HEADER RNA BINDING PROTEIN 10-FEB-22 7R5F
TITLE CRYSTAL STRUCTURE OF YTHDF2 WITH COMPOUND YLI_DF_012
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING FAMILY PROTEIN 2;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-14,HIGH-GLUCOSE-REGULATED PROTEIN
COMPND 5 8,RENAL CARCINOMA ANTIGEN NY-REN-2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: YTHDF2, HGRG8;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS EPITRANSCRIPTOMIC READER, M6A READER, RNA BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR F.NAI,Y.LI,A.CAFLISCH
REVDAT 4 31-JAN-24 7R5F 1 REMARK
REVDAT 3 28-SEP-22 7R5F 1 JRNL
REVDAT 2 06-JUL-22 7R5F 1 REMARK
REVDAT 1 02-MAR-22 7R5F 0
JRNL AUTH F.NAI,R.NACHAWATI,F.ZALESAK,X.WANG,Y.LI,A.CAFLISCH
JRNL TITL FRAGMENT LIGANDS OF THE M 6 A-RNA READER YTHDF2.
JRNL REF ACS MED.CHEM.LETT. V. 13 1500 2022
JRNL REFN ISSN 1948-5875
JRNL PMID 36110386
JRNL DOI 10.1021/ACSMEDCHEMLETT.2C00303
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20_4459
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6
REMARK 3 NUMBER OF REFLECTIONS : 27610
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.207
REMARK 3 R VALUE (WORKING SET) : 0.205
REMARK 3 FREE R VALUE : 0.249
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1381
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 43.9800 - 4.3000 1.00 2704 143 0.1835 0.2267
REMARK 3 2 4.3000 - 3.4100 1.00 2668 140 0.1679 0.1974
REMARK 3 3 3.4100 - 2.9800 1.00 2657 140 0.2015 0.2534
REMARK 3 4 2.9800 - 2.7100 1.00 2669 141 0.2203 0.2782
REMARK 3 5 2.7100 - 2.5200 1.00 2645 139 0.2284 0.2402
REMARK 3 6 2.5200 - 2.3700 1.00 2655 140 0.2345 0.3133
REMARK 3 7 2.3700 - 2.2500 0.93 2462 129 0.2574 0.2925
REMARK 3 8 2.2500 - 2.1500 0.95 2530 133 0.2676 0.3435
REMARK 3 9 2.1500 - 2.0700 0.99 2628 139 0.2407 0.2893
REMARK 3 10 2.0700 - 2.0000 0.99 2611 137 0.2298 0.2582
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.982
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 31.19
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.64
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 2469
REMARK 3 ANGLE : 0.907 3351
REMARK 3 CHIRALITY : 0.061 348
REMARK 3 PLANARITY : 0.007 427
REMARK 3 DIHEDRAL : 6.632 327
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7R5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-22.
REMARK 100 THE DEPOSITION ID IS D_1292120967.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-APR-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27710
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 43.980
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 200 DATA REDUNDANCY : 12.30
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.1500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4RDN
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 59.33
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.025 M AMMONIUM SULFATE, 0.1 M SODIUM
REMARK 280 CITRATE TRIBASIC PH 5.1, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.92000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.96000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.94000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.98000
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.90000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 386
REMARK 465 GLY A 387
REMARK 465 SER A 388
REMARK 465 SER A 389
REMARK 465 TYR A 390
REMARK 465 HIS A 391
REMARK 465 HIS A 392
REMARK 465 HIS A 393
REMARK 465 HIS A 394
REMARK 465 HIS A 395
REMARK 465 HIS A 396
REMARK 465 SER A 397
REMARK 465 SER A 398
REMARK 465 GLY A 399
REMARK 465 HIS A 549
REMARK 465 THR A 550
REMARK 465 THR A 551
REMARK 465 SER A 552
REMARK 465 MET B 386
REMARK 465 GLY B 387
REMARK 465 SER B 388
REMARK 465 SER B 389
REMARK 465 TYR B 390
REMARK 465 HIS B 391
REMARK 465 HIS B 392
REMARK 465 HIS B 393
REMARK 465 HIS B 394
REMARK 465 HIS B 395
REMARK 465 HIS B 396
REMARK 465 SER B 397
REMARK 465 SER B 398
REMARK 465 GLY B 399
REMARK 465 GLU B 400
REMARK 465 THR B 550
REMARK 465 THR B 551
REMARK 465 SER B 552
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 405 CG CD OE1 NE2
