HEADER TRANSFERASE 24-JAN-22 7QW7 TITLE ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.BSECI COMPLEXED WITH ADOHCY TITLE 2 AND COGNATE FULLY METHYLATED DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MODIFICATION METHYLASE BSECI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M.BSECI,ADENINE-SPECIFIC METHYLTRANSFERASE BSECI; COMPND 5 EC: 2.1.1.72; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FULLY METHYLATED DNA DUPLEX; COMPND 9 CHAIN: Z; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FULLY METHYLATED DNA DUPLEX; COMPND 13 CHAIN: Y; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: BSECIM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 10 ORGANISM_TAXID: 1422; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 14 ORGANISM_TAXID: 1422 KEYWDS METHYLTRANSFERASE, DNA-MODIFICATION, ADENINE-N6 METHYLATION, BASE KEYWDS 2 FLIPPING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.MITSIKAS,K.KOUYIANOU,D.KOTSIFAKI,M.PROVIDAKI,V.BOURIOTIS, AUTHOR 2 N.M.GLYKOS,M.KOKKINIDIS REVDAT 2 31-JAN-24 7QW7 1 REMARK REVDAT 1 25-JAN-23 7QW7 0 JRNL AUTH D.A.MITSIKAS,K.KOUYIANOU,D.KOTSIFAKI,M.PROVIDAKI, JRNL AUTH 2 V.BOURIOTIS,N.M.GLYKOS,M.KOKKINIDIS JRNL TITL STRUCTURE OF M.BSECI DNA METHYLTRANSFERASE FROM GEOBACILLUS JRNL TITL 2 STEAROTHERMOPHILUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 19650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0100 - 4.9700 1.00 2872 144 0.1600 0.1868 REMARK 3 2 4.9700 - 3.9500 1.00 2834 153 0.1571 0.1656 REMARK 3 3 3.9500 - 3.4700 0.85 2280 118 0.1931 0.1914 REMARK 3 4 3.4400 - 3.1300 0.99 2724 146 0.2567 0.2903 REMARK 3 5 3.1300 - 2.9100 0.99 2827 145 0.2833 0.3110 REMARK 3 6 2.9100 - 2.7400 0.99 2799 146 0.3197 0.3440 REMARK 3 7 2.7400 - 2.6000 0.82 2341 121 0.4078 0.4554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 40.90 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.486 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5048 REMARK 3 ANGLE : 0.894 6902 REMARK 3 CHIRALITY : 0.053 755 REMARK 3 PLANARITY : 0.004 814 REMARK 3 DIHEDRAL : 14.553 1920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'Z' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2648 57.5172 14.0518 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.4234 REMARK 3 T33: 0.2574 T12: -0.0232 REMARK 3 T13: 0.0301 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.3451 L22: 1.9091 REMARK 3 L33: 3.6679 L12: 0.1575 REMARK 3 L13: 0.9804 L23: 0.5119 REMARK 3 S TENSOR REMARK 3 S11: 0.2155 S12: -0.6759 S13: -0.1566 REMARK 3 S21: -0.1336 S22: -0.3543 S23: 0.1980 REMARK 3 S31: -0.2834 S32: -1.0146 S33: 0.2984 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5101 56.9468 16.