HEADER ANTIFUNGAL PROTEIN 31-JAN-22 7QZD TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PIKF TITLE 2 WITH AN ENGINEERED HMA DOMAIN OF PIKP-1 (PIKP-SNK-EKE) FROM RICE TITLE 3 (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESISTANCE PROTEIN PIKP-1; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: EXPRESSED PROTEIN CORRESPONDS TO RESIDUES 186-263 OF COMPND 7 WILD TYPE SEQUENCE. N-TERMINAL GP IS A SCAR FROM THE CLEAVED COMPND 8 EXPRESSION TAG; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: AVR-PIK; COMPND 11 CHAIN: C, G; COMPND 12 SYNONYM: AVR-PIK PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: EXPRESSED PROTEIN CORRESPONDS TO RESIDUES 22-113 OF COMPND 15 WILD TYPE SEQUENCE. N-TERMINAL M WAS ADDED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: PIKP-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 10 ORGANISM_TAXID: 318829; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLANT IMMUNITY, PATHOGEN EFFECTOR, PROTEIN ENGINEERING, BLAST KEYWDS 2 DISEASE, ANTIFUNGAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.R.MAIDMENT,M.FRANCESCHETTI,A.LONGYA,M.J.BANFIELD REVDAT 4 07-FEB-24 7QZD 1 REMARK REVDAT 3 31-MAY-23 7QZD 1 JRNL REVDAT 2 11-JAN-23 7QZD 1 JRNL REVDAT 1 22-JUN-22 7QZD 0 JRNL AUTH J.H.R.MAIDMENT,M.SHIMIZU,A.R.BENTHAM,S.VERA,M.FRANCESCHETTI, JRNL AUTH 2 A.LONGYA,C.E.M.STEVENSON,J.C.DE LA CONCEPCION,A.BIALAS, JRNL AUTH 3 S.KAMOUN,R.TERAUCHI,M.J.BANFIELD JRNL TITL EFFECTOR TARGET-GUIDED ENGINEERING OF AN INTEGRATED DOMAIN JRNL TITL 2 EXPANDS THE DISEASE RESISTANCE PROFILE OF A RICE NLR IMMUNE JRNL TITL 3 RECEPTOR. JRNL REF ELIFE V. 12 2023 JRNL REFN ESSN 2050-084X JRNL PMID 37199729 JRNL DOI 10.7554/ELIFE.81123 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.MAIDMENT,M.SHIMIZU,S.VERA,M.FRANCESCHETTI,A.LONGYA, REMARK 1 AUTH 2 C.STEVENSON,J.DE LA CONCEPCION,A.BIALAS,S.KAMOUN,R.TERAUCHI, REMARK 1 AUTH 3 M.BANFIELD REMARK 1 TITL EFFECTOR TARGET-GUIDED ENGINEERING OF AN INTEGRATED DOMAIN REMARK 1 TITL 2 EXPANDS THE DISEASE RESISTANCE PROFILE OF A RICE NLR IMMUNE REMARK 1 TITL 3 RECEPTOR REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.06.14.496076 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 27072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.79000 REMARK 3 B22 (A**2) : 3.51000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3575 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3608 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4807 ; 1.597 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8321 ; 1.192 ; 1.600 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 8.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;32.693 ;23.373 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;17.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3969 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 747 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1363 11.7525 -7.9365 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.0807 REMARK 3 T33: 0.2531 T12: -0.0386 REMARK 3 T13: 0.0470 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 6.1495 L22: 5.2342 REMARK 3 L33: 5.7712 L12: -1.2535 REMARK 3 L13: -2.0019 L23: -1.6731 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: -0.0245 S13: 0.6615 REMARK 3 S21: -0.0962 S22: -0.0060 S23: -0.4332 REMARK 3 S31: -0.4941 S32: 0.4071 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 187 B 263 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5134 6.2651 1.5914 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.1041 REMARK 3 T33: 0.1107 T12: 