HEADER HYDROLASE 30-JAN-22 7QZ3 TITLE THE STRUCTURE OF T. FORSYTHIA NANH COMPND MOL_ID: 1; COMPND 2 MOLECULE: BNR/ASP-BOX REPEAT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA; SOURCE 3 ORGANISM_TAXID: 28112; SOURCE 4 STRAIN: ATCC 43037 / JCM 10827 / CCUG 33226 / KCTC 5666 / FDC 338; SOURCE 5 GENE: BFO_2207; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIALIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.RAFFERTY,G.STAFFORD,M.SATUR REVDAT 2 31-JAN-24 7QZ3 1 REMARK REVDAT 1 07-DEC-22 7QZ3 0 JRNL AUTH M.J.SATUR,P.A.URBANOWICZ,D.I.R.SPENCER,J.RAFFERTY, JRNL AUTH 2 G.P.STAFFORD JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF A STABLE, JRNL TITL 2 BROAD-SPECIFICITY MULTIMERIC SIALIDASE FROM THE ORAL JRNL TITL 3 PATHOGEN TANNERELLA FORSYTHIA. JRNL REF BIOCHEM.J. V. 479 1785 2022 JRNL REFN ESSN 1470-8728 JRNL PMID 35916484 JRNL DOI 10.1042/BCJ20220244 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 80615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.837 REMARK 3 FREE R VALUE TEST SET COUNT : 3899 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 292 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.00500 REMARK 3 B22 (A**2) : 2.00500 REMARK 3 B33 (A**2) : -4.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8239 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7791 ; 0.001 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11190 ; 1.350 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17905 ; 1.170 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1038 ; 8.111 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 435 ;32.344 ;21.264 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1397 ;12.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 72 ;13.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1113 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9340 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1912 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1416 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 20 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3894 ; 0.147 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 494 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4155 ; 1.190 ; 2.959 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4154 ; 1.190 ; 2.958 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5192 ; 1.746 ; 4.433 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5193 ; 1.746 ; 4.434 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4084 ; 1.219 ; 3.096 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4082 ; 1.215 ; 3.096 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5998 ; 1.879 ; 4.596 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5999 ; 1.879 ; 4.597 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 552 NULL REMARK 3 2 B 34 B 552 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 552 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8254 