HEADER STRUCTURAL PROTEIN 23-JAN-22 7QVS TITLE PSEUDOMONAS AERUGINOSA NICOTINAMIDE ADENINE DINUCLEOTIDE KINASE (NADK) TITLE 2 STRUCTURE IN COMPLEX WITH NADP CAVEAT 7QVS HIS A 33 HAS WRONG CHIRALITY AT ATOM CA ASP A 102 HAS WRONG CAVEAT 2 7QVS CHIRALITY AT ATOM CA LYS A 229 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 7QVS CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PPNK, NADK, CAZ10_03565, CSB93_3290, DY940_12450, E4V10_28275, SOURCE 5 IPC116_13595, IPC1295_03320, IPC1316_10105, IPC1323_13200, SOURCE 6 IPC1339_13410, IPC1598_02670, IPC29_18225, IPC614_04535, SOURCE 7 IPC737_03790, IPC90_26155, NCTC12924_04243, PAMH19_1983, SOURCE 8 RW109_RW109_02738; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASES, ANTIBIOTICS, INHIBITORS, DRUG DISCOVERY, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.RAHIMOVA,M.GELIN,G.LABESSE,C.LIONNE REVDAT 3 07-FEB-24 7QVS 1 REMARK REVDAT 2 01-FEB-23 7QVS 1 JRNL REVDAT 1 14-SEP-22 7QVS 0 JRNL AUTH R.RAHIMOVA,P.NOGARET,V.HUTEAU,M.GELIN,D.A.CLEMENT,G.LABESSE, JRNL AUTH 2 S.POCHET,A.B.BLANC-POTARD,C.LIONNE JRNL TITL STRUCTURE-BASED DESIGN, SYNTHESIS AND BIOLOGICAL EVALUATION JRNL TITL 2 OF A NAD + ANALOGUE TARGETING PSEUDOMONAS AERUGINOSA NAD JRNL TITL 3 KINASE. JRNL REF FEBS J. V. 290 482 2023 JRNL REFN ISSN 1742-464X JRNL PMID 36036789 JRNL DOI 10.1111/FEBS.16604 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5900 - 5.1100 1.00 2982 145 0.2212 0.2420 REMARK 3 2 5.1100 - 4.0600 1.00 2820 118 0.1691 0.1839 REMARK 3 3 4.0600 - 3.5500 0.99 2759 129 0.1727 0.2385 REMARK 3 4 3.5500 - 3.2200 1.00 2719 162 0.1842 0.2229 REMARK 3 5 3.2200 - 2.9900 1.00 2730 138 0.2018 0.2161 REMARK 3 6 2.9900 - 2.8100 1.00 2732 143 0.2091 0.2587 REMARK 3 7 2.8100 - 2.6700 1.00 2662 155 0.2158 0.2561 REMARK 3 8 2.6700 - 2.5600 1.00 2718 141 0.2198 0.2634 REMARK 3 9 2.5600 - 2.4600 1.00 2685 137 0.2087 0.2565 REMARK 3 10 2.4600 - 2.3700 1.00 2680 156 0.2101 0.2765 REMARK 3 11 2.3700 - 2.3000 0.99 2649 146 0.2254 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.277 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.604 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4531 REMARK 3 ANGLE : 1.517 6185 REMARK 3 CHIRALITY : 0.213 719 REMARK 3 PLANARITY : 0.013 779 REMARK 3 DIHEDRAL : 17.375 1621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5175 -14.1127 -7.5816 REMARK 3 T TENSOR REMARK 3 T11: 0.8258 T22: 0.7724 REMARK 3 T33: 0.5830 T12: -0.3708 REMARK 3 T13: 0.0371 T23: -0.2864 REMARK 3 L TENSOR REMARK 3 L11: 0.2457 L22: 2.0075 REMARK 3 L33: 2.4265 L12: 0.5647 REMARK 3 L13: 0.7324 L23: 1.2817 REMARK 3 S TENSOR REMARK 3 S11: -0.2715 S12: 0.3165 S13: -0.2564 REMARK 3 S21: -0.5252 S22: -0.0062 S23: 0.3271 REMARK 3 S31: 0.4114 S32: -0.8047 S33: 0.4561 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0279 -6.9840 0.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.5098 T22: 0.3288 REMARK 3 T33: 0.3518 T12: -0.1013 REMARK 3 T13: 0.0831 T23: -0.0966 REMARK 3 L TENSOR REMARK 3 L11: 1.2301 L22: 2.1528 REMARK 3 L33: 2.5446 L12: 0.6735 REMARK 3 L13: 0.0260 L23: 1.7278 REMARK 3 S TENSOR REMARK 3 S11: -0.3450 S12: 0.4218 S13: -0.3109 REMARK 3 S21: -0.5452 S22: 0.0312 S23: 0.0716 REMARK 3 S31: 0.3132 S32: -0.3644 S33: 0.2032 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2560 0.1731 22.1411 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.1709 REMARK 3 T33: 0.2106 T12: -0.0021 REMARK 3 T13: -0.0031 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.2557 L22: 1.7946 REMARK 3 L33: 2.9243 L12: 0.2285 REMARK 3 L13: -0.7328 L23: 0.