REMARK 470 HIS A 406 CG ND1 CD2 CE1 NE2
REMARK 470 MET A 407 CG SD CE
REMARK 470 LYS A 408 CG CD CE NZ
REMARK 470 ARG A 425 NH2
REMARK 470 GLU A 436 CD OE1 OE2
REMARK 470 LYS A 452 CD CE NZ
REMARK 470 GLN A 488 OE1
REMARK 470 ASP A 489 CG OD1 OD2
REMARK 470 LYS A 490 CG CD CE NZ
REMARK 470 LYS A 492 CG CD CE NZ
REMARK 470 ARG A 498 CD NE CZ NH1 NH2
REMARK 470 LYS A 503 CD CE NZ
REMARK 470 ARG A 511 CD NE CZ NH1 NH2
REMARK 470 ARG A 527 NE CZ NH1 NH2
REMARK 470 LYS A 548 CG CD CE NZ
REMARK 470 LEU B 402 CG CD1 CD2
REMARK 470 MET B 407 CG SD CE
REMARK 470 LYS B 408 CG CD CE NZ
REMARK 470 GLU B 420 OE2
REMARK 470 ARG B 441 NH1 NH2
REMARK 470 ARG B 447 NH2
REMARK 470 ASN B 450 OD1 ND2
REMARK 470 LYS B 452 CG CD CE NZ
REMARK 470 GLN B 488 CG CD OE1 NE2
REMARK 470 LYS B 490 NZ
REMARK 470 ARG B 498 CZ NH1 NH2
REMARK 470 ARG B 511 NH1
REMARK 470 ARG B 527 NE CZ NH1 NH2
REMARK 470 LYS B 538 CD CE NZ
REMARK 470 LYS B 542 CE NZ
REMARK 470 LYS B 548 CG CD CE NZ
REMARK 470 HIS B 549 CG ND1 CD2 CE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 797 O HOH A 799 1.96
REMARK 500 O HOH B 754 O HOH B 813 2.01
REMARK 500 O HOH B 781 O HOH B 818 2.03
REMARK 500 O HOH B 808 O HOH B 809 2.10
REMARK 500 O HOH B 786 O HOH B 801 2.10
REMARK 500 O HOH A 730 O HOH A 794 2.12
REMARK 500 O HOH B 803 O HOH B 805 2.13
REMARK 500 O3 SO4 A 601 O HOH A 701 2.14
REMARK 500 O HOH B 754 O HOH B 807 2.18
REMARK 500 O HOH A 760 O HOH A 772 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH B 770 O HOH B 788 6654 1.75
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 494 138.97 -170.40
REMARK 500 MET B 407 58.62 -160.31
REMARK 500 SER B 434 -167.05 -105.11
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 828 DISTANCE = 9.10 ANGSTROMS
DBREF 7R5F A 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552
DBREF 7R5F B 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552
SEQADV 7R5F MET A 386 UNP Q9Y5A9 INITIATING METHIONINE
SEQADV 7R5F GLY A 387 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER A 388 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER A 389 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F TYR A 390 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 391 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 392 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 393 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 394 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 395 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 396 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER A 397 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER A 398 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F GLY A 399 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F GLU A 400 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F ASN A 401 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F LEU A 402 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F TYR A 403 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F PHE A 404 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F GLN A 405 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS A 406 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F MET A 407 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F MET B 386 UNP Q9Y5A9 INITIATING METHIONINE
SEQADV 7R5F GLY B 387 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER B 388 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER B 389 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F TYR B 390 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 391 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 392 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 393 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 394 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 395 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 396 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER B 397 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F SER B 398 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F GLY B 399 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F GLU B 400 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F ASN B 401 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F LEU B 402 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F TYR B 403 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F PHE B 404 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F GLN B 405 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F HIS B 406 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7R5F MET B 407 UNP Q9Y5A9 EXPRESSION TAG
