HEADER DNA BINDING PROTEIN 20-JAN-22 7QVB TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING PROTEIN DDRC FROM DEINOCOCCUS TITLE 2 RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE RESPONSE PROTEIN C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GAMG CORRESPOND TO THE EXTRA AMINO ACIDS ADDED TO THE COMPND 6 N-TERMINUS AFTER CLEAVAGE OF THE HIS-TAG BY THE TEV PROTEASE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 GENE: DDRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS D. RADIODURANS, RADIATION RESISTANCE, DNA-BINDING PROTEIN, DIMER, KEYWDS 2 DOMAIN-SWAPPING, DDRC, NUCLEOID-ASSOCIATED PROTEIN, DNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.BANNEVILLE,J.P.COLLETIER,J.TIMMINS REVDAT 3 03-AUG-22 7QVB 1 JRNL REVDAT 2 20-JUL-22 7QVB 1 JRNL REVDAT 1 22-JUN-22 7QVB 0 JRNL AUTH A.S.BANNEVILLE,C.BOUTHIER DE LA TOUR,S.DE BONIS,C.HOGNON, JRNL AUTH 2 J.P.COLLETIER,J.M.TEULON,A.LE ROY,J.L.PELLEQUER,A.MONARI, JRNL AUTH 3 F.DEHEZ,F.CONFALONIERI,P.SERVANT,J.TIMMINS JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF DDRC, A NOVEL JRNL TITL 2 DNA DAMAGE-INDUCED NUCLEOID ASSOCIATED PROTEIN INVOLVED IN JRNL TITL 3 DNA COMPACTION. JRNL REF NUCLEIC ACIDS RES. V. 50 7680 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35801857 JRNL DOI 10.1093/NAR/GKAC563 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.006 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1844 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.64900 REMARK 3 B22 (A**2) : -1.64900 REMARK 3 B33 (A**2) : 5.34800 REMARK 3 B12 (A**2) : -0.82400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.444 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3505 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3322 ; 0.001 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4763 ; 1.233 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7564 ; 1.132 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 4.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;23.197 ;19.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;14.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;13.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4023 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 879 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 715 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 63 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1644 ; 0.138 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1774 ; 3.784 ; 5.123 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1772 ; 3.785 ; 5.122 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2215 ; 5.304 ; 7.680 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2215 ; 5.303 ; 7.680 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1731 ; 4.615 ; 5.695 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1676 ; 3.861 ; 5.467 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2546 ; 6.529 ; 8.415 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2463 ; 5.351 ; 8.072 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6826 ; 0.877 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): 43.3570 6.8328 8.0739 REMARK 3 T TENSOR REMARK 3 T11: 0.3454 T22: 0.1152 