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.1071 S12: -0.0598 S13: -0.2462 REMARK 3 S21: -0.0925 S22: 0.0385 S23: 0.0597 REMARK 3 S31: 0.2312 S32: -0.2481 S33: 0.0527 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.6307 17.1297 51.1493 REMARK 3 T TENSOR REMARK 3 T11: 0.5303 T22: 1.2835 REMARK 3 T33: 0.5322 T12: 0.0749 REMARK 3 T13: 0.1095 T23: 0.2323 REMARK 3 L TENSOR REMARK 3 L11: 4.3600 L22: 2.2107 REMARK 3 L33: 2.1312 L12: 0.5033 REMARK 3 L13: -2.4174 L23: 1.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: -0.8819 S13: -0.1401 REMARK 3 S21: 0.4937 S22: 0.1705 S23: 0.2216 REMARK 3 S31: -0.0591 S32: -0.5618 S33: -0.1856 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.5509 21.5410 43.6745 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.9629 REMARK 3 T33: 0.4620 T12: 0.1255 REMARK 3 T13: 0.0925 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 3.0518 L22: 1.2301 REMARK 3 L33: 2.4700 L12: -0.0110 REMARK 3 L13: -1.9654 L23: -0.1771 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.7993 S13: -0.0382 REMARK 3 S21: 0.4761 S22: 0.1184 S23: 0.3421 REMARK 3 S31: -0.0925 S32: -0.7437 S33: -0.0529 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6986 19.0590 20.6111 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.2855 REMARK 3 T33: 0.2288 T12: 0.0266 REMARK 3 T13: 0.0000 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 1.6987 L22: 1.5299 REMARK 3 L33: 2.5173 L12: 0.4091 REMARK 3 L13: 0.6745 L23: 0.3485 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0359 S13: 0.0563 REMARK 3 S21: -0.0797 S22: 0.0208 S23: 0.1871 REMARK 3 S31: -0.0620 S32: -0.3952 S33: -0.0211 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 A REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 79.097 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AN1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM TRIS PH 8.5, 0.8 MM AMSO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.12350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.56175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.68525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.12350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.68525 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.56175 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.56175 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 292 REMARK 465 GLY A 293 REMARK 465 GLY A 294 REMARK 465 ASP A 295 REMARK 465 LEU A 296 REMARK 465 GLU A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 HIS B 49 REMARK 465 GLY B 50 REMARK 465 LEU B 51 REMARK 465 GLN B 52 REMARK 465 THR B 53 REMARK 465 CYS B 54 REMARK 465 SER B 55 REMARK 465 ARG B 56 REMARK 465 GLY B 294 REMARK 465 ASP B 295 REMARK 465 LEU B 296 REMARK 465 GLU B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 THR A 16 OG1 CG2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ILE A 42 CG1 CG2 CD1 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 VAL A 45 CG1 CG2 REMARK 470 LEU A 46 CG