0.0381 REMARK 3 T13: 0.0362 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.4033 L22: 4.4413 REMARK 3 L33: 4.2934 L12: 1.7003 REMARK 3 L13: 0.0624 L23: 0.7682 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.1799 S13: 0.3344 REMARK 3 S21: -0.0388 S22: 0.1923 S23: 0.4207 REMARK 3 S31: -0.4187 S32: -0.4626 S33: -0.2049 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9650 -10.3748 -2.3826 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0325 REMARK 3 T33: 0.0088 T12: 0.0108 REMARK 3 T13: 0.0002 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 5.2906 L22: 2.5354 REMARK 3 L33: 2.0415 L12: 0.5686 REMARK 3 L13: 0.5197 L23: 0.0632 REMARK 3 S TENSOR REMARK 3 S11: 0.1554 S12: -0.0899 S13: -0.1282 REMARK 3 S21: -0.1132 S22: -0.1064 S23: -0.1141 REMARK 3 S31: 0.1938 S32: -0.0328 S33: -0.0490 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 188 E 259 REMARK 3 ORIGIN FOR THE GROUP (A): -38.2956 -12.8391 24.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.1473 REMARK 3 T33: 0.2171 T12: 0.0186 REMARK 3 T13: -0.0876 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.8951 L22: 5.0828 REMARK 3 L33: 6.8122 L12: 2.5732 REMARK 3 L13: 1.2947 L23: -1.5011 REMARK 3 S TENSOR REMARK 3 S11: 0.2611 S12: 0.1102 S13: -0.3566 REMARK 3 S21: 0.1424 S22: -0.0158 S23: -0.5254 REMARK 3 S31: 0.5505 S32: 0.2757 S33: -0.2453 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 187 F 262 REMARK 3 ORIGIN FOR THE GROUP (A): -54.1909 -7.9680 14.6831 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.2076 REMARK 3 T33: 0.0651 T12: 0.0085 REMARK 3 T13: 0.0325 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.7566 L22: 4.0423 REMARK 3 L33: 2.9155 L12: -1.5099 REMARK 3 L13: 1.0513 L23: 2.1329 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: -0.1339 S13: -0.2532 REMARK 3 S21: 0.2495 S22: 0.0392 S23: 0.2633 REMARK 3 S31: 0.1257 S32: -0.2512 S33: -0.1009 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 32 G 113 REMARK 3 ORIGIN FOR THE GROUP (A): -59.6779 8.7630 18.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.0519 REMARK 3 T33: 0.0522 T12: 0.0079 REMARK 3 T13: 0.0216 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 4.8310 L22: 1.5725 REMARK 3 L33: 3.4008 L12: -0.3383 REMARK 3 L13: 0.3963 L23: -0.3950 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.2087 S13: 0.4200 REMARK 3 S21: 0.1665 S22: -0.0376 S23: 0.0132 REMARK 3 S31: -0.3893 S32: -0.0283 S33: 0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7QZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 103.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.75100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A6W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.69050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.90200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.39100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.90200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.69050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.39100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 184 REMARK 465 PRO A 185 REMARK 465 GLY A 186 REMARK 465 ALA A 260 REMARK 465 LYS A 261 REMARK 465 GLU A 262 REMARK 465 ASP A 263 REMARK 465 GLY B 184 REMARK 465 PRO B 185 REMARK 465 GLY B 186 REMARK 465 GLY B 199 REMARK 465 MET C 21 REMARK 465 GLU C 22 REMARK 465 THR C 23 REMARK 465 GLY C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 TYR C 27 REMARK 465 ILE C 28 REMARK 465 GLU C 29 REMARK 465 LYS C 30 REMARK 465 ARG C 31 REMARK 465 GLY E 184 REMARK 465 PRO E 185 REMARK 465 GLY E 186 