HEADER DNA BINDING PROTEIN 30-JAN-22 7QZ8 TITLE TRANSCRIPTIONAL REGULATOR LMRR WITH BOUND DAUNOMYCIN AND WITH TRP-67 TITLE 2 AND TRP-96 REPLACED BY THE UNNATURAL AMINO ACID 5,6-DIFLUOROTRP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 STRAIN: MG1363; SOURCE 5 GENE: LLMG_0323; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTIONAL REGULATOR, PADR, FLUORINATED TRYPTOPHAN, DAUNOMYCIN, KEYWDS 2 PI-PI INTERACTIONS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.W.H.THUNNISSEN REVDAT 2 31-JAN-24 7QZ8 1 REMARK REVDAT 1 23-NOV-22 7QZ8 0 JRNL AUTH J.SHAO,B.P.KUIPER,A.W.H.THUNNISSEN,R.H.COOL,L.ZHOU,C.HUANG, JRNL AUTH 2 B.W.DIJKSTRA,J.BROOS JRNL TITL THE ROLE OF TRYPTOPHAN IN PI INTERACTIONS IN PROTEINS: AN JRNL TITL 2 EXPERIMENTAL APPROACH. JRNL REF J.AM.CHEM.SOC. V. 144 13815 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35868012 JRNL DOI 10.1021/JACS.2C04986 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 11667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.5100 - 3.6500 0.98 2863 131 0.2042 0.2717 REMARK 3 2 3.6500 - 2.9000 0.99 2763 138 0.2800 0.3864 REMARK 3 3 2.9000 - 2.5300 0.99 2747 164 0.3148 0.3458 REMARK 3 4 2.5300 - 2.3000 0.98 2713 148 0.2923 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9077 5.9740 11.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.4205 T22: 0.5737 REMARK 3 T33: 0.5100 T12: -0.0369 REMARK 3 T13: -0.0129 T23: -0.1102 REMARK 3 L TENSOR REMARK 3 L11: 7.6224 L22: 9.4260 REMARK 3 L33: 6.1206 L12: -0.0768 REMARK 3 L13: -2.5719 L23: -2.3724 REMARK 3 S TENSOR REMARK 3 S11: 0.2921 S12: -0.7924 S13: 0.3477 REMARK 3 S21: 0.1768 S22: -0.3403 S23: 0.5399 REMARK 3 S31: -0.9090 S32: -0.5179 S33: 0.1122 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5707 6.1957 -0.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.5948 REMARK 3 T33: 0.4399 T12: 0.1001 REMARK 3 T13: -0.0837 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 4.8558 L22: 3.5261 REMARK 3 L33: 5.1924 L12: -1.2972 REMARK 3 L13: -1.6652 L23: 0.8953 REMARK 3 S TENSOR REMARK 3 S11: 0.2749 S12: 1.1082 S13: 0.0484 REMARK 3 S21: -0.5238 S22: -0.4381 S23: 0.3049 REMARK 3 S31: -0.2721 S32: -1.1666 S33: 0.2060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2956 10.4457 6.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.4426 T22: 0.3956 REMARK 3 T33: 0.5050 T12: -0.0038 REMARK 3 T13: -0.0391 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 4.4306 L22: 5.2483 REMARK 3 L33: 5.9789 L12: -1.7309 REMARK 3 L13: -0.9001 L23: -2.1260 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.1845 S13: 1.2714 REMARK 3 S21: 0.3628 S22: -0.2419 S23: -0.7924 REMARK 3 S31: -0.6182 S32: 0.2597 S33: 0.2054 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7953 1.8539 -1.8948 REMARK 3 T TENSOR REMARK 3 T11: 0.4644 T22: 0.3448 REMARK 3 T33: 0.5766 T12: 0.0142 REMARK 3 T13: 0.0353 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 7.7438 L22: 4.3341 REMARK 3 L33: 9.9470 L12: -4.0712 REMARK 3 L13: 1.7971 L23: -1.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.3944 S12: 0.6223 S13: 0.1050 REMARK 3 S21: -0.7109 S22: -0.4877 S23: -0.4819 REMARK 3 S31: 0.8817 S32: 0.2210 S33: 0.0447 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1450 -5.6350 24.8500 REMARK 3 T TENSOR REMARK 3 T11: 0.6889 T22: 0.5331 REMARK 3 T33: 0.7709 T12: 0.0544 REMARK 3 T13: 0.1142 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.0531 L22: 0.0153 REMARK 3 L33: 2.1323 L12: 0.2348 REMARK 3 L13: -1.9855 L23: 0.1994 REMARK 3 S TENSOR REMARK 3 S11: -0.6056 S12: -0.0480 S13: -1.9573 REMARK 3 S21: 0.1314 