CD1 CD2 REMARK 470 SER A 55 OG REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ILE A 136 CG1 CG2 CD1 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 291 CG CD1 CD2 REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 HIS B 33 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 38 CG CD1 CD2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 ASP B 40 CG OD1 OD2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 VAL B 45 CG1 CG2 REMARK 470 PRO B 47 CG CD REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ILE B 58 CG1 CG2 CD1 REMARK 470 ASP B 64 CG OD1 OD2 REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 546 O HOH A 570 0.51 REMARK 500 OE2 GLU A 227 NZ LYS A 229 1.49 REMARK 500 O HOH B 586 O HOH B 595 2.11 REMARK 500 CE LYS A 229 O HOH A 542 2.12 REMARK 500 OD1 ASN A 93 OG1 THR A 101 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 17 N GLN B 17 CA -0.249 REMARK 500 GLN B 17 N GLN B 17 CA -0.316 REMARK 500 GLN B 17 CA GLN B 17 C 0.254 REMARK 500 GLN B 17 CA GLN B 17 C 0.324 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 33 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 HIS A 33 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP A 102 CB - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 102 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 LYS A 229 CB - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS A 229 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 LYS A 229 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 LYS A 229 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 GLN B 17 CB - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 GLN B 17 N - CA - C ANGL. DEV. = 40.4 DEGREES REMARK 500 GLN B 17 N - CA - C ANGL. DEV. = 39.6 DEGREES REMARK 500 GLN B 17 CA - C - O ANGL. DEV. = -17.4 DEGREES REMARK 500 GLN B 17 CA - C - O ANGL. DEV. = -14.7 DEGREES REMARK 500 GLN B 17 CA - C - N ANGL. DEV. = -20.9 DEGREES REMARK 500 GLN B 17 CA - C - N ANGL. DEV. = -22.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 188 -119.30 -101.37 REMARK 500 TYR A 211 66.33 35.69 REMARK 500 SER A 289 -161.80 -109.71 REMARK 500 PHE B 4 76.34 -67.20 REMARK 500 THR B 16 -78.86 -69.80 REMARK 500 GLN B 17 -15.79 -29.88 REMARK 500 GLN B 17 -29.64 -15.11 REMARK 500 ASN B 146 -62.68 -93.43 REMARK 500 VAL B 170 -63.18 -98.64 REMARK 500 ALA B 188 -120.46 -101.73 REMARK 500 ASP B 245 28.58 49.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 17 -29.08 REMARK 500 GLN B 17 -27.92 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7QVS A 1 295 UNP A0A071KS55_PSEAI DBREF2 7QVS A A0A071KS55 1 295 DBREF1 7QVS B 1 295 UNP A0A071KS55_PSEAI DBREF2 7QVS B A0A071KS55 1 295 SEQADV 7QVS LEU A 296 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS GLU A 297 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS A 298 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS A 299 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS A 300 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS A 301 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS A 302 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS A 303 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS LEU B 296 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS GLU B 297 