15.9996 34.3176 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0563 REMARK 3 T33: 0.0389 T12: -0.0074 REMARK 3 T13: -0.0038 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.9194 L22: 1.2225 REMARK 3 L33: 1.3720 L12: -0.1442 REMARK 3 L13: 0.0656 L23: 0.6583 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.1541 S13: 0.1353 REMARK 3 S21: 0.2008 S22: 0.0162 S23: 0.0398 REMARK 3 S31: -0.0157 S32: 0.1586 S33: 0.0736 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 552 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9481 -17.2218 13.2988 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.1511 REMARK 3 T33: 0.0986 T12: 0.1145 REMARK 3 T13: -0.0115 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 1.2507 L22: 0.8841 REMARK 3 L33: 0.6580 L12: -0.0184 REMARK 3 L13: -0.3509 L23: 0.1859 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.0128 S13: -0.1332 REMARK 3 S21: 0.1315 S22: -0.0370 S23: -0.1348 REMARK 3 S31: 0.2579 S32: 0.2607 S33: 0.0253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7QZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 77.863 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.810 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BBW REMARK 200 REMARK 200 REMARK: BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG6000 0.1M HEPES, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 174.75000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.87000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.37500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 262.12500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.37500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 262.12500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 174.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 435 H GLY A 439 1.21 REMARK 500 HH12 ARG A 487 HOS3 EPE A 601 1.21 REMARK 500 HG1 THR B 435 H GLY B 439 1.22 REMARK 500 HG SER A 460 H LEU A 521 1.23 REMARK 500 HG SER B 460 H LEU B 521 1.24 REMARK 500 HH12 ARG B 487 HOS3 EPE B 601 1.25 REMARK 500 H GLU B 287 HG1 THR B 362 1.29 REMARK 500 H GLU A 287 HG1 THR A 362 1.30 REMARK 500 HG1 THR B 223 OD2 ASP B 331 1.49 REMARK 500 HG1 THR A 223 OD2 ASP A 331 1.51 REMARK 500 HG1 THR B 108 O HOH B 702 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 117 106.23 -168.28 REMARK 500 ILE A 213 76.57 69.88 REMARK 500 ASN A 234 -163.25 -178.81 REMARK 500 GLU A 240 -179.90 -170.09 REMARK 500 GLU A 267 40.98 -109.31 REMARK 500 ASN A 276 26.86 -146.83 REMARK 500 MET A 315 -32.41 -140.89 REMARK 500 HIS A 398 -109.76 -102.03 REMARK 500 THR A 406 -98.98 -131.03 REMARK 500 SER A 450 -61.07 -156.34 REMARK 500 ILE A 456 84.20 74.70 REMARK 500 HIS A 506 44.62 -92.54 REMARK 500 ALA A 538 147.72 -171.41 REMARK 500 ASN B 117 106.76 -169.15 REMARK 500 ILE B 213 75.85 70.75 REMARK 500 ASN B 234 -162.74 -178.88 REMARK 500 ASN B 276 27.10 -147.44 REMARK 500 MET B 315 -32.12 -139.92 REMARK 500 HIS B 398 -111.92 -101.61 REMARK 500 THR B 406 -100.81 -133.10 REMARK 500 SER B 450 -60.97 -157.15 REMARK 500 ILE B 456 84.15 75.09 REMARK 500 HIS B 506 46.46 -94.83 REMARK 500 ALA B 538 148.01 -173.