HEADER GENE REGULATION/DNA 23-JUN-21 7R6R TITLE CRYSTAL STRUCTURE OF A MYCOBACTERIOPHAGE CLUSTER A2 IMMUNITY TITLE 2 REPRESSOR:DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNITY REPRESSOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)- COMPND 8 3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)- COMPND 14 3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PHAGE TIPSYTHETREX; SOURCE 3 ORGANISM_TAXID: 2041553; SOURCE 4 GENE: SEA_TIPSYTHETREX_75; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PHAGE TIPSYTHETREX; SOURCE 11 ORGANISM_TAXID: 2041553; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PHAGE TIPSYTHETREX; SOURCE 15 ORGANISM_TAXID: 2041553 KEYWDS IMMUNITY REPRESSOR, HELIX-TURN-HELIX MOTIF, DNA BINDING PROTEIN, GENE KEYWDS 2 REGULATION, GENE REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.MCGINNIS,C.A.BRAMBLEY,B.STAMEY,W.C.GREEN,K.N.GRAGG,E.R.CAFFERTY, AUTHOR 2 T.C.TERWILLIGER,M.HAMMEL,T.J.HOLLIS,J.M.MILLER,M.D.GAINEY,J.R.WALLEN REVDAT 3 18-OCT-23 7R6R 1 REMARK REVDAT 2 27-JUL-22 7R6R 1 JRNL REVDAT 1 20-JUL-22 7R6R 0 JRNL AUTH R.J.MCGINNIS,C.A.BRAMBLEY,B.STAMEY,W.C.GREEN,K.N.GRAGG, JRNL AUTH 2 E.R.CAFFERTY,T.C.TERWILLIGER,M.HAMMEL,T.J.HOLLIS,J.M.MILLER, JRNL AUTH 3 M.D.GAINEY,J.R.WALLEN JRNL TITL A MONOMERIC MYCOBACTERIOPHAGE IMMUNITY REPRESSOR UTILIZES JRNL TITL 2 TWO DOMAINS TO RECOGNIZE AN ASYMMETRIC DNA SEQUENCE. JRNL REF NAT COMMUN V. 13 4105 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35835745 JRNL DOI 10.1038/S41467-022-31678-6 REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 8542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3900 - 5.6900 0.99 1404 155 0.1760 0.1899 REMARK 3 2 5.6900 - 4.5200 0.99 1353 148 0.1993 0.2680 REMARK 3 3 4.5200 - 3.9500 0.99 1329 147 0.2024 0.2582 REMARK 3 4 3.9400 - 3.5800 0.97 1308 143 0.2279 0.2796 REMARK 3 5 3.5800 - 3.3300 0.93 1228 133 0.2927 0.3458 REMARK 3 6 3.3300 - 3.1300 0.80 1070 124 0.3276 0.3336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.422 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2393 REMARK 3 ANGLE : 1.599 3413 REMARK 3 CHIRALITY : 0.086 367 REMARK 3 PLANARITY : 0.012 291 REMARK 3 DIHEDRAL : 30.209 601 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8845 4.9757 81.6863 REMARK 3 T TENSOR REMARK 3 T11: 0.3390 T22: 0.6208 REMARK 3 T33: 1.1822 T12: 0.1116 REMARK 3 T13: -0.3278 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.2111 L22: 9.5860 REMARK 3 L33: 5.7470 L12: -1.8537 REMARK 3 L13: 1.3262 L23: 1.4664 REMARK 3 S TENSOR REMARK 3 S11: 1.0808 S12: -0.3623 S13: 0.2262 REMARK 3 S21: 1.0049 S22: -1.2781 S23: 1.1505 REMARK 3 S31: 0.9890 S32: 0.0336 S33: -0.3547 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9349 6.3832 70.