HEADER IMMUNE SYSTEM 18-JAN-22 7QUH TITLE SIGLEC-8 IN COMPLEX WITH THERAPEUTIC FAB AK002. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIC ACID-BINDING IMMUNOGLOBULIN-TYPE LECTIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SIALIC ACID-BINDING IMMUNOGLOBULIN-TYPE LECTIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SIALIC ACID-BINDING IG-LIKE LECTIN 8; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: SIGLEC-8,SIALOADHESIN FAMILY MEMBER 2,SAF-2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SIGLEC8, SAF2; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SIGLEC, SIALIC ACID, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.P.LENZA,I.OYENARTE,J.JIMENEZ BARBERO,J.ERENO ORBEA REVDAT 2 07-FEB-24 7QUH 1 REMARK REVDAT 1 31-MAY-23 7QUH 0 JRNL AUTH M.P.LENZA,U.ATXABAL,C.NYCHOLAT,I.OYENARTE,A.FRANCONETTI, JRNL AUTH 2 J.I.QUINTANA,S.DELGADO,R.NUNEZ-FRANCO,C.T.GARNICA MARROQUIN, JRNL AUTH 3 H.COELHO,L.UNIONE,G.JIMENEZ-OSES,F.MARCELO,M.SCHUBERT, JRNL AUTH 4 J.C.PAULSON,J.JIMENEZ-BARBERO,J.ERENO-ORBEA JRNL TITL STRUCTURES OF THE INHIBITORY RECEPTOR SIGLEC-8 IN COMPLEX JRNL TITL 2 WITH A HIGH-AFFINITY SIALOSIDE ANALOGUE AND A THERAPEUTIC JRNL TITL 3 ANTIBODY. JRNL REF JACS AU V. 3 204 2023 JRNL REFN ESSN 2691-3704 JRNL PMID 36711084 JRNL DOI 10.1021/JACSAU.2C00592 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 14935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3190 - 4.9000 1.00 3047 179 0.1960 0.2407 REMARK 3 2 4.9000 - 3.8902 1.00 2842 143 0.1916 0.2359 REMARK 3 3 3.8902 - 3.3987 0.82 2395 128 0.2301 0.3375 REMARK 3 4 3.3987 - 3.0880 1.00 2933 155 0.2749 0.3221 REMARK 3 5 3.0880 - 2.8670 1.00 2949 164 0.2990 0.3863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.5232 20.8487 23.7127 REMARK 3 T TENSOR REMARK 3 T11: 0.3189 T22: 0.2898 REMARK 3 T33: 0.2698 T12: 0.0538 REMARK 3 T13: 0.0128 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 1.3537 L22: 0.1481 REMARK 3 L33: 0.2862 L12: -0.2781 REMARK 3 L13: 0.5594 L23: -0.2535 REMARK 3 S TENSOR REMARK 3 S11: -0.1217 S12: -0.0592 S13: -0.0306 REMARK 3 S21: 0.0638 S22: 0.0863 S23: 0.0144 REMARK 3 S31: -0.0887 S32: -0.0268 S33: 0.0303 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.867 REMARK 200 RESOLUTION RANGE LOW (A) : 42.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.23300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.04200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7QU6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CHLORIDE 20% PEG3350 REMARK 280 PH6.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.67150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.27700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.67150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.27700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 SER H 221 REMARK 465 CYS H 222 REMARK 465 CYS L 226 REMARK 465 MET A 17 REMARK 465 GLU A 18 REMARK 465 THR A 154 REMARK 465 HIS A 155 REMARK 465 ARG A 156 REMARK 465 PRO A 157 REMARK 465 ASP A 158 REMARK 465 ILE A 159 REMARK 465 LEU A 160 REMARK 465 ILE A 161 REMARK 465 LEU A 162 REMARK 465 GLY A 163 REMARK 465 THR A 164 REMARK 465 LEU A 165 REMARK 465 GLU A 166 REMARK 465 SER A 167 REMARK 465 GLY A 168 REMARK 465 HIS A 169 REMARK 465 SER A 