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 475 LEU A 476 149.26 REMARK 500 GLY B 100 ARG B 101 -148.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QZ3 A 34 552 UNP G8UIQ1 G8UIQ1_TANFA 21 539 DBREF 7QZ3 B 34 552 UNP G8UIQ1 G8UIQ1_TANFA 21 539 SEQRES 1 A 519 ASP SER VAL TYR VAL GLN ASN PRO GLN ILE PRO ILE LEU SEQRES 2 A 519 VAL ASP ARG THR ASP ASN VAL LEU PHE ARG ILE ARG ILE SEQRES 3 A 519 PRO ASP ALA THR LYS GLY ASP VAL LEU ASN ARG LEU THR SEQRES 4 A 519 ILE ARG PHE GLY ASN GLU ASP LYS LEU SER GLU VAL LYS SEQRES 5 A 519 ALA VAL ARG LEU PHE TYR ALA GLY THR GLU ALA ALA THR SEQRES 6 A 519 LYS GLY ARG SER ARG PHE ALA PRO VAL THR TYR VAL SER SEQRES 7 A 519 SER HIS ASN ILE ARG ASN THR ARG SER ALA ASN PRO SER SEQRES 8 A 519 TYR SER ILE ARG GLN ASP GLU VAL THR THR VAL ALA ASN SEQRES 9 A 519 THR LEU THR LEU LYS THR ARG GLN PRO MET VAL LYS GLY SEQRES 10 A 519 ILE ASN TYR PHE TRP VAL SER VAL GLU MET ASP ARG ASN SEQRES 11 A 519 THR SER LEU LEU SER LYS LEU THR SER THR VAL THR GLU SEQRES 12 A 519 VAL VAL ILE ASN ASP LYS PRO ALA VAL ILE ALA GLY GLU SEQRES 13 A 519 GLN ALA ALA VAL ARG ARG MET GLY ILE GLY VAL ARG HIS SEQRES 14 A 519 ALA GLY ASP ASP GLY SER ALA SER PHE ARG ILE PRO GLY SEQRES 15 A 519 LEU VAL THR THR ASN LYS GLY THR LEU LEU GLY VAL TYR SEQRES 16 A 519 ASP VAL ARG TYR ASN ASN SER VAL ASP LEU GLN GLU HIS SEQRES 17 A 519 ILE ASP VAL GLY LEU SER ARG SER THR ASP LYS GLY GLN SEQRES 18 A 519 THR TRP GLU PRO MET ARG ILE ALA MET SER PHE GLY GLU SEQRES 19 A 519 THR ASP GLY LEU PRO SER GLY GLN ASN GLY VAL GLY ASP SEQRES 20 A 519 PRO SER ILE LEU VAL ASP GLU ARG THR ASN THR VAL TRP SEQRES 21 A 519 VAL VAL ALA ALA TRP THR HIS GLY MET GLY ASN ALA ARG SEQRES 22 A 519 ALA TRP THR ASN SER MET PRO GLY MET THR PRO ASP GLU SEQRES 23 A 519 THR ALA GLN LEU MET MET VAL LYS SER THR ASP ASP GLY SEQRES 24 A 519 ARG THR TRP SER GLU SER THR ASN ILE THR SER GLN VAL SEQRES 25 A 519 LYS ASP PRO SER TRP CYS PHE LEU LEU GLN GLY PRO GLY SEQRES 26 A 519 ARG GLY ILE THR MET ARG ASP GLY THR LEU VAL PHE PRO SEQRES 27 A 519 ILE GLN PHE ILE ASP SER LEU ARG VAL PRO HIS ALA GLY SEQRES 28 A 519 ILE MET TYR SER LYS ASP ARG GLY GLU THR TRP HIS ILE SEQRES 29 A 519 HIS GLN PRO ALA ARG THR ASN THR THR GLU ALA GLN VAL SEQRES 30 A 519 ALA GLU VAL GLU PRO GLY VAL LEU MET LEU ASN MET ARG SEQRES 31 A 519 ASP ASN ARG GLY GLY SER ARG ALA VAL SER ILE THR ARG SEQRES 32 A 519 ASP LEU GLY LYS SER TRP THR GLU HIS SER SER ASN ARG SEQRES 33 A 519 SER ALA LEU PRO GLU SER ILE CYS MET ALA SER LEU ILE SEQRES 34 A 519 SER VAL LYS ALA LYS ASP ASN ILE ILE GLY LYS ASP LEU SEQRES 35 A 519 LEU LEU PHE SER ASN PRO ASN THR THR GLU GLY ARG HIS SEQRES 36 A 519 HIS ILE THR ILE LYS ALA SER LEU ASP GLY GLY VAL THR SEQRES 37 A 519 TRP LEU