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.5466 T22: 0.6164 REMARK 3 T33: 0.3716 T12: -0.1289 REMARK 3 T13: -0.0172 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 0.2092 L22: 3.1749 REMARK 3 L33: 1.4419 L12: -0.5026 REMARK 3 L13: -0.3937 L23: -0.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: 0.1888 S13: -0.3698 REMARK 3 S21: 0.7894 S22: 0.2396 S23: 0.2859 REMARK 3 S31: -0.2694 S32: 0.2606 S33: 0.9432 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.7703 75.7722 2.6744 REMARK 3 T TENSOR REMARK 3 T11: 0.6421 T22: 0.5570 REMARK 3 T33: 0.5861 T12: -0.0169 REMARK 3 T13: 0.0030 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.8966 L22: 2.9181 REMARK 3 L33: 2.0614 L12: 0.8193 REMARK 3 L13: -0.5448 L23: 0.1632 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.0125 S13: 0.1687 REMARK 3 S21: -0.0715 S22: 0.0482 S23: 0.0924 REMARK 3 S31: -0.3033 S32: -0.0835 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.7892 57.7992 6.0367 REMARK 3 T TENSOR REMARK 3 T11: 0.5790 T22: 0.5423 REMARK 3 T33: 0.6342 T12: 0.0321 REMARK 3 T13: 0.0028 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 1.9603 L22: 2.7280 REMARK 3 L33: 2.0075 L12: -0.0072 REMARK 3 L13: 0.4294 L23: -0.4837 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: -0.0908 S13: -0.2559 REMARK 3 S21: 0.0702 S22: 0.1526 S23: -0.4383 REMARK 3 S31: 0.1484 S32: 0.3179 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0993 43.2967 16.9333 REMARK 3 T TENSOR REMARK 3 T11: 0.6164 T22: 0.5292 REMARK 3 T33: 0.5033 T12: -0.1087 REMARK 3 T13: 0.0313 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.3185 L22: 1.9184 REMARK 3 L33: 1.4395 L12: 0.0735 REMARK 3 L13: -0.2333 L23: 0.1921 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: -0.2992 S13: -0.0499 REMARK 3 S21: 0.2350 S22: -0.1114 S23: 0.1435 REMARK 3 S31: 0.4122 S32: -0.1788 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 535 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.1428 25.4910 18.6377 REMARK 3 T TENSOR REMARK 3 T11: 1.0681 T22: 0.5490 REMARK 3 T33: 0.7490 T12: -0.0350 REMARK 3 T13: -0.0227 T23: 0.1585 REMARK 3 L TENSOR REMARK 3 L11: 0.4904 L22: 0.4131 REMARK 3 L33: 0.3794 L12: -0.3568 REMARK 3 L13: 0.1280 L23: -0.3172 REMARK 3 S TENSOR REMARK 3 S11: 0.1447 S12: -0.1159 S13: -0.3480 REMARK 3 S21: 0.4188 S22: -0.3684 S23: -0.0978 REMARK 3 S31: 0.7599 S32: 0.0390 S33: -0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 2.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7QW5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCEROL ETHOXYLATE, TRIS-HCL, PH 9.