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.5360 T22: 0.7678 REMARK 3 T33: 0.9863 T12: 0.2268 REMARK 3 T13: -0.1139 T23: -0.2334 REMARK 3 L TENSOR REMARK 3 L11: 3.7325 L22: 1.5891 REMARK 3 L33: 4.2377 L12: 0.2619 REMARK 3 L13: 2.8974 L23: -0.3735 REMARK 3 S TENSOR REMARK 3 S11: 0.7392 S12: 0.0466 S13: -0.5062 REMARK 3 S21: -0.9718 S22: -0.4501 S23: -0.5273 REMARK 3 S31: 0.3918 S32: 0.5036 S33: -0.3382 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2132 11.9005 61.7046 REMARK 3 T TENSOR REMARK 3 T11: 0.7198 T22: 1.0042 REMARK 3 T33: 0.8528 T12: 0.1916 REMARK 3 T13: -0.1153 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 5.8092 L22: 5.2725 REMARK 3 L33: 3.9797 L12: 1.8098 REMARK 3 L13: 1.1692 L23: -0.7137 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: 0.2266 S13: -0.1000 REMARK 3 S21: -0.1404 S22: 0.1253 S23: 1.2294 REMARK 3 S31: 0.2197 S32: -0.7255 S33: -0.1569 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0221 12.1457 50.6753 REMARK 3 T TENSOR REMARK 3 T11: 1.1207 T22: 0.9916 REMARK 3 T33: 0.6840 T12: 0.1228 REMARK 3 T13: -0.3078 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 6.6215 L22: 4.2241 REMARK 3 L33: 4.9072 L12: -1.4564 REMARK 3 L13: -0.3006 L23: 2.2204 REMARK 3 S TENSOR REMARK 3 S11: 0.3455 S12: 1.3904 S13: -0.7969 REMARK 3 S21: -1.1536 S22: -0.0884 S23: 0.0736 REMARK 3 S31: 0.2556 S32: -0.5652 S33: -0.1437 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6458 22.6176 69.4297 REMARK 3 T TENSOR REMARK 3 T11: 0.8819 T22: 1.4576 REMARK 3 T33: 1.7519 T12: 0.5367 REMARK 3 T13: 0.1194 T23: 0.1233 REMARK 3 L TENSOR REMARK 3 L11: 9.4853 L22: 7.0607 REMARK 3 L33: 3.5457 L12: -0.0123 REMARK 3 L13: 1.7753 L23: 0.4599 REMARK 3 S TENSOR REMARK 3 S11: -0.9849 S12: -2.1410 S13: -0.0042 REMARK 3 S21: 0.8658 S22: 0.2472 S23: 1.9106 REMARK 3 S31: 0.1252 S32: 0.0793 S33: 0.0258 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9022 25.5134 70.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.8961 T22: 1.0570 REMARK 3 T33: 1.2953 T12: 0.2020 REMARK 3 T13: -0.0989 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 5.2436 L22: 2.7042 REMARK 3 L33: 0.4628 L12: -1.3451 REMARK 3 L13: 1.4953 L23: -0.9009 REMARK 3 S TENSOR REMARK 3 S11: -1.2606 S12: 0.0079 S13: -0.2598 REMARK 3 S21: 0.8728 S22: 0.8169 S23: -1.1803 REMARK 3 S31: -1.5617 S32: -0.8261 S33: 0.3749 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.2953 13.7180 67.9207 REMARK 3 T TENSOR REMARK 3 T11: 0.6215 T22: 1.3397 REMARK 3 T33: 1.1252 T12: 0.2519 REMARK 3 T13: -0.0443 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 7.1244 L22: 5.2874 REMARK 3 L33: 3.5462 L12: -0.5740 REMARK 3 L13: 1.6382 L23: -0.6498 REMARK 3 S TENSOR REMARK 3 S11: 0.3365 S12: 1.6860 S13: 1.6353 REMARK 3 S21: -0.5323 S22: 0.2363 S23: -1.1325 REMARK 3 S31: 0.5351 S32: 1.5667 S33: 0.1237 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3265 14.8752 70.2665 REMARK 3 T TENSOR REMARK 3 T11: 0.8381 T22: 1.5989 REMARK 3 T33: 1.6023 T12: 0.1328 REMARK 3 T13: 0.0695 