PRO ALA HIS GLN VAL LEU LEU ASP GLU GLU ASP SEQRES 38 A 519 GLY TRP GLY TYR SER CYS LEU SER MET ILE ASP ARG GLU SEQRES 39 A 519 THR VAL GLY ILE PHE TYR GLU SER SER VAL ALA HIS MET SEQRES 40 A 519 THR PHE GLN ALA VAL LYS ILE LYS ASP LEU ILE ARG SEQRES 1 B 519 ASP SER VAL TYR VAL GLN ASN PRO GLN ILE PRO ILE LEU SEQRES 2 B 519 VAL ASP ARG THR ASP ASN VAL LEU PHE ARG ILE ARG ILE SEQRES 3 B 519 PRO ASP ALA THR LYS GLY ASP VAL LEU ASN ARG LEU THR SEQRES 4 B 519 ILE ARG PHE GLY ASN GLU ASP LYS LEU SER GLU VAL LYS SEQRES 5 B 519 ALA VAL ARG LEU PHE TYR ALA GLY THR GLU ALA ALA THR SEQRES 6 B 519 LYS GLY ARG SER ARG PHE ALA PRO VAL THR TYR VAL SER SEQRES 7 B 519 SER HIS ASN ILE ARG ASN THR ARG SER ALA ASN PRO SER SEQRES 8 B 519 TYR SER ILE ARG GLN ASP GLU VAL THR THR VAL ALA ASN SEQRES 9 B 519 THR LEU THR LEU LYS THR ARG GLN PRO MET VAL LYS GLY SEQRES 10 B 519 ILE ASN TYR PHE TRP VAL SER VAL GLU MET ASP ARG ASN SEQRES 11 B 519 THR SER LEU LEU SER LYS LEU THR SER THR VAL THR GLU SEQRES 12 B 519 VAL VAL ILE ASN ASP LYS PRO ALA VAL ILE ALA GLY GLU SEQRES 13 B 519 GLN ALA ALA VAL ARG ARG MET GLY ILE GLY VAL ARG HIS SEQRES 14 B 519 ALA GLY ASP ASP GLY SER ALA SER PHE ARG ILE PRO GLY SEQRES 15 B 519 LEU VAL THR THR ASN LYS GLY THR LEU LEU GLY VAL TYR SEQRES 16 B 519 ASP VAL ARG TYR ASN ASN SER VAL ASP LEU GLN GLU HIS SEQRES 17 B 519 ILE ASP VAL GLY LEU SER ARG SER THR ASP LYS GLY GLN SEQRES 18 B 519 THR TRP GLU PRO MET ARG ILE ALA MET SER PHE GLY GLU SEQRES 19 B 519 THR ASP GLY LEU PRO SER GLY GLN ASN GLY VAL GLY ASP SEQRES 20 B 519 PRO SER ILE LEU VAL ASP GLU ARG THR ASN THR VAL TRP SEQRES 21 B 519 VAL VAL ALA ALA TRP THR HIS GLY MET GLY ASN ALA ARG SEQRES 22 B 519 ALA TRP THR ASN SER MET PRO GLY MET THR PRO ASP GLU SEQRES 23 B 519 THR ALA GLN LEU MET MET VAL LYS SER THR ASP ASP GLY SEQRES 24 B 519 ARG THR TRP SER GLU SER THR ASN ILE THR SER GLN VAL SEQRES 25 B 519 LYS ASP PRO SER TRP CYS PHE LEU LEU GLN GLY PRO GLY SEQRES 26 B 519 ARG GLY ILE THR MET ARG ASP GLY THR LEU VAL PHE PRO SEQRES 27 B 519 ILE GLN PHE ILE ASP SER LEU ARG VAL PRO HIS ALA GLY SEQRES 28 B 519 ILE MET TYR SER LYS ASP ARG GLY GLU THR TRP HIS ILE SEQRES 29 B 519 HIS GLN PRO ALA ARG THR ASN THR THR GLU ALA GLN VAL SEQRES 30 B 519 ALA GLU VAL GLU PRO GLY VAL LEU MET LEU ASN MET ARG SEQRES 31 B 519 ASP ASN ARG GLY GLY SER ARG ALA VAL SER ILE THR ARG SEQRES 32 B 519 ASP LEU GLY LYS SER TRP THR GLU HIS SER SER ASN ARG SEQRES 33 B 519 SER ALA LEU PRO GLU SER ILE CYS MET ALA SER LEU ILE SEQRES 34 B 519 SER VAL LYS ALA LYS ASP ASN ILE ILE GLY LYS ASP LEU SEQRES 35 B 519 LEU LEU PHE SER ASN PRO ASN THR THR GLU GLY ARG HIS SEQRES 36 B 519 HIS ILE THR ILE LYS ALA SER LEU ASP GLY GLY VAL THR SEQRES 37 B 519 TRP LEU PRO ALA HIS GLN VAL LEU LEU ASP GLU GLU ASP SEQRES 38 B 519 GLY TRP GLY TYR SER CYS LEU SER MET ILE ASP ARG GLU SEQRES 39 B 519 THR VAL GLY ILE PHE TYR GLU SER SER VAL ALA HIS MET SEQRES 40 B 519 THR PHE GLN ALA VAL LYS ILE