170 REMARK 465 ARG A 171 REMARK 465 ASN A 172 REMARK 465 LEU A 173 REMARK 465 THR A 174 REMARK 465 CYS A 175 REMARK 465 SER A 176 REMARK 465 VAL A 177 REMARK 465 PRO A 178 REMARK 465 TRP A 179 REMARK 465 ALA A 180 REMARK 465 CYS A 181 REMARK 465 LYS A 182 REMARK 465 GLN A 183 REMARK 465 GLY A 184 REMARK 465 THR A 185 REMARK 465 PRO A 186 REMARK 465 PRO A 187 REMARK 465 MET A 188 REMARK 465 ILE A 189 REMARK 465 SER A 190 REMARK 465 TRP A 191 REMARK 465 ILE A 192 REMARK 465 GLY A 193 REMARK 465 ALA A 194 REMARK 465 SER A 195 REMARK 465 VAL A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 PRO A 199 REMARK 465 GLY A 200 REMARK 465 PRO A 201 REMARK 465 THR A 202 REMARK 465 THR A 203 REMARK 465 ALA A 204 REMARK 465 ARG A 205 REMARK 465 SER A 206 REMARK 465 SER A 207 REMARK 465 VAL A 208 REMARK 465 LEU A 209 REMARK 465 THR A 210 REMARK 465 LEU A 211 REMARK 465 THR A 212 REMARK 465 PRO A 213 REMARK 465 LYS A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 ASP A 217 REMARK 465 HIS A 218 REMARK 465 GLY A 219 REMARK 465 THR A 220 REMARK 465 SER A 221 REMARK 465 LEU A 222 REMARK 465 THR A 223 REMARK 465 CYS A 224 REMARK 465 GLN A 225 REMARK 465 VAL A 226 REMARK 465 THR A 227 REMARK 465 LEU A 228 REMARK 465 PRO A 229 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 GLY A 232 REMARK 465 VAL A 233 REMARK 465 THR A 234 REMARK 465 THR A 235 REMARK 465 THR A 236 REMARK 465 SER A 237 REMARK 465 THR A 238 REMARK 465 VAL A 239 REMARK 465 ARG A 240 REMARK 465 LEU A 241 REMARK 465 ASP A 242 REMARK 465 VAL A 243 REMARK 465 SER A 244 REMARK 465 TYR A 245 REMARK 465 PRO A 246 REMARK 465 PRO A 247 REMARK 465 TRP A 248 REMARK 465 ASN A 249 REMARK 465 LEU A 250 REMARK 465 THR A 251 REMARK 465 MET A 252 REMARK 465 THR A 253 REMARK 465 VAL A 254 REMARK 465 PHE A 255 REMARK 465 GLN A 256 REMARK 465 GLY A 257 REMARK 465 ASP A 258 REMARK 465 ALA A 259 REMARK 465 THR A 260 REMARK 465 ALA A 261 REMARK 465 SER A 262 REMARK 465 THR A 263 REMARK 465 ALA A 264 REMARK 465 LEU A 265 REMARK 465 GLY A 266 REMARK 465 ASN A 267 REMARK 465 GLY A 268 REMARK 465 SER A 269 REMARK 465 SER A 270 REMARK 465 LEU A 271 REMARK 465 SER A 272 REMARK 465 VAL A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 GLY A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 LEU A 279 REMARK 465 ARG A 280 REMARK 465 LEU A 281 REMARK 465 VAL A 282 REMARK 465 CYS A 283 REMARK 465 ALA A 284 REMARK 465 VAL A 285 REMARK 465 ASN A 286 REMARK 465 SER A 287 REMARK 465 ASN A 288 REMARK 465 PRO A 289 REMARK 465 PRO A 290 REMARK 465 ALA A 291 REMARK 465 ARG A 292 REMARK 465 LEU A 293 REMARK 465 SER A 294 REMARK 465 TRP A 295 REMARK 465 THR A 296 REMARK 465 ARG A 297 REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 THR A 301 REMARK 465 LEU A 302 REMARK 465 CYS A 303 REMARK 465 PRO A 304 REMARK 465 SER A 305 REMARK 465 ARG A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 ASN A 309 REMARK 465 PRO A 310 REMARK 465 GLY A 311 REMARK 465 LEU A 312 REMARK 465 LEU A 313 REMARK 465 GLU A 314 REMARK 465 LEU A 315 REMARK 465 PRO A 316 REMARK 465 ARG A 317 REMARK 465 VAL A 318 REMARK 465 HIS A 319 REMARK 465 VAL A 320 REMARK 465 ARG A 321 REMARK 465 ASP A 322 REMARK 465 GLU A 323 REMARK 465 GLY A 324 REMARK 465 GLU A 325 REMARK 465 PHE A 326 REMARK 465 