S22: -0.7277 S23: 0.3400 REMARK 3 S31: 0.1250 S32: -0.0467 S33: 1.4245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3419 3.8692 28.9106 REMARK 3 T TENSOR REMARK 3 T11: 0.4749 T22: 0.5403 REMARK 3 T33: 0.6850 T12: 0.0012 REMARK 3 T13: 0.0269 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.9345 L22: 6.6363 REMARK 3 L33: 3.2848 L12: -3.3681 REMARK 3 L13: -0.0211 L23: 3.7035 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.1241 S13: -0.0063 REMARK 3 S21: -0.5439 S22: -0.0713 S23: -0.7521 REMARK 3 S31: -0.8937 S32: 0.6691 S33: 0.0693 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8501 -0.6615 40.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.9728 T22: 0.7106 REMARK 3 T33: 0.5952 T12: 0.2824 REMARK 3 T13: -0.0601 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 4.2199 L22: 8.6479 REMARK 3 L33: 5.7998 L12: -2.4211 REMARK 3 L13: -3.3745 L23: 3.2969 REMARK 3 S TENSOR REMARK 3 S11: -1.2958 S12: -0.9156 S13: -0.5835 REMARK 3 S21: 2.4587 S22: 0.7330 S23: -0.1678 REMARK 3 S31: 0.7859 S32: 0.6191 S33: 0.3685 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5982 13.9734 38.4832 REMARK 3 T TENSOR REMARK 3 T11: 1.0188 T22: 0.6075 REMARK 3 T33: 0.7185 T12: 0.1875 REMARK 3 T13: -0.1871 T23: -0.1513 REMARK 3 L TENSOR REMARK 3 L11: 7.2471 L22: 5.2306 REMARK 3 L33: 8.0963 L12: -0.5817 REMARK 3 L13: -0.1860 L23: 1.0519 REMARK 3 S TENSOR REMARK 3 S11: -0.7063 S12: -1.0550 S13: 0.4656 REMARK 3 S21: 1.9943 S22: 0.4461 S23: -1.5236 REMARK 3 S31: -1.2536 S32: 0.3019 S33: 0.1047 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2592 3.7079 14.6858 REMARK 3 T TENSOR REMARK 3 T11: 0.4751 T22: 0.8433 REMARK 3 T33: 0.7050 T12: -0.0703 REMARK 3 T13: -0.0180 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6629 L22: 3.2393 REMARK 3 L33: 5.9901 L12: -1.7937 REMARK 3 L13: -2.4049 L23: 4.4640 REMARK 3 S TENSOR REMARK 3 S11: -0.4469 S12: 0.0748 S13: -0.4525 REMARK 3 S21: 0.0943 S22: -0.3952 S23: 0.8437 REMARK 3 S31: 0.2518 S32: -0.6445 S33: 0.7990 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 5 THROUGH 66 OR RESID REMARK 3 77 THROUGH 112)) REMARK 3 SELECTION : (CHAIN B AND RESID 5 THROUGH 112) REMARK 3 ATOM PAIRS NUMBER : 960 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292120666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14279 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 70.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 1.13200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3F8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 6 MG/ML IN 20 MM REMARK 280 TRIS-HCL, PH 8.0, 300 MM NACL. RESERVOIR SOLUTION: 100 MM SPG REMARK 280 BUFFER, PH 6.1, 25% PEG 1500, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.07300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.07300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 70 REMARK 465 SER A 71 REMARK 465 GLN A 72 REMARK 465 GLU A 113 REMARK 465 ALA A 114 REMARK 465 ILE A 115 REMARK 465 LYS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 68 REMARK 465 ASP B 69 REMARK 465 GLU B 70 REMARK 465 SER B 71 REMARK 465 GLN B 72 REMARK 465 GLY B 73 REMARK 465 GLY B 74 REMARK 465 ARG B 75 REMARK 465 ARG B 76 REMARK 465 GLU B 113 REMARK 465 ALA B 114 REMARK 465 ILE B 115 REMARK 465 LYS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 46 OG1 THR B 49 1.