LYS ASP LEU ILE ARG HET EPE A 601 33 HET EPE B 601 33 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 5 HOH *425(H2 O) HELIX 1 AA1 LYS A 80 SER A 82 5 3 HELIX 2 AA2 GLY A 204 SER A 208 5 5 HELIX 3 AA3 GLU A 267 LEU A 271 5 5 HELIX 4 AA4 PRO A 272 ASN A 276 5 5 HELIX 5 AA5 ARG A 306 SER A 311 1 6 HELIX 6 AA6 ILE A 341 LYS A 346 1 6 HELIX 7 AA7 LYS A 465 ASN A 469 5 5 HELIX 8 AA8 LEU A 503 ALA A 505 5 3 HELIX 9 AA9 ILE A 547 ILE A 551 1 5 HELIX 10 AB1 LYS B 80 SER B 82 5 3 HELIX 11 AB2 GLY B 204 SER B 208 5 5 HELIX 12 AB3 GLU B 267 LEU B 271 5 5 HELIX 13 AB4 PRO B 272 ASN B 276 5 5 HELIX 14 AB5 ARG B 306 SER B 311 1 6 HELIX 15 AB6 ILE B 341 LYS B 346 1 6 HELIX 16 AB7 LYS B 465 ASN B 469 5 5 HELIX 17 AB8 LEU B 503 ALA B 505 5 3 HELIX 18 AB9 ILE B 547 ILE B 551 1 5 SHEET 1 AA1 6 ILE A 127 VAL A 132 0 SHEET 2 AA1 6 VAL A 84 TYR A 91 -1 N LEU A 89 O GLN A 129 SHEET 3 AA1 6 GLY A 150 MET A 160 -1 O TRP A 155 N PHE A 90 SHEET 4 AA1 6 VAL A 53 ALA A 62 -1 N LEU A 54 O VAL A 156 SHEET 5 AA1 6 SER A 35 GLN A 39 -1 N TYR A 37 O ARG A 58 SHEET 6 AA1 6 VAL A 185 ALA A 187 1 O VAL A 185 N VAL A 36 SHEET 1 AA2 4 ILE A 45 LEU A 46 0 SHEET 2 AA2 4 VAL A 193 ARG A 201 1 O ARG A 195 N ILE A 45 SHEET 3 AA2 4 LYS A 169 ILE A 179 -1 N LEU A 170 O ARG A 194 SHEET 4 AA2 4 LYS A 182 PRO A 183 -1 O LYS A 182 N ILE A 179 SHEET 1 AA3 7 THR A 138 LYS A 142 0 SHEET 2 AA3 7 LEU A 68 PHE A 75 -1 N ILE A 73 O LEU A 139 SHEET 3 AA3 7 LYS A 169 ILE A 179 -1 O GLU A 176 N THR A 72 SHEET 4 AA3 7 VAL A 193 ARG A 201 -1 O ARG A 194 N LEU A 170 SHEET 5 AA3 7 MET A 540 LYS A 546 -1 O PHE A 542 N ILE A 198 SHEET 6 AA3 7 THR A 528 TYR A 533 -1 N VAL A 529 O VAL A 545 SHEET 7 AA3 7 SER A 519 MET A 523 -1 N SER A 522 O GLY A 530 SHEET 1 AA4 4 SER A 210 THR A 218 0 SHEET 2 AA4 4 LEU A 224 ARG A 231 -1 O ASP A 229 N ARG A 212 SHEET 3 AA4 4 ILE A 242 SER A 249 -1 O ASP A 243 N VAL A 230 SHEET 4 AA4 4 ARG A 260 MET A 263 -1 O MET A 263 N VAL A 244 SHEET 1 AA5 5 THR A 339 ASN A 340 0 SHEET 2 AA5 5 GLN A 322 SER A 328 -1 N MET A 325 O THR A 339 SHEET 3 AA5 5 VAL A 292 TRP A 298 -1 N ALA A 296 O MET A 324 SHEET 4 AA5 5 VAL A 278 VAL A 285 -1 N LEU A 284 O TRP A 293 SHEET 5 AA5 5 GLY A 358 ARG A 359 1 O GLY A 358 N PRO A 281 SHEET 1 AA6 4 PHE A 352 GLN A 355 0 SHEET 2 AA6 4 LEU A 368 ILE A 375 -1 O GLN A 373 N LEU A 354 SHEET 3 AA6 4 PRO A 381 SER A 388 -1 O MET A 386 N PHE A 370 SHEET 4 AA6 4 HIS A 396 ILE A 397 -1 O HIS A 396 N TYR A 387 SHEET 1 AA7 4 ILE A 361 THR A 362 0 SHEET 2 AA7 4 LEU A 368 ILE A 375 -1 O VAL A 369 N ILE A 361 SHEET 3 AA7 4 PRO A 381 SER A 388 -1 O MET A 386 N PHE A 370 SHEET 4 AA7 4 ARG A 402 THR A 403 -1 O ARG A 402 N ALA A 383 SHEET 1 AA8 4 THR A 405 GLU A 414 0 SHEET 2 AA8 4 VAL A 417 ASP A 424 -1 O ARG A 423 N GLU A 407 SHEET 3 AA8 4 ALA A 431 THR A 435 -1 O ALA A 431 N MET A 422 SHEET 4 AA8 4 THR A 443 GLU A 444 -1 O THR A 443 N ILE A 434 SHEET 1 AA9 2 GLY A 428 SER A 429 0 SHEET 2 AA9 2 PRO A 453 