HEADER HYDROLASE 04-FEB-22 7R26 TITLE PI3K DELTA IN COMPLEX WITH SD5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT DELTA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: P110 SUBUNIT, UNP RESIDUES 106-1044; COMPND 6 SYNONYM: PI3-KINASE SUBUNIT DELTA,PI3K-DELTA,PI3KDELTA,PTDINS-3- COMPND 7 KINASE SUBUNIT DELTA,PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE COMPND 8 110 KDA CATALYTIC SUBUNIT DELTA,PTDINS-3-KINASE SUBUNIT P110-DELTA, COMPND 9 P110DELTA; COMPND 10 EC: 2.7.1.137,2.7.1.153; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3CD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, INHIBITOR, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GUTMANN,G.RUMMEL,B.SHRESTHA REVDAT 3 31-JAN-24 7R26 1 REMARK REVDAT 2 06-JUL-22 7R26 1 JRNL REVDAT 1 18-MAY-22 7R26 0 JRNL AUTH R.A.FAIRHURST,P.FURET,P.IMBACH-WEESE,F.STAUFFER,H.RUEEGER, JRNL AUTH 2 C.MCCARTHY,S.RIPOCHE,S.OSWALD,B.ARNAUD,A.JARY,M.MAIRA, JRNL AUTH 3 C.SCHNELL,D.A.GUTHY,M.WARTMANN,M.KIFFE,S.DESRAYAUD,F.BLASCO, JRNL AUTH 4 T.WIDMER,F.SEILER,S.GUTMANN,M.KNAPP,G.CARAVATTI JRNL TITL IDENTIFICATION OF NVP-CLR457 AS AN ORALLY BIOAVAILABLE JRNL TITL 2 NON-CNS-PENETRANT PAN-CLASS IA PHOSPHOINOSITOL-3-KINASE JRNL TITL 3 INHIBITOR. JRNL REF J.MED.CHEM. V. 65 8345 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35500094 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00267 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (3-FEB-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2322 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE : 0.2966 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79530 REMARK 3 B22 (A**2) : -6.62810 REMARK 3 B33 (A**2) : 8.42340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.50600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.274 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.204 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.274 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.206 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6279 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8510 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2074 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1074 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6279 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 825 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4963 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.86 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.73 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -18.5184 16.5401 29.1327 REMARK 3 T TENSOR REMARK 3 T11: -0.073 T22: -0.1005 REMARK 3 T33: -0.1337 T12: 0.1167 REMARK 3 T13: -0.0176 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.8933 L22: 0.9887 REMARK 3 L33: 3.1218 L12: -0.0894 REMARK 3 L13: -0.3209 L23: 0.