THR A 327 REMARK 465 CYS A 328 REMARK 465 ARG A 329 REMARK 465 ALA A 330 REMARK 465 GLN A 331 REMARK 465 ASN A 332 REMARK 465 ALA A 333 REMARK 465 GLN A 334 REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 GLN A 337 REMARK 465 HIS A 338 REMARK 465 ILE A 339 REMARK 465 SER A 340 REMARK 465 LEU A 341 REMARK 465 SER A 342 REMARK 465 LEU A 343 REMARK 465 SER A 344 REMARK 465 LEU A 345 REMARK 465 GLN A 346 REMARK 465 ASN A 347 REMARK 465 GLU A 348 REMARK 465 GLY A 349 REMARK 465 THR A 350 REMARK 465 GLY A 351 REMARK 465 THR A 352 REMARK 465 GLY A 353 REMARK 465 SER A 354 REMARK 465 LEU A 355 REMARK 465 VAL A 356 REMARK 465 PRO A 357 REMARK 465 ARG A 358 REMARK 465 GLY A 359 REMARK 465 SER A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 212 CG CD CE NZ REMARK 470 LYS L 181 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 133 -159.95 172.92 REMARK 500 ASP H 150 69.59 62.85 REMARK 500 THR L 54 -47.94 74.91 REMARK 500 SER L 83 -92.35 -29.77 REMARK 500 ALA L 92 -169.56 -167.28 REMARK 500 ASN L 150 77.60 48.99 REMARK 500 LYS L 202 -55.10 -127.38 REMARK 500 GLN A 75 -35.86 -140.64 REMARK 500 ASN A 105 37.12 72.11 REMARK 500 GLN A 138 -157.88 -137.46 REMARK 500 THR A 143 -169.06 -127.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QU6 RELATED DB: PDB DBREF 7QUH H 1 222 PDB 7QUH 7QUH 1 222 DBREF 7QUH L 1 226 PDB 7QUH 7QUH 1 226 DBREF 7QUH A 17 352 UNP Q9NYZ4 SIGL8_HUMAN 17 352 SEQADV 7QUH SER A 42 UNP Q9NYZ4 CYS 42 CONFLICT SEQADV 7QUH GLY A 353 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH SER A 354 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH LEU A 355 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH VAL A 356 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH PRO A 357 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH ARG A 358 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH GLY A 359 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH SER A 360 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH HIS A 361 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH HIS A 362 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH HIS A 363 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH HIS A 364 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH HIS A 365 UNP Q9NYZ4 EXPRESSION TAG SEQADV 7QUH HIS A 366 UNP Q9NYZ4 EXPRESSION TAG SEQRES 1 H 223 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 223 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 223 PHE SER LEU THR ILE TYR GLY ALA HIS TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TRP SEQRES 5 H 223 ALA GLY GLY SER THR ASN TYR ASN SER ALA LEU MET SER SEQRES 6 H 223 ARG PHE THR ILE SER LYS ASP ASN SER LYS ASN THR VAL SEQRES 7 H 223 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 223 VAL TYR TYR CYS ALA ARG ASP GLY SER SER PRO TYR TYR SEQRES 9 H 223 TYR SER MET GLU TYR TRP GLY GLN GLY THR THR VAL THR SEQRES 10 H 223 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 223 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 223 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 223 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 223 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 223 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 223 