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS B 298 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS B 299 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS B 300 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS B 301 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS B 302 UNP A0A071KS5 EXPRESSION TAG SEQADV 7QVS HIS B 303 UNP A0A071KS5 EXPRESSION TAG SEQRES 1 A 303 MET GLU PRO PHE ARG ASN ILE GLY ILE ILE GLY ARG LEU SEQRES 2 A 303 GLY SER THR GLN VAL LEU ASP THR ILE ARG ARG LEU LYS SEQRES 3 A 303 LYS PHE LEU ILE ASP ARG HIS LEU HIS VAL ILE LEU GLU SEQRES 4 A 303 ASP THR ILE ALA GLU VAL LEU PRO GLY HIS GLY LEU GLN SEQRES 5 A 303 THR CYS SER ARG LYS ILE MET GLY GLU ILE CYS ASP LEU SEQRES 6 A 303 VAL VAL VAL VAL GLY GLY ASP GLY SER MET LEU GLY ALA SEQRES 7 A 303 ALA ARG ALA LEU ALA ARG HIS LYS VAL PRO VAL LEU GLY SEQRES 8 A 303 ILE ASN ARG GLY SER LEU GLY PHE LEU THR ASP ILE ARG SEQRES 9 A 303 PRO ASP GLU LEU GLU ALA LYS VAL GLY GLU VAL LEU ASP SEQRES 10 A 303 GLY GLN TYR ILE VAL GLU SER ARG PHE LEU LEU ASP ALA SEQRES 11 A 303 GLN VAL ARG ARG GLY ILE ASP SER MET GLY GLN GLY ASP SEQRES 12 A 303 ALA LEU ASN ASP VAL VAL LEU HIS PRO GLY LYS SER THR SEQRES 13 A 303 ARG MET ILE GLU PHE GLU LEU TYR ILE ASP GLY GLN PHE SEQRES 14 A 303 VAL CYS SER GLN LYS ALA ASP GLY LEU ILE VAL ALA THR SEQRES 15 A 303 PRO THR GLY SER THR ALA TYR ALA LEU SER ALA GLY GLY SEQRES 16 A 303 PRO ILE MET HIS PRO LYS LEU ASP ALA ILE VAL ILE VAL SEQRES 17 A 303 PRO MET TYR PRO HIS MET LEU SER SER ARG PRO ILE VAL SEQRES 18 A 303 VAL ASP GLY ASN SER GLU LEU LYS ILE VAL VAL SER PRO SEQRES 19 A 303 ASN MET GLN ILE TYR PRO GLN VAL SER CYS ASP GLY GLN SEQRES 20 A 303 ASN HIS PHE THR CYS ALA PRO GLY ASP THR VAL THR ILE SEQRES 21 A 303 SER LYS LYS PRO GLN LYS LEU ARG LEU ILE HIS PRO ILE SEQRES 22 A 303 ASP HIS ASN TYR TYR GLU ILE CYS ARG THR LYS LEU GLY SEQRES 23 A 303 TRP GLY SER ARG LEU GLY GLY GLY ASP LEU GLU HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET GLU PRO PHE ARG ASN ILE GLY ILE ILE GLY ARG LEU SEQRES 2 B 303 GLY SER THR GLN VAL LEU ASP THR ILE ARG ARG LEU LYS SEQRES 3 B 303 LYS PHE LEU ILE ASP ARG HIS LEU HIS VAL ILE LEU GLU SEQRES 4 B 303 ASP THR ILE ALA GLU VAL LEU PRO GLY HIS GLY LEU GLN SEQRES 5 B 303 THR CYS SER ARG LYS ILE MET GLY GLU ILE CYS ASP LEU SEQRES 6 B 303 VAL VAL VAL VAL GLY GLY ASP GLY SER MET LEU GLY ALA SEQRES 7 B 303 ALA ARG ALA LEU ALA ARG HIS LYS VAL PRO VAL LEU GLY SEQRES 8 B 303 ILE ASN ARG GLY SER LEU GLY PHE LEU THR ASP ILE ARG SEQRES 9 B 303 PRO ASP GLU LEU GLU ALA LYS VAL GLY GLU VAL LEU ASP SEQRES 10 B 303 GLY GLN TYR ILE VAL GLU SER ARG PHE LEU LEU ASP ALA SEQRES 11 B 303 GLN VAL ARG ARG GLY ILE ASP SER MET GLY GLN GLY ASP SEQRES 12 B 303 ALA LEU ASN ASP VAL VAL LEU HIS PRO GLY LYS SER THR SEQRES 13 B 303 ARG MET ILE GLU PHE GLU LEU TYR ILE ASP GLY GLN PHE SEQRES 14 B 303 VAL CYS SER GLN LYS ALA ASP GLY LEU ILE VAL ALA THR SEQRES 15 B 303 PRO THR GLY SER THR ALA TYR ALA LEU SER ALA GLY GLY SEQRES 16 B 303 PRO ILE MET HIS PRO LYS LEU ASP ALA ILE VAL ILE VAL SEQRES 17 B 303 PRO MET TYR PRO HIS MET LEU SER SER ARG PRO ILE VAL SEQRES 18 B 303 VAL ASP GLY ASN SER GLU LEU LYS ILE VAL VAL SER PRO SEQRES 19 B 303 ASN MET GLN ILE TYR PRO GLN VAL SER CYS ASP GLY GLN SEQRES 20 B 303 ASN HIS