HEADER HYDROLASE 22-JUN-21 7R6B TITLE CRYSTAL STRUCTURE OF MUTANT R43D/L124D/R125A/C273S OF L-ASPARAGINASE I TITLE 2 FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ASPARAGINASE I; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: ANSA, YPO2161; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 8 EXPRESSION_SYSTEM_CELL: BACTERIA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS L-ASPARAGINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.STRZELCZYK,A.WLODAWER,J.LUBKOWSKI REVDAT 4 25-OCT-23 7R6B 1 REMARK REVDAT 3 08-FEB-23 7R6B 1 JRNL REVDAT 2 05-OCT-22 7R6B 1 JRNL REVDAT 1 06-JUL-22 7R6B 0 JRNL AUTH P.STRZELCZYK,D.ZHANG,J.ALEXANDRATOS,G.PISZCZEK,A.WLODAWER, JRNL AUTH 2 J.LUBKOWSKI JRNL TITL THE DIMERIC FORM OF BACTERIAL L-ASPARAGINASE YPAI IS FULLY JRNL TITL 2 ACTIVE. JRNL REF FEBS J. V. 290 780 2023 JRNL REFN ISSN 1742-464X JRNL PMID 36152020 JRNL DOI 10.1111/FEBS.16635 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 44242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2372 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4791 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4473 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6496 ; 1.993 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10395 ; 1.481 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 7.989 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;38.174 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;14.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 647 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5289 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 899 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 336 B 3 336 8892 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7R6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUID NITROGEN REMARK 200 COOLED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NTX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 10% (W/V) PEG REMARK 280 8000, 0.1 M IMIDAZOLE/ HYDROCHLORIC ACID, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.77400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.77400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.13150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.94650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.13150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.94650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.77400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.13150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.94650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.77400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.13150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.94650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLN A 2 REMARK 465 GLY A 168 REMARK 465 PHE A 169 REMARK 465 ASP A 170 REMARK 465 GLU A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 ILE A 185 REMARK 465 HIS A 186 REMARK 465 ILE A 187 REMARK 465 ARG A 188 REMARK 465 ARG A 189 REMARK 465 GLN A 190 REMARK 465 SER A 191 REMARK 465 SER A 192 REMARK 465 VAL A 193 REMARK 465 VAL A 194 REMARK 465 SER A 195 REMARK 465 PRO