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0576 S13: -0.3449 REMARK 3 S21: 0.0576 S22: 0.0011 S23: -0.6965 REMARK 3 S31: -0.3449 S32: -0.6965 S33: 0.0218 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7 (20-OCT-2021) REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.1.7 (20-OCT-2021) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.086 REMARK 200 RESOLUTION RANGE LOW (A) : 54.135 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IS5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31 MM NANO4, 13 MM AS, 4 MM NA2HPO4, REMARK 280 20.9 % GLYCEROL,8.55 % PEG4000, 0.1M IMIDAZOLE PH6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.50150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.50150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ARG A 176 REMARK 465 GLY A 177 REMARK 465 TRP A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 ASN A 187 REMARK 465 LEU A 232 REMARK 465 VAL A 233 REMARK 465 GLU A 234 REMARK 465 PRO A 292 REMARK 465 ALA A 293 REMARK 465 PRO A 294 REMARK 465 GLN A 295 REMARK 465 VAL A 296 REMARK 465 GLN A 297 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 LYS A 302 REMARK 465 PRO A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 LYS A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 VAL A 314 REMARK 465 SER A 315 REMARK 465 LEU A 316 REMARK 465 TRP A 317 REMARK 465 GLU A 329 REMARK 465 GLY A 330 REMARK 465 LEU A 341 REMARK 465 VAL A 342 REMARK 465 SER A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 ASN A 364 REMARK 465 VAL A 365 REMARK 465 VAL A 398 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ALA A 404 REMARK 465 ARG A 405 REMARK 465 SER A 406 REMARK 465 THR A 407 REMARK 465 LYS A 408 REMARK 465 LYS A 409 REMARK 465 LYS A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 VAL A 445 REMARK 465 PRO A 446 REMARK 465 ASP A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLY A 450 REMARK 465 GLU A 451 REMARK 465 PRO A 480 REMARK 465 HIS A 481 REMARK 465 ARG A 500 REMARK 465 GLY A 501 REMARK 465 ARG A 502 REMARK 465 ILE A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 GLU A 506 REMARK 465 GLU A 507 REMARK 465 GLN A 508 REMARK 465 LEU A 509 REMARK 465 GLN A 510 REMARK 465 ARG A 518 REMARK 465 GLY A 519 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 GLU A 522 REMARK 465 ASN A 840 REMARK 465 LYS A 841 REMARK 465 SER A 842 REMARK 465 ASN A 843 REMARK 465 MET A 844 REMARK 465 ALA A 845 REMARK 465 LYS A 920 REMARK 465 THR A 921 REMARK 465 LYS A 922 REMARK 465 PHE A 923 REMARK 465 GLY A 924 REMARK 465 ILE A 925 REMARK 465 ASN A 926 REMARK 465 ARG A 927 REMARK 465 GLU A 928 REMARK 465 TRP A 1027 REMARK 465 LYS A 1028 REMARK 465 THR A 1029 REMARK 465 LYS A 1030 REMARK 465 VAL A 1031 REMARK 465 ASN A 1032 REMARK 465 TRP A 1033 REMARK 465 LEU A 1034 REMARK 465 ALA A 1035 REMARK 465 HIS A 1036 REMARK 465 ASN A 1037 REMARK 465 VAL A 1038 REMARK 465 SER A 1039 REMARK 465 LYS A 1040 REMARK 465 ASP A 1041 REMARK 465 ASN A 1042 REMARK 465 ARG A 1043 REMARK 465 GLN A 1044 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 109 CG1 CG2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 111 CE NZ REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 ILE A 113 CD1 REMARK 470 LEU A 119 CD1 CD2 REMARK 470 LEU A 131 CD1 CD2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 136 CG1 CG2 REMARK 470 THR A 141 OG1 CG2 REMARK 470 LYS A 142 CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLU A 149 OE1 OE2 REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 SER A 199 OG REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 PHE A 203 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 206 CG CD OE1 NE2 REMARK 470 VAL A 207 CG1 CG2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 VAL A 227 CG1 CG2 REMARK 470 PHE A 228 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 ASN A 253 CG OD1 ND2 REMARK 470 ILE A 282 CD1 REMARK 470 ASN A 291 CG OD1 ND2 REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 SER A 324 OG REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 ILE A 328 CG1 CG2 CD1 REMARK 470 VAL A 333 CG1 CG2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 MET A 339 CE REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LEU A 347 CG CD1 CD2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LEU A 354 CD1 CD2 REMARK 470 THR A 357 OG1 CG2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 375 CD1 CD2 REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 PHE A 377 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 378 OD1 OD2 REMARK 470 ILE A 379 CG1 CG2 CD1 REMARK 470 VAL A 381 CG1 CG2 REMARK 470 LEU A 390 CD1 CD2 REMARK 470 LEU A 394 CG CD1 CD2 REMARK 470 TYR A 395 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 397 CG1 CG2 REMARK 470 ILE A 418 CG2 CD1 REMARK 470 GLN A 431 CG CD OE1 NE2 REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 THR A 434 OG1 CG2 REMARK 470 GLU A 436 CG CD OE1 OE2 REMARK 470 LEU A 452 CG CD1 CD2 REMARK 470 THR A 465 OG1 CG2 REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 LEU A 471 CD1 CD2 REMARK 470 VAL A 472 CG1 CG2 REMARK 470 LEU A 475 CG CD1 CD2 REMARK 470 GLU A 477 CG CD OE1 OE2 REMARK 470 VAL A 483 CG1 CG2 REMARK 470 LEU A 488 CG CD1 CD2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 ILE A 491 CG2 CD1 REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 ARG A 496 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 499 CG CD OE1 OE2 REMARK 470 LEU A 511 CG CD1 CD2 REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 513 CG CD OE1 OE2 REMARK 470 ILE A 514 CG1 CG2 CD1 REMARK 470 LEU A 515 CG CD1 CD2 REMARK 470 ARG A 517 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 523 CG CD1 CD2 REMARK 470 TYR A 524 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 525 CG CD OE1 OE2 REMARK 470 LYS A 528 CG CD CE NZ REMARK 470 ASP A 529 CG OD1 OD2 REMARK 470 LEU A 530 CG CD1 CD2 REMARK 470 LYS A 533 CG CD CE NZ REMARK 470 MET A 534 CG SD CE REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 VAL A 538 CG1 CG2 REMARK 470 GLU A 540 CG CD OE1 OE2 REMARK 470 PHE A 542 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 554 CG CD CE NZ REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 LEU A 568 CG CD1 CD2 REMARK 470 GLU A 573 OE1 OE2 REMARK 470 VAL A 592 CG1 CG2 REMARK 470 LYS A 598 CD CE NZ REMARK 470 LYS A 631 CD CE NZ REMARK 470 ILE A 643 CD1 REMARK 470 LYS A 680 NZ REMARK 470 LYS A 705 CG CD CE NZ REMARK 470 GLU A 726 OE1 OE2 REMARK 470 LYS A 755 CG CD CE NZ REMARK 470 MET A 756 CE REMARK 470 GLU A 766 CG CD OE1 OE2 REMARK 470 GLU A 767 CG CD OE1 OE2 REMARK 470 SER A 770 OG REMARK 470 GLN A 795 OE1 NE2 REMARK 470 LEU A 839 CD1 CD2 REMARK 470 LYS A 860 NZ REMARK 470 GLU A 866 CG CD OE1 OE2 