REMARK 465 LEU E 187 REMARK 465 GLY E 199 REMARK 465 ALA E 260 REMARK 465 LYS E 261 REMARK 465 GLU E 262 REMARK 465 ASP E 263 REMARK 465 GLY F 184 REMARK 465 PRO F 185 REMARK 465 GLY F 186 REMARK 465 GLY F 199 REMARK 465 ASN F 200 REMARK 465 ASP F 263 REMARK 465 MET G 21 REMARK 465 GLU G 22 REMARK 465 THR G 23 REMARK 465 GLY G 24 REMARK 465 ASN G 25 REMARK 465 LYS G 26 REMARK 465 TYR G 27 REMARK 465 ILE G 28 REMARK 465 GLU G 29 REMARK 465 LYS G 30 REMARK 465 ARG G 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 198 48.06 -97.79 REMARK 500 GLU B 262 75.12 -102.21 REMARK 500 TRP C 74 -155.49 -146.80 REMARK 500 ASN E 201 -76.36 -17.77 REMARK 500 TRP G 74 -149.30 -148.11 REMARK 500 LYS G 75 145.74 -174.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QZD A 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF 7QZD B 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF1 7QZD C 22 113 UNP A0A219T3Y8_MAGOR DBREF2 7QZD C A0A219T3Y8 22 113 DBREF 7QZD E 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF 7QZD F 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF1 7QZD G 22 113 UNP A0A219T3Y8_MAGOR DBREF2 7QZD G A0A219T3Y8 22 113 SEQADV 7QZD GLY A 184 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD PRO A 185 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD GLU A 258 UNP E9KPB5 SER 258 ENGINEERED MUTATION SEQADV 7QZD LYS A 261 UNP E9KPB5 ASN 261 ENGINEERED MUTATION SEQADV 7QZD GLU A 262 UNP E9KPB5 LYS 262 ENGINEERED MUTATION SEQADV 7QZD GLY B 184 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD PRO B 185 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD GLU B 258 UNP E9KPB5 SER 258 ENGINEERED MUTATION SEQADV 7QZD LYS B 261 UNP E9KPB5 ASN 261 ENGINEERED MUTATION SEQADV 7QZD GLU B 262 UNP E9KPB5 LYS 262 ENGINEERED MUTATION SEQADV 7QZD MET C 21 UNP A0A219T3Y INITIATING METHIONINE SEQADV 7QZD GLY E 184 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD PRO E 185 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD GLU E 258 UNP E9KPB5 SER 258 ENGINEERED MUTATION SEQADV 7QZD LYS E 261 UNP E9KPB5 ASN 261 ENGINEERED MUTATION SEQADV 7QZD GLU E 262 UNP E9KPB5 LYS 262 ENGINEERED MUTATION SEQADV 7QZD GLY F 184 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD PRO F 185 UNP E9KPB5 EXPRESSION TAG SEQADV 7QZD GLU F 258 UNP E9KPB5 SER 258 ENGINEERED MUTATION SEQADV 7QZD LYS F 261 UNP E9KPB5 ASN 261 ENGINEERED MUTATION SEQADV 7QZD GLU F 262 UNP E9KPB5 LYS 262 ENGINEERED MUTATION SEQADV 7QZD MET G 21 UNP A0A219T3Y INITIATING METHIONINE SEQRES 1 A 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 A 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 A 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 A 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 A 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 A 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL GLU GLN ALA LYS SEQRES 7 A 80 GLU ASP SEQRES 1 B 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 B 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 B 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 B 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 B 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 B 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL GLU GLN ALA LYS SEQRES 7 B 80 GLU ASP SEQRES 1 C 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 C 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN SEQRES 3 C 93 ALA ASP ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 C 93 LYS ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SEQRES 5 C 93 SER TRP