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.82700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.65400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.74050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 129.56750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.91350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 VAL A 110 REMARK 465 SER A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 ASP A 114 REMARK 465 ASN A 115 REMARK 465 TYR A 116 REMARK 465 ASP A 117 REMARK 465 LEU A 118 REMARK 465 PHE A 119 REMARK 465 ASN A 120 REMARK 465 ILE A 121 REMARK 465 LYS A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 LEU A 577 REMARK 465 LYS A 578 REMARK 465 TYR A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CE NZ REMARK 470 MET A 109 CG SD CE REMARK 470 GLU A 125 CD OE1 OE2 REMARK 470 GLU A 236 OE1 OE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LEU A 380 CG CD1 CD2 REMARK 470 VAL A 381 CG1 CG2 REMARK 470 ASP A 395 CG OD1 OD2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 ASN A 485 CG OD1 ND2 REMARK 470 ASP A 573 CG OD1 OD2 REMARK 470 DG Z 1 O5' C5' REMARK 470 DC Y 11 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 40 -68.70 78.34 REMARK 500 ARG A 159 89.52 -66.10 REMARK 500 ASP A 215 38.98 -93.78 REMARK 500 ASN A 234 -147.39 -110.83 REMARK 500 TYR A 237 140.43 75.14 REMARK 500 GLU A 284 -110.22 55.21 REMARK 500 ALA A 341 62.17 -167.10 REMARK 500 GLN A 372 56.85 -93.44 REMARK 500 TRP A 376 -63.39 65.30 REMARK 500 LEU A 380 176.44 58.63 REMARK 500 VAL A 381 17.56 -145.11 REMARK 500 ASN A 383 -35.20 58.98 REMARK 500 ASN A 384 -9.18 67.17 REMARK 500 ARG A 394 -93.63 -88.11 REMARK 500 LYS A 417 -38.14 -39.97 REMARK 500 HIS A 440 -153.09 62.75 REMARK 500 ASP A 454 -73.73 -70.02 REMARK 500 GLU A 482 37.64 -71.11 REMARK 500 ASN A 549 -73.94 -73.13 REMARK 500 THR A 554 -98.84 -119.84 REMARK 500 PHE A 572 -97.54 -91.90 REMARK 500 GLU A 575 -168.06 71.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 6.36 ANGSTROMS DBREF 7QW7 A 1 579 UNP P43423 MTC1_GEOSE 1 579 DBREF 7QW7 Z 1 10 PDB 7QW7 7QW7 1 10 DBREF 7QW7 Y 11 20 PDB 7QW7 7QW7 11 20 SEQADV 7QW7 GLU A 195 UNP P43423 GLY 195 CONFLICT SEQADV 7QW7 HIS A 580 UNP P43423 EXPRESSION TAG SEQADV 7QW7 HIS A 581 UNP P43423 EXPRESSION TAG SEQADV 7QW7 HIS A 582 UNP P43423 EXPRESSION TAG SEQADV 7QW7 HIS A 583 UNP P43423 EXPRESSION TAG SEQADV 7QW7 HIS A 584 UNP P43423 EXPRESSION TAG SEQADV 7QW7 HIS A 585 UNP P43423 EXPRESSION TAG SEQRES 1 A 585 MET MET SER VAL GLN LYS ALA ASN THR VAL SER ARG GLN SEQRES 2 A 585 LYS ALA THR GLY ALA HIS PHE THR PRO ASP LYS LEU ALA SEQRES 3 A 585 GLU VAL ILE ALA LYS ARG ILE LEU ASP TYR PHE LYS GLY SEQRES 4 A 585 GLU LYS ASN ARG VAL ILE ARG VAL LEU ASP PRO ALA CYS SEQRES 5 A 585 GLY ASP GLY GLU LEU LEU LEU ALA ILE ASN LYS VAL ALA SEQRES 6 A 585 GLN SER MET ASN ILE GLN LEU GLU LEU ILE GLY VAL ASP SEQRES 7 A 585 PHE ASP ILE ASP ALA ILE ASN ILE ALA ASN GLU ARG LEU