PHE THR CYS ALA PRO GLY ASP THR VAL THR ILE SEQRES 21 B 303 SER LYS LYS PRO GLN LYS LEU ARG LEU ILE HIS PRO ILE SEQRES 22 B 303 ASP HIS ASN TYR TYR GLU ILE CYS ARG THR LYS LEU GLY SEQRES 23 B 303 TRP GLY SER ARG LEU GLY GLY GLY ASP LEU GLU HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET PO4 A 401 5 HET NAP A 402 48 HET PO4 B 401 5 HET NAP B 402 96 HETNAM PO4 PHOSPHATE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 7 HOH *221(H2 O) HELIX 1 AA1 SER A 15 ARG A 32 1 18 HELIX 2 AA2 ASP A 40 LEU A 46 1 7 HELIX 3 AA3 SER A 55 CYS A 63 1 9 HELIX 4 AA4 GLY A 70 ALA A 83 1 14 HELIX 5 AA5 ARG A 84 LYS A 86 5 3 HELIX 6 AA6 ARG A 104 ASP A 106 5 3 HELIX 7 AA7 GLU A 107 ASP A 117 1 11 HELIX 8 AA8 PRO A 183 THR A 187 5 5 HELIX 9 AA9 ALA A 188 ALA A 193 1 6 HELIX 10 AB1 ASN A 276 GLY A 286 1 11 HELIX 11 AB2 SER B 15 ASP B 31 1 17 HELIX 12 AB3 ILE B 42 LEU B 46 5 5 HELIX 13 AB4 ILE B 58 CYS B 63 1 6 HELIX 14 AB5 GLY B 71 HIS B 85 1 15 HELIX 15 AB6 ARG B 104 ASP B 106 5 3 HELIX 16 AB7 GLU B 107 GLY B 118 1 12 HELIX 17 AB8 PRO B 183 THR B 187 5 5 HELIX 18 AB9 ALA B 188 ALA B 193 1 6 HELIX 19 AC1 ASN B 276 GLY B 286 1 11 SHEET 1 AA1 5 GLN A 52 CYS A 54 0 SHEET 2 AA1 5 HIS A 35 GLU A 39 1 N LEU A 38 O GLN A 52 SHEET 3 AA1 5 ASN A 6 GLY A 11 1 N ILE A 7 O ILE A 37 SHEET 4 AA1 5 LEU A 65 VAL A 69 1 O VAL A 67 N GLY A 8 SHEET 5 AA1 5 VAL A 89 ILE A 92 1 O LEU A 90 N VAL A 68 SHEET 1 AA2 2 ILE A 121 ARG A 125 0 SHEET 2 AA2 2 LEU A 267 HIS A 271 -1 O LEU A 269 N GLU A 123 SHEET 1 AA3 6 ASP A 137 ALA A 144 0 SHEET 2 AA3 6 LEU A 128 ARG A 134 -1 N LEU A 128 O ALA A 144 SHEET 3 AA3 6 THR A 257 LYS A 262 -1 O THR A 259 N GLN A 131 SHEET 4 AA3 6 LEU A 228 VAL A 232 -1 N LEU A 228 O ILE A 260 SHEET 5 AA3 6 ILE A 159 ILE A 165 -1 N TYR A 164 O LYS A 229 SHEET 6 AA3 6 GLN A 168 ALA A 175 -1 O VAL A 170 N LEU A 163 SHEET 1 AA4 6 ILE A 220 ASP A 223 0 SHEET 2 AA4 6 ALA A 204 MET A 210 -1 N ILE A 205 O VAL A 222 SHEET 3 AA4 6 GLY A 177 ALA A 181 -1 N ILE A 179 O VAL A 208 SHEET 4 AA4 6 ASP A 147 HIS A 151 -1 N VAL A 148 O VAL A 180 SHEET 5 AA4 6 GLN A 241 CYS A 244 -1 O GLN A 241 N HIS A 151 SHEET 6 AA4 6 ASN A 248 THR A 251 -1 O ASN A 248 N CYS A 244 SHEET 1 AA5 6 HIS B 35 LEU B 38 0 SHEET 2 AA5 6 ASN B 6 GLY B 11 1 N ILE B 7 O HIS B 35 SHEET 3 AA5 6 LEU B 65 VAL B 69 1 O VAL B 67 N GLY B 8 SHEET 4 AA5 6 VAL B 89 ILE B 92 1 O LEU B 90 N VAL B 68 SHEET 5 AA5 6 LEU B 267 PRO B 272 1 O ILE B 270 N VAL B 89 SHEET 6 AA5 6 TYR B 120 ARG B 125 -1 N ARG B 125 O LEU B 267 SHEET 1 AA6 6 ASP B 137 ALA B 144 0 SHEET 2 AA6 6 LEU B 128 ARG B 134 -1 N VAL B 132 O MET B 139 SHEET 3 AA6 6 THR B 257 LYS B 262 -1 O SER B 261 N ASP B 129 SHEET 4 AA6 6 LEU B 228 VAL B 232 -1 N LEU B 228 O ILE B 260 SHEET 5 AA6 6 ILE B 159 ILE B 165 -1 N TYR B 164 O LYS B 229 SHEET 6 AA6 6 GLN B 168 ALA B 175 -1 O VAL B 170 N LEU B 163 SHEET 1 AA7 6 ILE B 220 ASP B 223 0 SHEET 2 AA7 6 ALA B 204 MET B 210 -1 N ILE B 205 O VAL B 222 SHEET 3 AA7 6 GLY B 177 ALA B 181 -1 N ILE B 179 O VAL B 208 SHEET 4 AA7 6 ASP B 147 HIS B 151 -1 N VAL B 148 O VAL B 180 SHEET 5 AA7 6 GLN B 241 CYS B 244 -1 O GLN B 241 N HIS B 151 SHEET 6 AA7 6 ASN B 248 THR B 251 -1 O ASN B 248 N CYS B 244 CRYST1 88.770 88.770 174.247 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005739 0.00000