LYS MET ASP LYS LYS VAL GLY PRO ASN TRP VAL SEQRES 6 C 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 C 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 C 93 GLY PHE SEQRES 1 E 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 E 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 E 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 E 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 E 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 E 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL GLU GLN ALA LYS SEQRES 7 E 80 GLU ASP SEQRES 1 F 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 F 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 F 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 F 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 F 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 F 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL GLU GLN ALA LYS SEQRES 7 F 80 GLU ASP SEQRES 1 G 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 G 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN SEQRES 3 G 93 ALA ASP ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 G 93 LYS ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SEQRES 5 G 93 SER TRP LYS MET ASP LYS LYS VAL GLY PRO ASN TRP VAL SEQRES 6 G 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 G 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 G 93 GLY PHE FORMUL 7 HOH *109(H2 O) HELIX 1 AA1 GLY A 199 THR A 213 1 15 HELIX 2 AA2 ASP A 237 VAL A 249 1 13 HELIX 3 AA3 ASN B 201 SER B 212 1 12 HELIX 4 AA4 ASP B 237 VAL B 249 1 13 HELIX 5 AA5 ASP C 34 GLU C 38 5 5 HELIX 6 AA6 ASN E 201 SER E 212 1 12 HELIX 7 AA7 ASP E 237 VAL E 249 1 13 HELIX 8 AA8 CYS F 202 SER F 212 1 11 HELIX 9 AA9 ASP F 237 VAL F 249 1 13 HELIX 10 AB1 ASP G 34 GLU G 38 5 5 SHEET 1 AA111 ALA A 252 GLU A 258 0 SHEET 2 AA111 LYS A 188 VAL A 195 -1 N LYS A 194 O GLU A 253 SHEET 3 AA111 LYS A 228 TYR A 234 -1 O VAL A 231 N ILE A 191 SHEET 4 AA111 VAL A 216 VAL A 222 -1 N ASP A 217 O VAL A 232 SHEET 5 AA111 VAL B 216 VAL B 222 -1 O VAL B 219 N VAL A 219 SHEET 6 AA111 LYS B 228 GLY B 233 -1 O VAL B 232 N ASP B 217 SHEET 7 AA111 GLN B 189 VAL B 195 -1 N ILE B 193 O ILE B 229 SHEET 8 AA111 ALA B 252 GLN B 259 -1 O GLU B 258 N LYS B 190 SHEET 9 AA111 LYS C 75 VAL C 80 -1 O ASP C 77 N VAL B 257 SHEET 10 AA111 ASN C 83 SER C 89 -1 O ASN C 83 N VAL C 80 SHEET 11 AA111 LEU C 95 SER C 96 -1 O SER C 96 N LYS C 88 SHEET 1 AA2 3 VAL C 63 CYS C 70 0 SHEET 2 AA2 3 CYS C 54 LYS C 60 -1 N MET C 58 O GLN C 65 SHEET 3 AA2 3 TRP C 103 LYS C 109 -1 O LYS C 108 N PHE C 55 SHEET 1 AA311 ALA E 252 GLU E 258 0 SHEET 2 AA311 GLN E 189 VAL E 195 -1 N LYS E 194 O GLU E 253 SHEET 3 AA311 LYS E 228 GLY E 233 -1 O ILE E 229 N ILE E 193 SHEET 4 AA311 VAL E 216 VAL E 222 -1 N ASP E 217 O VAL E 232 SHEET 5 AA311 VAL F 216 VAL F 222 -1 O VAL F 219 N VAL E 219 SHEET 6 AA311 LYS F 228 GLY F 233 -1 O VAL F 232 N ASP F 217 SHEET 7 AA311 GLN F 189 VAL F 195 -1 N ILE F 193 O ILE F 229 SHEET 8 AA311 ALA F 252 GLN F 259 -1 O GLU F 258 N LYS F 190 SHEET 9 AA311 LYS G 75 VAL G 80 -1 O ASP G 77 N VAL F 257 SHEET 10 AA311 ASN G 83 SER G 89 -1 O ASN G 83 N VAL G 80 SHEET 11 AA311 LEU G 95 SER G 96 -1 O SER G 96 N LYS G 88 SHEET 1 AA4 3 VAL G 63 CYS G 70 0 SHEET 2 AA4 3 CYS G 54 LYS G 60 -1 N MET G 58 O GLN G 65 SHEET 3 AA4 3 TRP G 103 LYS G 109 -1 O LYS G 108 N PHE G 55 SSBOND 1 CYS C 54 CYS C 93 1555 1555 2.04 SSBOND 2 CYS G 54 CYS G 93 1555 1555 2.05 CRYST1 67.381 80.782 103.804 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009634 0.00000