GLU A 454 -1 O GLU A 454 N GLY A 428 SHEET 1 AB1 4 SER A 460 VAL A 464 0 SHEET 2 AB1 4 LEU A 475 PRO A 481 -1 O LEU A 475 N VAL A 464 SHEET 3 AB1 4 ILE A 490 SER A 495 -1 O LYS A 493 N PHE A 478 SHEET 4 AB1 4 GLN A 507 ASP A 511 -1 O LEU A 510 N ILE A 490 SHEET 1 AB2 6 ILE B 127 VAL B 132 0 SHEET 2 AB2 6 VAL B 84 TYR B 91 -1 N LEU B 89 O GLN B 129 SHEET 3 AB2 6 GLY B 150 MET B 160 -1 O TRP B 155 N PHE B 90 SHEET 4 AB2 6 VAL B 53 ALA B 62 -1 N LEU B 54 O VAL B 156 SHEET 5 AB2 6 SER B 35 GLN B 39 -1 N TYR B 37 O ARG B 58 SHEET 6 AB2 6 VAL B 185 ALA B 187 1 O VAL B 185 N VAL B 36 SHEET 1 AB3 3 ILE B 45 LEU B 46 0 SHEET 2 AB3 3 ARG B 194 ARG B 201 1 O ARG B 195 N ILE B 45 SHEET 3 AB3 3 LYS B 169 LEU B 170 -1 N LEU B 170 O ARG B 194 SHEET 1 AB4 5 ILE B 45 LEU B 46 0 SHEET 2 AB4 5 ARG B 194 ARG B 201 1 O ARG B 195 N ILE B 45 SHEET 3 AB4 5 MET B 540 LYS B 546 -1 O PHE B 542 N ILE B 198 SHEET 4 AB4 5 THR B 528 TYR B 533 -1 N VAL B 529 O VAL B 545 SHEET 5 AB4 5 SER B 519 MET B 523 -1 N SER B 522 O GLY B 530 SHEET 1 AB5 4 THR B 138 LYS B 142 0 SHEET 2 AB5 4 LEU B 68 PHE B 75 -1 N LEU B 71 O LEU B 141 SHEET 3 AB5 4 SER B 172 ILE B 179 -1 O VAL B 178 N ARG B 70 SHEET 4 AB5 4 LYS B 182 PRO B 183 -1 O LYS B 182 N ILE B 179 SHEET 1 AB6 4 SER B 210 THR B 218 0 SHEET 2 AB6 4 LEU B 224 ARG B 231 -1 O ASP B 229 N ARG B 212 SHEET 3 AB6 4 ILE B 242 SER B 249 -1 O ASP B 243 N VAL B 230 SHEET 4 AB6 4 ARG B 260 MET B 263 -1 O MET B 263 N VAL B 244 SHEET 1 AB7 5 THR B 339 ASN B 340 0 SHEET 2 AB7 5 GLN B 322 SER B 328 -1 N MET B 325 O THR B 339 SHEET 3 AB7 5 VAL B 292 TRP B 298 -1 N ALA B 296 O MET B 324 SHEET 4 AB7 5 VAL B 278 VAL B 285 -1 N LEU B 284 O TRP B 293 SHEET 5 AB7 5 GLY B 358 ARG B 359 1 O GLY B 358 N PRO B 281 SHEET 1 AB8 4 PHE B 352 GLN B 355 0 SHEET 2 AB8 4 LEU B 368 ILE B 375 -1 O GLN B 373 N LEU B 354 SHEET 3 AB8 4 PRO B 381 SER B 388 -1 O MET B 386 N PHE B 370 SHEET 4 AB8 4 HIS B 396 ILE B 397 -1 O HIS B 396 N TYR B 387 SHEET 1 AB9 4 ILE B 361 THR B 362 0 SHEET 2 AB9 4 LEU B 368 ILE B 375 -1 O VAL B 369 N ILE B 361 SHEET 3 AB9 4 PRO B 381 SER B 388 -1 O MET B 386 N PHE B 370 SHEET 4 AB9 4 ARG B 402 THR B 403 -1 O ARG B 402 N ALA B 383 SHEET 1 AC1 4 THR B 405 GLU B 414 0 SHEET 2 AC1 4 VAL B 417 ASP B 424 -1 O ARG B 423 N GLU B 407 SHEET 3 AC1 4 ALA B 431 THR B 435 -1 O ALA B 431 N MET B 422 SHEET 4 AC1 4 THR B 443 GLU B 444 -1 O THR B 443 N ILE B 434 SHEET 1 AC2 2 GLY B 428 SER B 429 0 SHEET 2 AC2 2 PRO B 453 GLU B 454 -1 O GLU B 454 N GLY B 428 SHEET 1 AC3 4 SER B 460 VAL B 464 0 SHEET 2 AC3 4 LEU B 475 PRO B 481 -1 O LEU B 477 N ILE B 462 SHEET 3 AC3 4 ILE B 490 SER B 495 -1 O LYS B 493 N PHE B 478 SHEET 4 AC3 4 GLN B 507 ASP B 511 -1 O LEU B 510 N ILE B 490 CISPEP 1 LEU A 238 GLN A 239 0 0.17 CISPEP 2 LEU B 238 GLN B 239 0 -0.50 CRYST1 79.740 79.740 349.500 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012541 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002861 0.00000