A 196 REMARK 465 THR A 197 REMARK 465 SER A 198 REMARK 465 ASN A 199 REMARK 465 GLY A 200 REMARK 465 VAL A 244 REMARK 465 GLY A 245 REMARK 465 ASN A 246 REMARK 465 ALA A 247 REMARK 465 PRO A 248 REMARK 465 GLY A 281 REMARK 465 GLY A 282 REMARK 465 TYR A 283 REMARK 465 ALA A 284 REMARK 465 THR A 285 REMARK 465 GLY A 286 REMARK 465 GLN A 338 REMARK 465 GLY B 1 REMARK 465 GLN B 2 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 ASN B 22 REMARK 465 ALA B 164 REMARK 465 HIS B 165 REMARK 465 ALA B 166 REMARK 465 ASP B 167 REMARK 465 GLY B 168 REMARK 465 PHE B 169 REMARK 465 ASP B 170 REMARK 465 GLU B 182 REMARK 465 ALA B 183 REMARK 465 GLY B 184 REMARK 465 ILE B 185 REMARK 465 HIS B 186 REMARK 465 ILE B 187 REMARK 465 ARG B 188 REMARK 465 ARG B 189 REMARK 465 GLN B 190 REMARK 465 SER B 191 REMARK 465 SER B 192 REMARK 465 VAL B 193 REMARK 465 VAL B 194 REMARK 465 SER B 195 REMARK 465 PRO B 196 REMARK 465 THR B 197 REMARK 465 SER B 198 REMARK 465 GLY B 281 REMARK 465 GLY B 282 REMARK 465 TYR B 283 REMARK 465 ALA B 284 REMARK 465 THR B 285 REMARK 465 GLY B 286 REMARK 465 THR B 337 REMARK 465 GLN B 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 45.41 -141.88 REMARK 500 THR A 271 79.71 -68.49 REMARK 500 GLN A 272 97.90 -67.05 REMARK 500 PHE A 298 -128.86 56.15 REMARK 500 ARG A 331 18.10 -155.96 REMARK 500 PRO B 201 -176.61 -69.19 REMARK 500 LYS B 250 107.44 -50.79 REMARK 500 PHE B 298 -128.17 56.84 REMARK 500 ARG B 331 17.15 -146.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 81 O REMARK 620 2 HOH A 515 O 33.3 REMARK 620 3 HOH A 584 O 31.6 2.5 REMARK 620 4 HOH A 643 O 33.6 3.3 2.5 REMARK 620 5 GLU B 321 OE1 34.0 3.0 2.6 0.6 REMARK 620 6 GLU B 321 OE2 33.1 1.5 1.6 1.9 1.7 REMARK 620 7 HOH B 567 O 31.7 3.6 1.4 2.0 2.4 2.3 REMARK 620 8 HOH B 658 O 31.3 2.1 1.3 3.5 3.5 2.0 2.6 REMARK 620 N 1 2 3 4 5 6 7 DBREF1 7R6B A 2 338 UNP A0A3N4B0Q2_YERPE DBREF2 7R6B A A0A3N4B0Q2 2 338 DBREF1 7R6B B 2 338 UNP A0A3N4B0Q2_YERPE DBREF2 7R6B B A0A3N4B0Q2 2 338 SEQADV 7R6B GLY A 1 UNP A0A3N4B0Q EXPRESSION TAG SEQADV 7R6B ASP A 43 UNP A0A3N4B0Q ARG 43 ENGINEERED MUTATION SEQADV 7R6B ASP A 124 UNP A0A3N4B0Q LEU 124 ENGINEERED MUTATION SEQADV 7R6B ALA A 125 UNP A0A3N4B0Q ARG 125 ENGINEERED MUTATION SEQADV 7R6B SER A 273 UNP A0A3N4B0Q CYS 273 ENGINEERED MUTATION SEQADV 7R6B GLY B 1 UNP A0A3N4B0Q EXPRESSION TAG SEQADV 7R6B ASP B 43 UNP A0A3N4B0Q ARG 43 ENGINEERED MUTATION SEQADV 7R6B ASP B 124 UNP A0A3N4B0Q LEU 124 ENGINEERED MUTATION SEQADV 7R6B ALA B 125 UNP A0A3N4B0Q ARG 125 ENGINEERED MUTATION SEQADV 7R6B SER B 273 UNP A0A3N4B0Q CYS 273 ENGINEERED MUTATION SEQRES 1 A 338 GLY GLN LYS LYS SER ILE TYR VAL ALA TYR THR GLY GLY SEQRES 2 A 338 THR ILE GLY MET GLN ARG SER ASP ASN GLY TYR ILE PRO SEQRES 3 A 338 VAL SER GLY HIS LEU GLN ARG GLN LEU ALA LEU MET PRO SEQRES 4 A 338 GLU PHE HIS ASP PRO GLU MET PRO ASP PHE THR ILE HIS SEQRES 5 A 338 GLU TYR ALA PRO LEU ILE ASP SER SER ASP MET THR PRO SEQRES 6 A 338 GLU ASP TRP GLN HIS ILE ALA ASN ASP ILE GLN GLN ASN SEQRES 7 A 338 TYR ASP LEU TYR ASP GLY PHE VAL ILE LEU HIS GLY THR SEQRES 8 A 338 ASP THR MET ALA PHE THR ALA SER ALA LEU SER PHE MET SEQRES 9 A 338 LEU