SHEET 2 AA1 6 ILE A 147 ARG A 153 -1 O ILE A 147 N VAL A 143 SHEET 3 AA1 6 LYS A 131 SER A 139 -1 N THR A 136 O ARG A 153 SHEET 4 AA1 6 LYS A 256 PHE A 263 -1 O VAL A 257 N CYS A 135 SHEET 5 AA1 6 TYR A 167 CYS A 172 -1 N GLN A 169 O TYR A 260 SHEET 6 AA1 6 VAL A 208 SER A 213 -1 O ARG A 210 N LEU A 170 SHEET 1 AA2 3 ASN A 142 ALA A 144 0 SHEET 2 AA2 3 ILE A 147 ARG A 153 -1 O ILE A 147 N VAL A 143 SHEET 3 AA2 3 VAL A 223 ARG A 229 -1 O VAL A 224 N LEU A 152 SHEET 1 AA3 2 HIS A 175 GLU A 178 0 SHEET 2 AA3 2 VAL A 201 VAL A 204 -1 O SER A 202 N VAL A 177 SHEET 1 AA4 6 LEU A 350 THR A 351 0 SHEET 2 AA4 6 PHE A 332 LEU A 338 1 N LEU A 338 O LEU A 350 SHEET 3 AA4 6 ILE A 304 ALA A 310 1 N TYR A 308 O HIS A 335 SHEET 4 AA4 6 MET A 275 GLY A 280 1 N PHE A 277 O SER A 305 SHEET 5 AA4 6 GLU A 373 CYS A 377 1 O GLU A 373 N VAL A 276 SHEET 6 AA4 6 ILE A 400 LEU A 402 1 O LEU A 401 N PHE A 374 LINK MG MG A 503 O HOH A 617 1555 1555 2.10 LINK MG MG A 503 O HOH A 661 1555 4545 2.12 LINK MG MG A 503 O HOH A 680 1555 1555 2.07 LINK MG MG A 503 O HOH A 721 1555 1555 2.04 LINK MG MG A 503 O HOH A 812 1555 1555 2.09 LINK MG MG A 503 O HOH A 815 1555 4545 1.99 CISPEP 1 GLY A 261 PRO A 262 0 -6.32 CRYST1 49.543 57.669 101.440 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009858 0.00000