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 223 PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 18 H 223 SER CYS SEQRES 1 L 213 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 213 SER PRO GLY GLU ARG ALA THR LEU SER CYS SER ALA THR SEQRES 3 L 213 SER SER VAL SER TYR MET HIS TRP PHE GLN GLN LYS PRO SEQRES 4 L 213 GLY GLN ALA PRO ARG LEU LEU ILE TYR SER THR SER ASN SEQRES 5 L 213 LEU ALA SER GLY ILE PRO ALA ARG PHE SER GLY SER GLY SEQRES 6 L 213 SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU GLU SEQRES 7 L 213 PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN ARG SER SEQRES 8 L 213 SER TYR PRO PHE THR PHE GLY PRO GLY THR LYS LEU ASP SEQRES 9 L 213 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 213 ASN ARG GLY GLU CYS SEQRES 1 A 350 MET GLU GLY ASP ARG GLN TYR GLY ASP GLY TYR LEU LEU SEQRES 2 A 350 GLN VAL GLN GLU LEU VAL THR VAL GLN GLU GLY LEU SER SEQRES 3 A 350 VAL HIS VAL PRO CYS SER PHE SER TYR PRO GLN ASP GLY SEQRES 4 A 350 TRP THR ASP SER ASP PRO VAL HIS GLY TYR TRP PHE ARG SEQRES 5 A 350 ALA GLY ASP ARG PRO TYR GLN ASP ALA PRO VAL ALA THR SEQRES 6 A 350 ASN ASN PRO ASP ARG GLU VAL GLN ALA GLU THR GLN GLY SEQRES 7 A 350 ARG PHE GLN LEU LEU GLY ASP ILE TRP SER ASN ASP CYS SEQRES 8 A 350 SER LEU SER ILE ARG ASP ALA ARG LYS ARG ASP LYS GLY SEQRES 9 A 350 SER TYR PHE PHE ARG LEU GLU ARG GLY SER MET LYS TRP SEQRES 10 A 350 SER TYR LYS SER GLN LEU ASN TYR LYS THR LYS GLN LEU SEQRES 11 A 350 SER VAL PHE VAL THR ALA LEU THR HIS ARG PRO ASP ILE SEQRES 12 A 350 LEU ILE LEU GLY THR LEU GLU SER GLY HIS SER ARG ASN SEQRES 13 A 350 LEU THR CYS SER VAL PRO TRP ALA CYS LYS GLN GLY THR SEQRES 14 A 350 PRO PRO MET ILE SER TRP ILE GLY ALA SER VAL SER SER SEQRES 15 A 350 PRO GLY PRO THR THR ALA ARG SER SER VAL LEU THR LEU SEQRES 16 A 350 THR PRO LYS PRO GLN ASP HIS GLY THR SER LEU THR CYS SEQRES 17 A 350 GLN VAL THR LEU PRO GLY THR GLY VAL THR THR THR SER SEQRES 18 A 350 THR VAL ARG LEU ASP VAL SER TYR PRO PRO TRP ASN LEU SEQRES 19 A 350 THR MET THR VAL PHE GLN GLY ASP ALA THR ALA SER THR SEQRES 20 A 350 ALA LEU GLY ASN GLY SER SER LEU SER VAL LEU GLU GLY SEQRES 21 A 350 GLN SER LEU ARG LEU VAL CYS ALA VAL ASN SER ASN PRO SEQRES 22 A 350 PRO ALA ARG LEU SER TRP THR ARG GLY SER LEU THR LEU SEQRES 23 A 350 CYS PRO SER ARG SER SER ASN PRO GLY LEU LEU GLU LEU SEQRES 24 A 350 PRO ARG VAL HIS VAL ARG ASP GLU GLY GLU PHE THR CYS SEQRES 25 A 350 ARG ALA GLN ASN ALA GLN GLY SER GLN HIS ILE SER LEU SEQRES 26 A 350 SER LEU SER LEU GLN ASN GLU GLY THR GLY THR GLY SER SEQRES 27 A 350 LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER H 64 MET H 67 5 4 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 SER H 193 LEU H 195 5 3 HELIX 4 AA4 LYS H 207 ASN H 210 5 4 HELIX 5 AA5 SER L 133 LYS L 138 1 6 HELIX 6 AA6 LYS L 195 HIS L 201 1 7 HELIX 7 AA7 ASP A 101 ASN A 105 5 5 HELIX 8 AA8 ARG A 115 LYS A 119 5 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 81 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 71 ASP H 76 -1 N SER H 74 O TYR H 82A SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 115 SHEET 4 AA2 6 ALA H 35 GLN H 41 -1 N HIS H 36 O ALA H 97 SHEET 5 AA2 6 GLU H 48 ILE H 54 -1 O GLU H 48 N ARG H 40 SHEET 6 AA2 6 THR H 60 TYR H 62 -1 O ASN H 61 N VAL H 53 