SEQRES 1 A 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER
SEQRES 2 A 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG
SEQRES 3 A 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS
SEQRES 4 A 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS
SEQRES 5 A 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN
SEQRES 6 A 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY
SEQRES 7 A 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA
SEQRES 8 A 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP
SEQRES 9 A 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL
SEQRES 10 A 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU
SEQRES 11 A 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP
SEQRES 12 A 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU
SEQRES 13 A 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER
SEQRES 1 B 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER
SEQRES 2 B 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG
SEQRES 3 B 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS
SEQRES 4 B 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS
SEQRES 5 B 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN
SEQRES 6 B 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY
SEQRES 7 B 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA
SEQRES 8 B 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP
SEQRES 9 B 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL
SEQRES 10 B 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU
SEQRES 11 B 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP
SEQRES 12 B 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU
SEQRES 13 B 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER
HET SO4 A 601 5
HET SO4 A 602 5
HET SO4 A 603 5
HET SO4 A 604 5
HET CL A 605 1
HET SO4 B 601 5
HET SO4 B 602 5
HET I3V B 603 10
HETNAM SO4 SULFATE ION
HETNAM CL CHLORIDE ION
HETNAM I3V 5-AZANYL-6-METHYL-1~{H}-PYRIMIDINE-2,4-DIONE
FORMUL 3 SO4 6(O4 S 2-)
FORMUL 7 CL CL 1-
FORMUL 10 I3V C5 H7 N3 O2
FORMUL 11 HOH *234(H2 O)
HELIX 1 AA1 LEU A 402 MET A 407 1 6
HELIX 2 AA2 SER A 419 ASN A 430 1 12
HELIX 3 AA3 THR A 435 ASN A 450 1 16
HELIX 4 AA4 SER A 508 LEU A 510 5 3
HELIX 5 AA5 LEU A 515 GLU A 519 5 5
HELIX 6 AA6 PRO A 522 SER A 526 5 5
HELIX 7 AA7 PRO A 533 TYR A 547 1 15
HELIX 8 AA8 SER B 419 ASN B 430 1 12
HELIX 9 AA9 THR B 435 ASN B 450 1 16
HELIX 10 AB1 SER B 508 LEU B 510 5 3
HELIX 11 AB2 PRO B 522 SER B 526 5 5
HELIX 12 AB3 PRO B 533 TYR B 547 1 15
SHEET 1 AA1 4 ILE A 431 TRP A 432 0
SHEET 2 AA1 4 PHE A 495 PHE A 501 -1 O PHE A 495 N TRP A 432
SHEET 3 AA1 4 HIS A 466 MET A 473 -1 N VAL A 470 O PHE A 501
SHEET 4 AA1 4 VAL A 505 PRO A 506 -1 O VAL A 505 N PHE A 467
SHEET 1 AA2 6 ILE A 431 TRP A 432 0
SHEET 2 AA2 6 PHE A 495 PHE A 501 -1 O PHE A 495 N TRP A 432
SHEET 3 AA2 6 HIS A 466 MET A 473 -1 N VAL A 470 O PHE A 501
SHEET 4 AA2 6 VAL A 455 VAL A 461 -1 N LEU A 457 O ALA A 471
SHEET 5 AA2 6 ARG A 411 SER A 417 1 N ILE A 415 O LEU A 458
SHEET 6 AA2 6 GLU A 531 VAL A 532 -1 O VAL A 532 N VAL A 412
SHEET 1 AA3 6 ILE B 431 TRP B 432 0
SHEET 2 AA3 6 PHE B 495 PRO B 506 -1 O PHE B 495 N TRP B 432
SHEET 3 AA3 6 HIS B 466 MET B 473 -1 N VAL B 470 O ILE B 500
SHEET 4 AA3 6 VAL B 455 VAL B 461 -1 N LEU B 457 O ALA B 471
SHEET 5 AA3 6 ARG B 411 SER B 417 1 N ILE B 415 O LEU B 458
SHEET 6 AA3 6 GLU B 531 VAL B 532 -1 O VAL B 532 N VAL B 412
CRYST1 79.950 79.950 113.880 90.00 90.00 120.00 P 65 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012508 0.007221 0.000000 0.00000
SCALE2 0.000000 0.014443 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008781 0.00000