REMARK 470 ARG A 870 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 919 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 929 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 934 CD1 REMARK 470 LEU A 972 CD1 REMARK 470 LYS A 993 CG CD CE NZ REMARK 470 LYS A 999 CD CE NZ REMARK 470 GLU A1009 CG CD OE1 OE2 REMARK 470 LYS A1013 CG CD CE NZ REMARK 470 VAL A1017 CG1 CG2 REMARK 470 LYS A1018 NZ REMARK 470 ARG A1024 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 270 158.70 -40.98 REMARK 500 LYS A 332 60.60 -116.81 REMARK 500 ILE A 379 136.18 -171.58 REMARK 500 ILE A 418 -61.23 -108.47 REMARK 500 PHE A 542 57.36 -144.73 REMARK 500 SER A 675 88.88 -155.65 REMARK 500 ASP A 736 101.79 -166.42 REMARK 500 GLU A 742 -89.76 -86.05 REMARK 500 ASP A 911 76.12 56.11 REMARK 500 ASN A 949 66.77 -158.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1478 DISTANCE = 5.81 ANGSTROMS DBREF 7R26 A 106 1044 UNP O35904 PK3CD_MOUSE 106 1043 SEQADV 7R26 GLY A 105 UNP O35904 EXPRESSION TAG SEQADV 7R26 GLN A 508 UNP O35904 INSERTION SEQRES 1 A 940 GLY GLY ASP ARG VAL LYS LYS LEU ILE ASN SER GLN ILE SEQRES 2 A 940 SER LEU LEU ILE GLY LYS GLY LEU HIS GLU PHE ASP SER SEQRES 3 A 940 LEU ARG ASP PRO GLU VAL ASN ASP PHE ARG THR LYS MET SEQRES 4 A 940 ARG GLN PHE CYS GLU GLU ALA ALA ALA HIS ARG GLN GLN SEQRES 5 A 940 LEU GLY TRP VAL GLU TRP LEU GLN TYR SER PHE PRO LEU SEQRES 6 A 940 GLN LEU GLU PRO SER ALA ARG GLY TRP ARG ALA GLY LEU SEQRES 7 A 940 LEU ARG VAL SER ASN ARG ALA LEU LEU VAL ASN VAL LYS SEQRES 8 A 940 PHE GLU GLY SER GLU GLU SER PHE THR PHE GLN VAL SER SEQRES 9 A 940 THR LYS ASP MET PRO LEU ALA LEU MET ALA CYS ALA LEU SEQRES 10 A 940 ARG LYS LYS ALA THR VAL PHE ARG GLN PRO LEU VAL GLU SEQRES 11 A 940 GLN PRO GLU GLU TYR ALA LEU GLN VAL ASN GLY ARG HIS SEQRES 12 A 940 GLU TYR LEU TYR GLY ASN TYR PRO LEU CYS HIS PHE GLN SEQRES 13 A 940 TYR ILE CYS SER CYS LEU HIS SER GLY LEU THR PRO HIS SEQRES 14 A 940 LEU THR MET VAL HIS SER SER SER ILE LEU ALA MET ARG SEQRES 15 A 940 ASP GLU GLN SER ASN PRO ALA PRO GLN VAL GLN LYS PRO SEQRES 16 A 940 ARG ALA LYS PRO PRO PRO ILE PRO ALA LYS LYS PRO SER SEQRES 17 A 940 SER VAL SER LEU TRP SER LEU GLU GLN PRO PHE SER ILE SEQRES 18 A 940 GLU LEU ILE GLU GLY ARG LYS VAL ASN ALA ASP GLU ARG SEQRES 19 A 940 MET LYS LEU VAL VAL GLN ALA GLY LEU PHE HIS GLY ASN SEQRES 20 A 940 GLU MET LEU CYS LYS THR VAL SER SER SER GLU VAL ASN SEQRES 21 A 940 VAL CYS SER GLU PRO VAL TRP LYS GLN ARG LEU GLU PHE SEQRES 22 A 940 ASP ILE SER VAL CYS ASP LEU PRO ARG MET ALA ARG LEU SEQRES 23 A 940 CYS PHE ALA LEU TYR ALA VAL VAL GLU LYS ALA LYS LYS SEQRES 24 A 940 ALA ARG SER THR LYS LYS LYS SER LYS LYS ALA ASP CYS SEQRES 25 A 940 PRO ILE ALA TRP ALA ASN LEU MET LEU PHE ASP TYR LYS SEQRES 26 A 940 ASP GLN LEU LYS THR GLY GLU ARG CYS LEU TYR MET TRP SEQRES 27 A 940 PRO SER VAL PRO ASP GLU LYS GLY GLU LEU LEU ASN PRO SEQRES 28 A 940 ALA GLY THR VAL ARG GLY ASN PRO ASN THR GLU SER ALA SEQRES 29 A 940 ALA ALA LEU VAL ILE TYR LEU PRO GLU VAL ALA PRO HIS SEQRES 30 A 940 PRO VAL TYR PHE PRO ALA LEU GLU LYS ILE LEU GLU LEU SEQRES 31 A 940 GLY ARG HIS GLY GLU ARG GLY ARG ILE THR GLU GLU GLU SEQRES 32 A 940 GLN LEU GLN LEU