SEQRES 8 A 585 SER ARG SER GLY HIS LYS ASN PHE ARG LEU ILE ASN LYS SEQRES 9 A 585 ASP PHE LEU GLU MET VAL SER GLU GLY ASP ASN TYR ASP SEQRES 10 A 585 LEU PHE ASN ILE GLU GLU LEU GLU PRO VAL ASP ILE ILE SEQRES 11 A 585 ILE ALA ASN PRO PRO TYR VAL ARG THR GLN ILE LEU GLY SEQRES 12 A 585 ALA GLU LYS ALA GLN LYS LEU ARG GLU LYS PHE ASN LEU SEQRES 13 A 585 LYS GLY ARG VAL ASP LEU TYR GLN ALA PHE LEU VAL ALA SEQRES 14 A 585 MET THR GLN GLN LEU LYS SER ASN GLY ILE ILE GLY VAL SEQRES 15 A 585 ILE THR SER ASN ARG TYR LEU THR THR LYS GLY GLY GLU SEQRES 16 A 585 SER THR ARG LYS PHE LEU VAL SER ASN PHE ASN ILE LEU SEQRES 17 A 585 GLU ILE MET ASP LEU GLY ASP SER LYS PHE PHE GLU ALA SEQRES 18 A 585 ALA VAL LEU PRO ALA ILE PHE PHE GLY GLU LYS LYS ASN SEQRES 19 A 585 LYS GLU TYR GLN LYS GLU ASN SER ASN VAL PRO LYS PHE SEQRES 20 A 585 PHE LYS ILE TYR GLU GLN SER ASP ILE GLU ALA SER SER SEQRES 21 A 585 SER VAL ASN SER GLU PHE ASN SER LEU ILE GLU LEU LEU SEQRES 22 A 585 GLU VAL ASN LYS SER GLY LEU TYR SER VAL GLU ASP LYS SEQRES 23 A 585 THR TYR SER ILE SER LEU GLY LYS ILE ILE SER PRO GLU SEQRES 24 A 585 ASN TYR LYS GLU PRO TRP ILE LEU ALA THR GLU ASP GLU SEQRES 25 A 585 TYR GLU TRP PHE MET LYS VAL ASN GLN ASN ALA TYR GLY SEQRES 26 A 585 PHE ILE GLU ASP PHE ALA HIS VAL LYS VAL GLY ILE LYS SEQRES 27 A 585 THR THR ALA ASP SER VAL PHE ILE ARG SER ASP TRP GLY SEQRES 28 A 585 GLU LEU PRO GLU GLU GLN ILE PRO GLU ASP LYS LEU LEU SEQRES 29 A 585 ARG PRO ILE ILE SER ALA ASP GLN ALA ASN LYS TRP SER SEQRES 30 A 585 VAL SER LEU VAL GLY ASN ASN LYS LYS VAL LEU TYR THR SEQRES 31 A 585 HIS GLU ILE ARG ASP GLY GLN ILE LYS ALA ILE ASN LEU SEQRES 32 A 585 GLU GLU PHE PRO ARG ALA LYS ASN TYR LEU GLU SER HIS SEQRES 33 A 585 LYS GLU ARG LEU ALA SER ARG LYS TYR VAL LEU LYS ALA SEQRES 34 A 585 ASN ARG ASN TRP TYR GLU ILE TRP VAL PRO HIS ASP PRO SEQRES 35 A 585 SER LEU TRP ASP LYS PRO LYS ILE ILE PHE PRO ASP THR SEQRES 36 A 585 SER PRO GLU PRO LYS PHE PHE TYR GLU ASP LYS GLY SER SEQRES 37 A 585 VAL VAL ASP GLY ASN CYS TYR TRP ILE ILE PRO LYS LYS SEQRES 38 A 585 GLU ASN SER ASN ASP ILE LEU PHE LEU ILE MET GLY ILE SEQRES 39 A 585 CYS ASN SER LYS PHE MET SER LYS TYR HIS ASP ILE ALA SEQRES 40 A 585 PHE GLN ASN LYS LEU TYR ALA GLY ARG ARG ARG TYR LEU SEQRES 41 A 585 THR GLN TYR VAL ASN LYS TYR PRO ILE PRO ASP PRO GLU SEQRES 42 A 585 SER ILE TYR SER LYS GLU ILE ILE SER LEU VAL ARG GLU SEQRES 43 A 585 LEU VAL ASN ASN LYS LYS GLU THR GLN ASP ILE ASN GLU SEQRES 44 A 585 ILE GLU ASN ARG ILE GLU LYS LEU ILE LEU ARG ALA PHE SEQRES 45 A 585 ASP ILE GLU SER LEU LYS TYR HIS HIS HIS HIS HIS HIS SEQRES 1 Z 10 DG DC DA DT DC DG 6MA DT DC DG SEQRES 1 Y 10 DC DG DA DT DC DG 6MA DT DG DC HET 6MA Z 7 22 HET 6MA Y 17 22 HET SAH A 601 26 HETNAM 6MA