GLU ASN LEU ALA LYS PRO VAL ILE ILE THR GLY SER SEQRES 10 A 338 GLN ILE PRO LEU ALA GLU ASP ALA SER ASP GLY GLN THR SEQRES 11 A 338 ASN LEU LEU ASN ALA LEU TYR LEU ALA ALA ASN HIS PRO SEQRES 12 A 338 VAL ASN GLU VAL SER LEU PHE PHE ASN ASN GLN LEU PHE SEQRES 13 A 338 ARG GLY ASN ARG THR THR LYS ALA HIS ALA ASP GLY PHE SEQRES 14 A 338 ASP ALA PHE ALA SER PRO ASN LEU SER VAL LEU LEU GLU SEQRES 15 A 338 ALA GLY ILE HIS ILE ARG ARG GLN SER SER VAL VAL SER SEQRES 16 A 338 PRO THR SER ASN GLY PRO LEU ILE VAL HIS ARG ILE THR SEQRES 17 A 338 PRO GLN PRO ILE GLY VAL VAL THR ILE TYR PRO GLY ILE SEQRES 18 A 338 SER GLY ALA VAL VAL ARG ASN PHE LEU LEU GLN PRO VAL SEQRES 19 A 338 LYS ALA LEU ILE LEU ARG SER TYR GLY VAL GLY ASN ALA SEQRES 20 A 338 PRO GLN LYS ALA GLU LEU LEU ASP GLU LEU LYS ASN ALA SEQRES 21 A 338 SER ASP ARG GLY ILE VAL VAL VAL ASN LEU THR GLN SER SEQRES 22 A 338 ILE SER GLY SER VAL ASN MET GLY GLY TYR ALA THR GLY SEQRES 23 A 338 ASN ALA LEU ALA GLN ALA GLY VAL ILE SER GLY PHE ASP SEQRES 24 A 338 MET THR VAL GLU ALA ALA LEU THR LYS LEU HIS TYR LEU SEQRES 25 A 338 LEU SER GLN SER LEU SER PRO ASN GLU ILE ARG GLN LEU SEQRES 26 A 338 MET GLN GLN ASN LEU ARG GLY GLU LEU THR ASP THR GLN SEQRES 1 B 338 GLY GLN LYS LYS SER ILE TYR VAL ALA TYR THR GLY GLY SEQRES 2 B 338 THR ILE GLY MET GLN ARG SER ASP ASN GLY TYR ILE PRO SEQRES 3 B 338 VAL SER GLY HIS LEU GLN ARG GLN LEU ALA LEU MET PRO SEQRES 4 B 338 GLU PHE HIS ASP PRO GLU MET PRO ASP PHE THR ILE HIS SEQRES 5 B 338 GLU TYR ALA PRO LEU ILE ASP SER SER ASP MET THR PRO SEQRES 6 B 338 GLU ASP TRP GLN HIS ILE ALA ASN ASP ILE GLN GLN ASN SEQRES 7 B 338 TYR ASP LEU TYR ASP GLY PHE VAL ILE LEU HIS GLY THR SEQRES 8 B 338 ASP THR MET ALA PHE THR ALA SER ALA LEU SER PHE MET SEQRES 9 B 338 LEU GLU ASN LEU ALA LYS PRO VAL ILE ILE THR GLY SER SEQRES 10 B 338 GLN ILE PRO LEU ALA GLU ASP ALA SER ASP GLY GLN THR SEQRES 11 B 338 ASN LEU LEU ASN ALA LEU TYR LEU ALA ALA ASN HIS PRO SEQRES 12 B 338 VAL ASN GLU VAL SER LEU PHE PHE ASN ASN GLN LEU PHE SEQRES 13 B 338 ARG GLY ASN ARG THR THR LYS ALA HIS ALA ASP GLY PHE SEQRES 14 B 338 ASP ALA PHE ALA SER PRO ASN LEU SER VAL LEU LEU GLU SEQRES 15 B 338 ALA GLY ILE HIS ILE ARG ARG GLN SER SER VAL VAL SER SEQRES 16 B 338 PRO THR SER ASN GLY PRO LEU ILE VAL HIS ARG ILE THR SEQRES 17 B 338 PRO GLN PRO ILE GLY VAL VAL THR ILE TYR PRO GLY ILE SEQRES 18 B 338 SER GLY ALA VAL VAL ARG ASN PHE LEU LEU GLN PRO VAL SEQRES 19 B 338 LYS ALA LEU ILE LEU ARG SER TYR GLY VAL GLY ASN ALA SEQRES 20 B 338 PRO GLN LYS ALA GLU LEU LEU ASP GLU LEU LYS ASN ALA SEQRES 21 B 338 SER ASP ARG GLY ILE VAL VAL VAL ASN LEU THR GLN SER SEQRES 22 B 338 ILE SER GLY SER VAL ASN MET GLY GLY TYR ALA THR GLY SEQRES 23 B 338 ASN ALA LEU ALA GLN ALA GLY VAL ILE SER GLY PHE ASP SEQRES 24 B 338 MET THR VAL GLU ALA ALA LEU THR LYS LEU HIS TYR LEU SEQRES 25 B 338 LEU SER GLN SER LEU SER PRO ASN GLU ILE ARG GLN LEU SEQRES 26 B 338 MET GLN GLN ASN LEU ARG GLY GLU LEU THR ASP THR GLN HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET CA B 407 1 HET CA B 408 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 CA 2(CA 2+) FORMUL 15 HOH *383(H2 O) HELIX 1 AA1 