REMARK 3 T33: 0.1159 T12: -0.0990 REMARK 3 T13: 0.0051 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4716 L22: 2.6493 REMARK 3 L33: 2.2164 L12: -0.5579 REMARK 3 L13: -0.0911 L23: 1.9452 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: -0.0155 S13: -0.0555 REMARK 3 S21: -0.4130 S22: -0.0542 S23: 0.2417 REMARK 3 S31: -0.2447 S32: -0.2999 S33: 0.1889 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2543 16.0490 10.6547 REMARK 3 T TENSOR REMARK 3 T11: 0.3730 T22: 0.1210 REMARK 3 T33: 0.1187 T12: -0.0543 REMARK 3 T13: -0.0982 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 1.4817 L22: 1.4869 REMARK 3 L33: 1.8159 L12: -0.6329 REMARK 3 L13: -1.0854 L23: 0.5510 REMARK 3 S TENSOR REMARK 3 S11: -0.2396 S12: 0.1184 S13: -0.0663 REMARK 3 S21: -0.2303 S22: -0.0329 S23: 0.1808 REMARK 3 S31: -0.0919 S32: -0.3429 S33: 0.2725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7QVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292119254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 2.01200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL BIPYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH8.0, 1.2 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.12467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.06233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.06233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.12467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -214.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 159 REMARK 465 SER A 160 REMARK 465 ALA A 161 REMARK 465 SER A 162 REMARK 465 VAL A 163 REMARK 465 ARG A 164 REMARK 465 GLN A 165 REMARK 465 GLU A 166 REMARK 465 ARG A 167 REMARK 465 GLY A 168 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 GLY A 231 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASN B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 227 CG1 CG2 REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 VAL B 134 CG1 CG2 REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 206 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 151.48 -45.71 REMARK 500 ALA A 56 37.69 -82.98 REMARK 500 SER B 123 -161.28 -71.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QVB A -3 231 PDB 7QVB 7QVB -3 231 DBREF 7QVB B -3 231 PDB 7QVB 7QVB -3 231 SEQRES 1 A 235 GLY ALA MET GLY MET LYS ASN ALA PRO LEU THR LEU ASN SEQRES 2 A 235 PHE GLY SER VAL ARG LEU PRO VAL SER ALA ASP GLY LEU SEQRES 3 A 235 LEU HIS ALA PRO THR ALA GLN GLN GLN LEU GLY LEU THR SEQRES 4 A 235 GLN SER TRP GLU ALA ALA LEU VAL GLU HIS GLY LEU PRO SEQRES 5 A 235 GLU THR TYR ARG ASP PHE GLY ALA GLY PRO GLU ALA ALA SEQRES 6 A 235 VAL SER VAL PRO ASP PHE VAL ALA LEU ALA PHE ALA LEU SEQRES 7 A 235 ASP THR PRO GLU ALA ARG ARG TRP GLN LYS ARG ALA ARG SEQRES 8 A 235 GLU LEU LEU ALA ARG ALA MET GLN GLY ASP VAL ARG VAL SEQRES 9 A 235 ALA ALA GLN ILE ALA GLU ARG ASN PRO GLU PRO ASP ALA SEQRES 10 A 235 ARG ARG TRP LEU ALA ALA ARG LEU GLU SER THR GLY ALA SEQRES 11 A 235 ARG ARG GLU LEU LEU ALA THR VAL ALA ARG HIS GLY GLY SEQRES 12 A 235 GLU GLY ARG VAL TYR GLY GLN LEU GLY SER ILE SER ASN SEQRES 13 A 235 ARG THR VAL LEU GLY LYS ASP SER ALA SER VAL ARG GLN SEQRES 14 A 235 GLU ARG GLY VAL LYS ALA THR ARG ASP