N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 6MA 2(C11 H16 N5 O6 P) FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 HOH *47(H2 O) HELIX 1 AA1 SER A 11 GLY A 17 1 7 HELIX 2 AA2 PRO A 22 PHE A 37 1 16 HELIX 3 AA3 GLY A 55 MET A 68 1 14 HELIX 4 AA4 ASP A 80 SER A 94 1 15 HELIX 5 AA5 ARG A 138 GLY A 143 1 6 HELIX 6 AA6 GLY A 143 ASN A 155 1 13 HELIX 7 AA7 ASP A 161 GLN A 173 1 13 HELIX 8 AA8 ARG A 187 THR A 190 5 4 HELIX 9 AA9 GLY A 194 ASN A 204 1 11 HELIX 10 AB1 SER A 268 VAL A 275 5 8 HELIX 11 AB2 THR A 309 ASN A 322 1 14 HELIX 12 AB3 ILE A 327 PHE A 330 1 4 HELIX 13 AB4 ALA A 341 PHE A 345 1 5 HELIX 14 AB5 PHE A 406 HIS A 416 1 11 HELIX 15 AB6 HIS A 416 SER A 422 1 7 HELIX 16 AB7 ARG A 423 ALA A 429 1 7 HELIX 17 AB8 SER A 443 LYS A 447 5 5 HELIX 18 AB9 ASP A 486 ASN A 496 1 11 HELIX 19 AC1 SER A 497 PHE A 508 1 12 HELIX 20 AC2 LEU A 512 ARG A 516 5 5 HELIX 21 AC3 LEU A 520 ASN A 525 1 6 HELIX 22 AC4 SER A 534 ASN A 550 1 17 HELIX 23 AC5 GLN A 555 PHE A 572 1 18 SHEET 1 AA111 PHE A 99 ILE A 102 0 SHEET 2 AA111 LEU A 72 VAL A 77 1 N GLY A 76 O ARG A 100 SHEET 3 AA111 ILE A 45 ASP A 49 1 N VAL A 47 O GLU A 73 SHEET 4 AA111 VAL A 127 ALA A 132 1 O ILE A 129 N LEU A 48 SHEET 5 AA111 LEU A 174 SER A 185 1 O GLY A 181 N ILE A 130 SHEET 6 AA111 PRO A 225 LYS A 232 -1 O ALA A 226 N THR A 184 SHEET 7 AA111 PHE A 205 ASP A 212 -1 N ASN A 206 O GLU A 231 SHEET 8 AA111 LYS A 246 GLU A 252 1 O PHE A 248 N ASP A 212 SHEET 9 AA111 LYS A 286 LYS A 294 -1 O SER A 291 N LYS A 249 SHEET 10 AA111 GLY A 279 VAL A 283 -1 N TYR A 281 O TYR A 288 SHEET 11 AA111 VAL A 262 ASN A 263 1 N ASN A 263 O SER A 282 SHEET 1 AA2 2 GLY A 325 PHE A 326 0 SHEET 2 AA2 2 PRO A 528 ILE A 529 -1 O ILE A 529 N GLY A 325 SHEET 1 AA3 4 ALA A 331 VAL A 335 0 SHEET 2 AA3 4 CYS A 474 PRO A 479 -1 O TRP A 476 N LYS A 334 SHEET 3 AA3 4 LYS A 449 PRO A 453 -1 N PHE A 452 O TYR A 475 SHEET 4 AA3 4 PHE A 462 GLU A 464 -1 O GLU A 464 N LYS A 449 SHEET 1 AA4 4 ILE A 346 ARG A 347 0 SHEET 2 AA4 4 LYS A 386 LEU A 388 -1 O LYS A 386 N ARG A 347 SHEET 3 AA4 4 LEU A 364 ILE A 368 -1 N ARG A 365 O VAL A 387 SHEET 4 AA4 4 VAL A 469 VAL A 470 1 O VAL A 469 N PRO A 366 SHEET 1 AA5 2 HIS A 391 ILE A 393 0 SHEET 2 AA5 2 ILE A 398 ALA A 400 -1 O LYS A 399 N GLU A 392 SHEET 1 AA6 2 THR A 455 SER A 456 0 SHEET 2 AA6 2 ARG A 517 ARG A 518 -1 O ARG A 517 N SER A 456 LINK O3' DG Z 6 P 6MA Z 7 1555 1555 1.60 LINK O3' 6MA Z 7 P DT Z 8 1555 1555 1.61 LINK O3' DG Y 16 P 6MA Y 17 1555 1555 1.60 LINK O3' 6MA Y 17 P DT Y 18 1555 1555 1.61 CRYST1 88.010 88.010 155.481 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011362 0.006560 0.000000 0.00000 SCALE2 0.000000 0.013120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006432 0.00000