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 AA3 4 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 115 SHEET 4 AA3 4 TYR H 107 TRP H 109 -1 O TYR H 107 N ARG H 98 SHEET 1 AA4 4 SER H 126 LEU H 130 0 SHEET 2 AA4 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA4 4 TYR H 182 PRO H 191 -1 O VAL H 190 N ALA H 142 SHEET 4 AA4 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 AA5 4 SER H 126 LEU H 130 0 SHEET 2 AA5 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA5 4 TYR H 182 PRO H 191 -1 O VAL H 190 N ALA H 142 SHEET 4 AA5 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 AA6 3 THR H 157 TRP H 160 0 SHEET 2 AA6 3 ILE H 201 HIS H 206 -1 O ASN H 205 N THR H 157 SHEET 3 AA6 3 THR H 211 ARG H 216 -1 O THR H 211 N HIS H 206 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 26 -1 O SER L 25 N THR L 5 SHEET 3 AA7 4 ASP L 77 ILE L 82 -1 O LEU L 80 N LEU L 21 SHEET 4 AA7 4 PHE L 66 SER L 73 -1 N SER L 70 O THR L 79 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 114 ILE L 118 1 O ASP L 117 N LEU L 11 SHEET 3 AA8 6 VAL L 94 GLN L 102 -1 N TYR L 96 O THR L 114 SHEET 4 AA8 6 MET L 34 GLN L 40 -1 N HIS L 35 O GLN L 101 SHEET 5 AA8 6 ARG L 47 TYR L 51 -1 O ILE L 50 N TRP L 37 SHEET 6 AA8 6 ASN L 56 LEU L 57 -1 O ASN L 56 N TYR L 51 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 114 ILE L 118 1 O ASP L 117 N LEU L 11 SHEET 3 AA9 4 VAL L 94 GLN L 102 -1 N TYR L 96 O THR L 114 SHEET 4 AA9 4 THR L 109 PHE L 110 -1 O THR L 109 N GLN L 102 SHEET 1 AB1 4 SER L 126 PHE L 130 0 SHEET 2 AB1 4 THR L 141 PHE L 151 -1 O LEU L 147 N PHE L 128 SHEET 3 AB1 4 TYR L 185 SER L 194 -1 O TYR L 185 N PHE L 151 SHEET 4 AB1 4 SER L 171 VAL L 175 -1 N GLN L 172 O THR L 190 SHEET 1 AB2 3 LYS L 157 VAL L 162 0 SHEET 2 AB2 3 VAL L 203 THR L 209 -1 O GLU L 207 N GLN L 159 SHEET 3 AB2 3 VAL L 217 ASN L 222 -1 O VAL L 217 N VAL L 208 SHEET 1 AB3 2 LEU A 28 GLN A 30 0 SHEET 2 AB3 2 SER A 48 SER A 50 -1 O SER A 50 N LEU A 28 SHEET 1 AB4 5 LEU A 34 GLN A 38 0 SHEET 2 AB4 5 LEU A 146 THR A 151 1 O PHE A 149 N VAL A 35 SHEET 3 AB4 5 GLY A 120 ARG A 128 -1 N GLY A 120 O VAL A 148 SHEET 4 AB4 5 VAL A 62 ARG A 68 -1 N HIS A 63 O GLU A 127 SHEET 5 AB4 5 ALA A 80 THR A 81 -1 O ALA A 80 N TRP A 66 SHEET 1 AB5 4 LEU A 34 GLN A 38 0 SHEET 2 AB5 4 LEU A 146 THR A 151 1 O PHE A 149 N VAL A 35 SHEET 3 AB5 4 GLY A 120 ARG A 128 -1 N GLY A 120 O VAL A 148 SHEET 4 AB5 4 MET A 131 SER A 134 -1 O MET A 131 N ARG A 128 SHEET 1 AB6 3 VAL A 43 VAL A 45 0 SHEET 2 AB6 3 LEU A 109 ILE A 111 -1 O LEU A 109 N VAL A 45 SHEET 3 AB6 3 PHE A 96 LEU A 98 -1 N GLN A 97 O SER A 110 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 146 CYS H 202 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 99 1555 1555 2.03 SSBOND 4 CYS L 146 CYS L 206 1555 1555 2.04 SSBOND 5 CYS A 47 CYS A 107 1555 1555 2.05 CISPEP 1 SER H 100C PRO H 100D 0 -3.30 CISPEP 2 PHE H 152 PRO H 153 0 -5.23 CISPEP 3 GLU H 154 PRO H 155 0 1.85 CISPEP 4 SER L 7 PRO L 8 0 -2.72 CISPEP 5 TYR L 106 PRO L 107 0 0.91 CISPEP 6 TYR L 152 PRO L 153 0 0.68 CRYST1 145.343 44.554 111.387 90.00 111.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006880 0.000000 0.002697 0.00000 SCALE2 0.000000 0.022445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009643 0.00000