ARG GLU ILE LEU GLU ARG ARG GLY SER SEQRES 33 A 940 GLY GLU LEU TYR GLU HIS GLU LYS ASP LEU VAL TRP LYS SEQRES 34 A 940 MET ARG HIS GLU VAL GLN GLU HIS PHE PRO GLU ALA LEU SEQRES 35 A 940 ALA ARG LEU LEU LEU VAL THR LYS TRP ASN LYS HIS GLU SEQRES 36 A 940 ASP VAL ALA GLN MET LEU TYR LEU LEU CYS SER TRP PRO SEQRES 37 A 940 GLU LEU PRO VAL LEU SER ALA LEU GLU LEU LEU ASP PHE SEQRES 38 A 940 SER PHE PRO ASP CYS TYR VAL GLY SER PHE ALA ILE LYS SEQRES 39 A 940 SER LEU ARG LYS LEU THR ASP ASP GLU LEU PHE GLN TYR SEQRES 40 A 940 LEU LEU GLN LEU VAL GLN VAL LEU LYS TYR GLU SER TYR SEQRES 41 A 940 LEU ASP CYS GLU LEU THR LYS PHE LEU LEU GLY ARG ALA SEQRES 42 A 940 LEU ALA ASN ARG LYS ILE GLY HIS PHE LEU PHE TRP HIS SEQRES 43 A 940 LEU ARG SER GLU MET HIS VAL PRO SER VAL ALA LEU ARG SEQRES 44 A 940 PHE GLY LEU ILE MET GLU ALA TYR CYS ARG GLY SER THR SEQRES 45 A 940 HIS HIS MET LYS VAL LEU MET LYS GLN GLY GLU ALA LEU SEQRES 46 A 940 SER LYS LEU LYS ALA LEU ASN ASP PHE VAL LYS VAL SER SEQRES 47 A 940 SER GLN LYS THR THR LYS PRO GLN THR LYS GLU MET MET SEQRES 48 A 940 HIS MET CYS MET ARG GLN GLU THR TYR MET GLU ALA LEU SEQRES 49 A 940 SER HIS LEU GLN SER PRO LEU ASP PRO SER THR LEU LEU SEQRES 50 A 940 GLU GLU VAL CYS VAL GLU GLN CYS THR PHE MET ASP SER SEQRES 51 A 940 LYS MET LYS PRO LEU TRP ILE MET TYR SER SER GLU GLU SEQRES 52 A 940 ALA GLY SER ALA GLY ASN VAL GLY ILE ILE PHE LYS ASN SEQRES 53 A 940 GLY ASP ASP LEU ARG GLN ASP MET LEU THR LEU GLN MET SEQRES 54 A 940 ILE GLN LEU MET ASP VAL LEU TRP LYS GLN GLU GLY LEU SEQRES 55 A 940 ASP LEU ARG MET THR PRO TYR GLY CYS LEU PRO THR GLY SEQRES 56 A 940 ASP ARG THR GLY LEU ILE GLU VAL VAL LEU HIS SER ASP SEQRES 57 A 940 THR ILE ALA ASN ILE GLN LEU ASN LYS SER ASN MET ALA SEQRES 58 A 940 ALA THR ALA ALA PHE ASN LYS ASP ALA LEU LEU ASN TRP SEQRES 59 A 940 LEU LYS SER LYS ASN PRO GLY GLU ALA LEU ASP ARG ALA SEQRES 60 A 940 ILE GLU GLU PHE THR LEU SER CYS ALA GLY TYR CYS VAL SEQRES 61 A 940 ALA THR TYR VAL LEU GLY ILE GLY ASP ARG HIS SER ASP SEQRES 62 A 940 ASN ILE MET ILE ARG GLU SER GLY GLN LEU PHE HIS ILE SEQRES 63 A 940 ASP PHE GLY HIS PHE LEU GLY ASN PHE LYS THR LYS PHE SEQRES 64 A 940 GLY ILE ASN ARG GLU ARG VAL PRO PHE ILE LEU THR TYR SEQRES 65 A 940 ASP PHE VAL HIS VAL ILE GLN GLN GLY LYS THR ASN ASN SEQRES 66 A 940 SER GLU LYS PHE GLU ARG PHE ARG GLY TYR CYS GLU ARG SEQRES 67 A 940 ALA TYR THR ILE LEU ARG ARG HIS GLY LEU LEU PHE LEU SEQRES 68 A 940 HIS LEU PHE ALA LEU MET ARG ALA ALA GLY LEU PRO GLU SEQRES 69 A 940 LEU SER CYS SER LYS ASP ILE GLN TYR LEU LYS ASP SER SEQRES 70 A 940 LEU ALA LEU GLY LYS THR GLU GLU GLU ALA LEU LYS HIS SEQRES 71 A 940 PHE ARG VAL LYS PHE ASN GLU ALA LEU ARG GLU SER TRP SEQRES 72 A 940 LYS THR LYS VAL ASN TRP LEU ALA HIS ASN VAL SER LYS SEQRES 73 A 940 ASP ASN ARG GLN HET SD5 A1101 29 HETNAM SD5 5-[2,6-DI(MORPHOLIN-4-YL)PYRIMIDIN-4-YL]-4- HETNAM 2 SD5 (TRIFLUOROMETHYL)PYRIDIN-2-AMINE FORMUL 2 SD5 C18 H21 F3 N6 O2 FORMUL 3 HOH *278(H2 O) HELIX 1 AA1 ARG A 108 GLY A 122 1 15 HELIX 2 AA2 LEU A 125 LEU A 131 1 7 HELIX 3 AA3 ASP A 133 GLN A 156 1 24 HELIX 4 AA4 GLY A 158 PHE A 167 1 10 HELIX 5 AA5 MET A 212 PHE A 228 1 17 HELIX 6 AA6 GLN A 235 GLU A 237 