GLY A 13 MET A 17 5 5 HELIX 2 AA2 GLY A 29 LEU A 37 1 9 HELIX 3 AA3 MET A 38 ASP A 43 5 6 HELIX 4 AA4 ASP A 59 MET A 63 5 5 HELIX 5 AA5 THR A 64 TYR A 79 1 16 HELIX 6 AA6 ASP A 80 TYR A 82 5 3 HELIX 7 AA7 THR A 93 MET A 104 1 12 HELIX 8 AA8 ASP A 127 HIS A 142 1 16 HELIX 9 AA9 ASN A 159 THR A 161 5 3 HELIX 10 AB1 SER A 222 LEU A 230 1 9 HELIX 11 AB2 LYS A 250 ARG A 263 1 14 HELIX 12 AB3 ALA A 288 ALA A 292 1 5 HELIX 13 AB4 THR A 301 SER A 314 1 14 HELIX 14 AB5 SER A 318 GLN A 328 1 11 HELIX 15 AB6 GLY B 13 ILE B 15 5 3 HELIX 16 AB7 GLY B 29 LEU B 37 1 9 HELIX 17 AB8 MET B 38 ASP B 43 5 6 HELIX 18 AB9 ASP B 59 MET B 63 5 5 HELIX 19 AC1 THR B 64 ASN B 78 1 15 HELIX 20 AC2 TYR B 79 TYR B 82 5 4 HELIX 21 AC3 THR B 93 MET B 104 1 12 HELIX 22 AC4 ASP B 127 HIS B 142 1 16 HELIX 23 AC5 ASN B 159 THR B 161 5 3 HELIX 24 AC6 SER B 222 LEU B 230 1 9 HELIX 25 AC7 LYS B 250 ARG B 263 1 14 HELIX 26 AC8 ALA B 288 ALA B 292 1 5 HELIX 27 AC9 THR B 301 SER B 314 1 14 HELIX 28 AD1 SER B 318 GLN B 328 1 11 SHEET 1 AA1 6 ASP A 48 GLU A 53 0 SHEET 2 AA1 6 SER A 5 TYR A 10 1 N VAL A 8 O THR A 50 SHEET 3 AA1 6 GLY A 84 LEU A 88 1 O LEU A 88 N ALA A 9 SHEET 4 AA1 6 VAL A 112 THR A 115 1 O ILE A 113 N ILE A 87 SHEET 5 AA1 6 VAL A 147 PHE A 151 1 O SER A 148 N VAL A 112 SHEET 6 AA1 6 GLN A 154 ARG A 157 -1 O PHE A 156 N LEU A 149 SHEET 1 AA2 2 GLN A 18 SER A 20 0 SHEET 2 AA2 2 GLY A 23 ILE A 25 -1 O ILE A 25 N GLN A 18 SHEET 1 AA3 2 LEU A 105 GLU A 106 0 SHEET 2 AA3 2 ILE A 203 VAL A 204 -1 O ILE A 203 N GLU A 106 SHEET 1 AA4 2 THR A 162 LYS A 163 0 SHEET 2 AA4 2 PHE A 172 ALA A 173 -1 O ALA A 173 N THR A 162 SHEET 1 AA5 4 ILE A 212 THR A 216 0 SHEET 2 AA5 4 ALA A 236 SER A 241 1 O ILE A 238 N GLY A 213 SHEET 3 AA5 4 VAL A 266 THR A 271 1 O VAL A 268 N LEU A 239 SHEET 4 AA5 4 ILE A 295 SER A 296 1 O ILE A 295 N VAL A 267 SHEET 1 AA6 6 ASP B 48 GLU B 53 0 SHEET 2 AA6 6 SER B 5 TYR B 10 1 N VAL B 8 O THR B 50 SHEET 3 AA6 6 GLY B 84 LEU B 88 1 O LEU B 88 N ALA B 9 SHEET 4 AA6 6 VAL B 112 THR B 115 1 O ILE B 113 N ILE B 87 SHEET 5 AA6 6 VAL B 147 PHE B 151 1 O SER B 148 N VAL B 112 SHEET 6 AA6 6 GLN B 154 ARG B 157 -1 O GLN B 154 N PHE B 151 SHEET 1 AA7 2 MET B 17 GLN B 18 0 SHEET 2 AA7 2 ILE B 25 PRO B 26 -1 O ILE B 25 N GLN B 18 SHEET 1 AA8 2 LEU B 105 GLU B 106 0 SHEET 2 AA8 2 ILE B 203 VAL B 204 -1 O ILE B 203 N GLU B 106 SHEET 1 AA9 4 ILE B 212 THR B 216 0 SHEET 2 AA9 4 ALA B 236 TYR B 242 1 O ILE B 238 N GLY B 213 SHEET 3 AA9 4 VAL B 266 GLN B 272 1 O GLN B 272 N SER B 241 SHEET 4 AA9 4 ILE B 295 SER B 296 1 O ILE B 295 N ASN B 269 LINK O LEU A 81 CA CA B 407 1555 6554 2.65 LINK O HOH A 515 CA CA B 407 6555 1555 2.29 LINK O HOH A 584 CA CA B 407 6555 1555 2.53 LINK O HOH A 643 CA CA B 407 6555 1555 2.57 LINK OE1 GLU B 321 CA CA B 407 1555 1555 2.36 LINK OE2 GLU B 321 CA CA B 407 1555 1555 2.48 LINK CA CA B 407 O HOH B 567 1555 7555 2.30 LINK CA CA B 407 O HOH B 658 1555 1555 2.45 CISPEP 1 ALA A 55 PRO A 56 0 -6.07 CISPEP 2 GLN A 232 PRO A 233 0 9.76 CISPEP 3 ALA B 55 PRO B 56 0 1.61 CISPEP 4 GLN B 232 PRO B 233 0 4.88 CRYST1 100.263 115.893 127.548 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007840 0.00000