GLY LEU THR SER SEQRES 15 A 235 ALA GLU LEU LEU ARG LEU ALA TYR ILE ASP THR VAL THR SEQRES 16 A 235 ALA ARG ALA ILE GLN GLU SER GLU ALA ARG GLY ASN ALA SEQRES 17 A 235 ALA ILE LEU THR LEU HIS GLU GLN VAL ALA ARG SER GLU SEQRES 18 A 235 ARG GLN SER TRP GLU ARG ALA GLY GLN VAL GLN ARG VAL SEQRES 19 A 235 GLY SEQRES 1 B 235 GLY ALA MET GLY MET LYS ASN ALA PRO LEU THR LEU ASN SEQRES 2 B 235 PHE GLY SER VAL ARG LEU PRO VAL SER ALA ASP GLY LEU SEQRES 3 B 235 LEU HIS ALA PRO THR ALA GLN GLN GLN LEU GLY LEU THR SEQRES 4 B 235 GLN SER TRP GLU ALA ALA LEU VAL GLU HIS GLY LEU PRO SEQRES 5 B 235 GLU THR TYR ARG ASP PHE GLY ALA GLY PRO GLU ALA ALA SEQRES 6 B 235 VAL SER VAL PRO ASP PHE VAL ALA LEU ALA PHE ALA LEU SEQRES 7 B 235 ASP THR PRO GLU ALA ARG ARG TRP GLN LYS ARG ALA ARG SEQRES 8 B 235 GLU LEU LEU ALA ARG ALA MET GLN GLY ASP VAL ARG VAL SEQRES 9 B 235 ALA ALA GLN ILE ALA GLU ARG ASN PRO GLU PRO ASP ALA SEQRES 10 B 235 ARG ARG TRP LEU ALA ALA ARG LEU GLU SER THR GLY ALA SEQRES 11 B 235 ARG ARG GLU LEU LEU ALA THR VAL ALA ARG HIS GLY GLY SEQRES 12 B 235 GLU GLY ARG VAL TYR GLY GLN LEU GLY SER ILE SER ASN SEQRES 13 B 235 ARG THR VAL LEU GLY LYS ASP SER ALA SER VAL ARG GLN SEQRES 14 B 235 GLU ARG GLY VAL LYS ALA THR ARG ASP GLY LEU THR SER SEQRES 15 B 235 ALA GLU LEU LEU ARG LEU ALA TYR ILE ASP THR VAL THR SEQRES 16 B 235 ALA ARG ALA ILE GLN GLU SER GLU ALA ARG GLY ASN ALA SEQRES 17 B 235 ALA ILE LEU THR LEU HIS GLU GLN VAL ALA ARG SER GLU SEQRES 18 B 235 ARG GLN SER TRP GLU ARG ALA GLY GLN VAL GLN ARG VAL SEQRES 19 B 235 GLY HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET SO4 B 308 5 HET SO4 B 309 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 14(O4 S 2-) FORMUL 17 HOH *70(H2 O) HELIX 1 AA1 ALA A 25 GLN A 31 1 7 HELIX 2 AA2 SER A 37 GLY A 46 1 10 HELIX 3 AA3 VAL A 64 LEU A 74 1 11 HELIX 4 AA4 THR A 76 GLY A 96 1 21 HELIX 5 AA5 ASP A 97 GLU A 106 1 10 HELIX 6 AA6 GLU A 110 HIS A 137 1 28 HELIX 7 AA7 ARG A 142 GLY A 157 1 16 HELIX 8 AA8 ALA A 171 LEU A 176 5 6 HELIX 9 AA9 THR A 177 GLU A 199 1 23 HELIX 10 AB1 GLY A 202 GLY A 225 1 24 HELIX 11 AB2 ALA B 25 LEU B 32 1 8 HELIX 12 AB3 SER B 37 GLY B 46 1 10 HELIX 13 AB4 VAL B 64 LEU B 74 1 11 HELIX 14 AB5 THR B 76 GLN B 95 1 20 HELIX 15 AB6 ASP B 97 ASN B 108 1 12 HELIX 16 AB7 GLU B 110 LEU B 121 1 12 HELIX 17 AB8 GLY B 125 HIS B 137 1 13 HELIX 18 AB9 ARG B 142 GLY B 157 1 16 HELIX 19 AC1 ASP B 159 GLY B 168 1 10 HELIX 20 AC2 ALA B 171 GLY B 175 5 5 HELIX 21 AC3 THR B 177 GLU B 199 1 23 HELIX 22 AC4 GLY B 202 GLY B 225 1 24 SHEET 1 AA1 2 THR A 7 PHE A 10 0 SHEET 2 AA1 2 VAL A 13 PRO A 16 -1 O LEU A 15 N LEU A 8 SHEET 1 AA2 3 LEU A 22 HIS A 24 0 SHEET 2 AA2 3 PRO A 58 SER A 63 -1 O VAL A 62 N LEU A 23 SHEET 3 AA2 3 TYR A 51 ASP A 53 -1 N ARG A 52 O GLU A 59 SHEET 1 AA3 2 LEU B 6 PHE B 10 0 SHEET 2 AA3 2 VAL B 13 VAL B 17 -1 O LEU B 15 N LEU B 8 SHEET 1 AA4 3 LEU B 22 HIS B 24 0 SHEET 2 AA4 3 PRO B 58 SER B 63 -1 O VAL B 62 N LEU B 23 SHEET 3 AA4 3 THR B 50 ASP B 53 -1 N THR B 50 O ALA B 61 CRYST1 111.721 111.721 105.187 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008951 0.005168 0.000000 0.00000 SCALE2 0.000000 0.010336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009507 0.00000