5 3 HELIX 7 AA7 PRO A 255 HIS A 258 5 4 HELIX 8 AA8 PHE A 259 GLY A 269 1 11 HELIX 9 AA9 SER A 279 GLN A 289 1 11 HELIX 10 AB1 CYS A 382 LEU A 384 5 3 HELIX 11 AB2 ALA A 487 ARG A 496 1 10 HELIX 12 AB3 ARG A 512 GLU A 516 1 5 HELIX 13 AB4 TYR A 524 MET A 534 1 11 HELIX 14 AB5 MET A 534 PHE A 542 1 9 HELIX 15 AB6 ALA A 545 THR A 553 1 9 HELIX 16 AB7 LYS A 557 CYS A 569 1 13 HELIX 17 AB8 PRO A 575 LEU A 583 1 9 HELIX 18 AB9 ASP A 589 ARG A 601 1 13 HELIX 19 AC1 THR A 604 LEU A 619 1 16 HELIX 20 AC2 LYS A 620 GLU A 622 5 3 HELIX 21 AC3 CYS A 627 ALA A 639 1 13 HELIX 22 AC4 ASN A 640 SER A 653 1 14 HELIX 23 AC5 VAL A 657 SER A 675 1 19 HELIX 24 AC6 SER A 675 GLN A 704 1 30 HELIX 25 AC7 THR A 707 ARG A 720 1 14 HELIX 26 AC8 GLN A 721 SER A 729 1 9 HELIX 27 AC9 VAL A 746 CYS A 749 5 4 HELIX 28 AD1 SER A 765 ASN A 773 5 9 HELIX 29 AD2 LEU A 784 GLU A 804 1 21 HELIX 30 AD3 ILE A 834 GLN A 838 1 5 HELIX 31 AD4 PHE A 850 LYS A 852 5 3 HELIX 32 AD5 ASP A 853 ASN A 863 1 11 HELIX 33 AD6 GLU A 866 GLY A 890 1 25 HELIX 34 AD7 THR A 935 GLN A 943 1 9 HELIX 35 AD8 ASN A 949 HIS A 970 1 22 HELIX 36 AD9 HIS A 970 MET A 981 1 12 HELIX 37 AE1 ARG A 982 GLY A 985 5 4 HELIX 38 AE2 CYS A 991 ALA A 1003 1 13 HELIX 39 AE3 THR A 1007 SER A 1026 1 20 SHEET 1 AA1 5 SER A 202 SER A 208 0 SHEET 2 AA1 5 ALA A 189 PHE A 196 -1 N LEU A 190 O VAL A 207 SHEET 3 AA1 5 HIS A 273 HIS A 278 1 O MET A 276 N LYS A 195 SHEET 4 AA1 5 TYR A 239 VAL A 243 -1 N ALA A 240 O VAL A 277 SHEET 5 AA1 5 TYR A 249 LEU A 250 -1 O LEU A 250 N LEU A 241 SHEET 1 AA2 4 GLN A 373 SER A 380 0 SHEET 2 AA2 4 PRO A 322 LEU A 327 -1 N PHE A 323 O ILE A 379 SHEET 3 AA2 4 ALA A 470 TYR A 474 -1 O TYR A 474 N GLU A 326 SHEET 4 AA2 4 GLU A 436 TYR A 440 -1 N ARG A 437 O ILE A 473 SHEET 1 AA3 4 LYS A 340 LYS A 340 0 SHEET 2 AA3 4 ARG A 389 VAL A 397 -1 O VAL A 397 N LYS A 340 SHEET 3 AA3 4 GLN A 344 HIS A 349 -1 N GLY A 346 O CYS A 391 SHEET 4 AA3 4 VAL A 358 SER A 359 -1 O VAL A 358 N ALA A 345 SHEET 1 AA4 5 GLU A 352 MET A 353 0 SHEET 2 AA4 5 GLN A 344 HIS A 349 -1 N HIS A 349 O GLU A 352 SHEET 3 AA4 5 ARG A 389 VAL A 397 -1 O CYS A 391 N GLY A 346 SHEET 4 AA4 5 CYS A 416 MET A 424 -1 O LEU A 423 N LEU A 390 SHEET 5 AA4 5 TRP A 442 PRO A 443 -1 O TRP A 442 N TRP A 420 SHEET 1 AA5 2 LEU A 731 SER A 733 0 SHEET 2 AA5 2 ASP A 736 LEU A 741 -1 O LEU A 741 N LEU A 731 SHEET 1 AA6 3 GLU A 743 VAL A 744 0 SHEET 2 AA6 3 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743 SHEET 3 AA6 3 THR A 750 PHE A 751 -1 N THR A 750 O TRP A 760 SHEET 1 AA7 5 GLU A 743 VAL A 744 0 SHEET 2 AA7 5 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743 SHEET 3 AA7 5 VAL A 774 ASN A 780 -1 O ILE A 776 N ILE A 761 SHEET 4 AA7 5 THR A 822 GLU A 826 -1 O ILE A 825 N ILE A 777 SHEET 5 AA7 5 CYS A 815 GLY A 819 -1 N LEU A 816 O LEU A 824 SHEET 1 AA8 3 SER A 831 THR A 833 0 SHEET 2 AA8 3 ILE A 899 ARG A 902 -1 O ILE A 901 N ASP A 832 SHEET 3 AA8 3 LEU A 907 HIS A 909 -1 O PHE A 908 N MET A 900 CRYST1 143.003 64.530 117.347 90.00 103.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006993 0.000000 0.001656 0.00000 SCALE2 0.000000 0.015497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008757 0.00000