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QZ8 A 1 116 UNP A2RI36 A2RI36_LACLM 1 116 DBREF 7QZ8 B 1 116 UNP A2RI36 A2RI36_LACLM 1 116 SEQADV 7QZ8 HIS A 117 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS A 118 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS A 119 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS A 120 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS A 121 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS A 122 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS B 117 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS B 118 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS B 119 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS B 120 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS B 121 UNP A2RI36 EXPRESSION TAG SEQADV 7QZ8 HIS B 122 UNP A2RI36 EXPRESSION TAG SEQRES 1 A 122 MET ALA GLU ILE PRO LYS GLU MET LEU ARG ALA GLN THR SEQRES 2 A 122 ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN GLY ASP ASN SEQRES 3 A 122 TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS GLU ALA SER SEQRES 4 A 122 ASN GLY GLU MET GLU LEU ASN GLU ALA THR LEU TYR THR SEQRES 5 A 122 ILE PHE LYS ARG LEU GLU LYS ASP GLY ILE ILE SER SER SEQRES 6 A 122 TYR I3D GLY ASP GLU SER GLN GLY GLY ARG ARG LYS TYR SEQRES 7 A 122 TYR ARG LEU THR GLU ILE GLY HIS GLU ASN MET ARG LEU SEQRES 8 A 122 ALA PHE GLU SER I3D SER ARG VAL ASP LYS ILE ILE GLU SEQRES 9 A 122 ASN LEU GLU ALA ASN LYS LYS SER GLU ALA ILE LYS HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 B 122 MET ALA GLU ILE PRO LYS GLU MET LEU ARG ALA GLN THR SEQRES 2 B 122 ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN GLY ASP ASN SEQRES 3 B 122 TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS GLU ALA SER SEQRES 4 B 122 ASN GLY GLU MET GLU LEU ASN GLU ALA THR LEU TYR THR SEQRES 5 B 122 ILE PHE LYS ARG LEU GLU LYS ASP GLY ILE ILE SER SER SEQRES 6 B 122 TYR I3D GLY ASP GLU SER GLN GLY GLY ARG ARG LYS TYR SEQRES 7 B 122 TYR ARG LEU THR GLU ILE GLY HIS GLU ASN MET ARG LEU SEQRES 8 B 122 ALA PHE GLU SER I3D SER ARG VAL ASP LYS ILE ILE GLU SEQRES 9 B 122 ASN LEU GLU ALA ASN LYS LYS SER GLU ALA ILE LYS HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS MODRES 7QZ8 I3D A 67 TRP MODIFIED RESIDUE MODRES 7QZ8 I3D A 96 TRP MODIFIED RESIDUE MODRES 7QZ8 I3D B 67 TRP MODIFIED RESIDUE MODRES 7QZ8 I3D B 96 TRP MODIFIED RESIDUE HET I3D A 67 24 HET I3D A 96 24 HET I3D B 67 24 HET I3D B 96 24 HET DM1 A 201 66 HETNAM I3D 5,6-DIFLUORO-TRYPTOPHAN HETNAM DM1 DAUNOMYCIN HETSYN I3D (2S)-2-AZANYL-3-[5,6-BIS(FLUORANYL)-1H-INDOL-3- HETSYN 2 I3D YL]PROPANOIC ACID HETSYN DM1 DAUNORUBICIN FORMUL 1 I3D 4(C11 H10 F2 N2 O2) FORMUL 3 DM1 C27 H29 N O10 FORMUL 4 HOH *11(H2 O) HELIX 1 AA1 PRO A 5 GLY A 24 1 20 HELIX 2 AA2 VAL A 28 SER A 39 1 12 HELIX 3 AA3 ASN A 46 ASP A 60 1 15 HELIX 4 AA4 THR A 82 SER A 112 1 31 HELIX 5 AA5 PRO B 5 GLY B 24 1 20 HELIX 6 AA6 VAL B 28 SER B 39 1 12 HELIX 7 AA7 ASN B 46 ASP B 60 1 15 HELIX 8 AA8 THR B 82 SER B 112 1 31 SHEET 1 AA1 3 ASN A 26 TYR A 27 0 SHEET 2 AA1 3 ARG A 76 LEU A 81 -1 O TYR A 79 N ASN A 26 SHEET 3 AA1 3 ILE A 63 GLY A 68 -1 N GLY A 68 O ARG A 76 SHEET 1 AA2 3 ASN B 26 TYR B 27 0 SHEET 2 AA2 3 TYR B 78 LEU B 81 -1 O TYR B 79 N ASN B 26 SHEET 3 AA2 3 ILE B 63 TYR B 66 -1 N SER B 64 O ARG B 80 LINK C TYR A 66 N I3D A 67 1555 1555 1.33 LINK C I3D A 67 N GLY A 68 1555 1555 1.33 LINK C SER A 95 N I3D A 96 1555 1555 1.32 LINK C I3D A 96 N SER A 97 1555 1555 1.32 LINK C TYR B 66 N I3D B 67 1555 1555 1.33 LINK C SER B 95 N I3D B 96 1555 1555 1.32 LINK C I3D B 96 N SER B 97 1555 1555 1.32 CRYST1 104.146 35.744 71.154 90.00 97.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009602 0.000000 0.001297 0.00000 SCALE2 0.000000 0.027977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014182 0.00000