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 6.2646 L22: 3.0621 REMARK 3 L33: 6.2374 L12: -1.8101 REMARK 3 L13: 4.1817 L23: -2.2088 REMARK 3 S TENSOR REMARK 3 S11: -0.7274 S12: 0.5146 S13: -0.6898 REMARK 3 S21: 0.5291 S22: 0.6820 S23: -0.9438 REMARK 3 S31: -1.8054 S32: 0.8202 S33: 0.4659 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.8027 6.4392 77.4827 REMARK 3 T TENSOR REMARK 3 T11: 0.9539 T22: 1.6808 REMARK 3 T33: 2.5104 T12: 0.3098 REMARK 3 T13: 0.2777 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 4.7967 L22: 4.9857 REMARK 3 L33: 9.0420 L12: -1.4478 REMARK 3 L13: -1.9986 L23: -1.2038 REMARK 3 S TENSOR REMARK 3 S11: -0.5265 S12: 2.1746 S13: -2.5198 REMARK 3 S21: -0.4324 S22: 1.5153 S23: -2.0879 REMARK 3 S31: 1.2626 S32: 1.1120 S33: 0.2296 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2321 6.2039 71.0268 REMARK 3 T TENSOR REMARK 3 T11: 0.7908 T22: 1.8373 REMARK 3 T33: 1.7944 T12: 0.3002 REMARK 3 T13: 0.2517 T23: -0.2507 REMARK 3 L TENSOR REMARK 3 L11: 6.3355 L22: 8.2870 REMARK 3 L33: 3.1242 L12: -1.7482 REMARK 3 L13: 3.4723 L23: -4.0131 REMARK 3 S TENSOR REMARK 3 S11: -0.8225 S12: 2.4789 S13: 0.2778 REMARK 3 S21: -2.1419 S22: 0.3462 S23: -0.8536 REMARK 3 S31: 0.9599 S32: 1.2258 S33: -0.4235 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 65 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1588 20.8027 68.9871 REMARK 3 T TENSOR REMARK 3 T11: 0.6692 T22: 0.9893 REMARK 3 T33: 1.2479 T12: 0.1258 REMARK 3 T13: -0.0129 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 6.0873 L22: 1.3652 REMARK 3 L33: 4.8023 L12: -0.1781 REMARK 3 L13: 5.3925 L23: 0.2636 REMARK 3 S TENSOR REMARK 3 S11: -1.5467 S12: 1.5012 S13: -0.5753 REMARK 3 S21: -0.2970 S22: -0.1021 S23: -0.4862 REMARK 3 S31: -1.2101 S32: 1.4572 S33: 0.5789 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 70 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8400 17.0390 67.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.6670 T22: 1.2049 REMARK 3 T33: 1.0409 T12: 0.2381 REMARK 3 T13: -0.1075 T23: -0.1027 REMARK 3 L TENSOR REMARK 3 L11: 6.3819 L22: 5.2673 REMARK 3 L33: 2.6677 L12: -2.0389 REMARK 3 L13: 3.8619 L23: -0.3590 REMARK 3 S TENSOR REMARK 3 S11: -0.3483 S12: -1.6227 S13: 0.8778 REMARK 3 S21: 0.8633 S22: -0.0277 S23: 0.1220 REMARK 3 S31: 0.0644 S32: 1.3109 S33: -0.0300 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8717 28.6505 71.9970 REMARK 3 T TENSOR REMARK 3 T11: 1.0842 T22: 1.3723 REMARK 3 T33: 1.8316 T12: 0.4798 REMARK 3 T13: -0.0270 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 7.7835 L22: 1.8530 REMARK 3 L33: 1.2079 L12: -1.8180 REMARK 3 L13: 3.1447 L23: -0.8414 REMARK 3 S TENSOR REMARK 3 S11: -0.2823 S12: -0.4318 S13: 0.3025 REMARK 3 S21: 0.9209 S22: 0.9367 S23: 2.3023 REMARK 3 S31: -0.7667 S32: -0.3302 S33: 0.1602 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 80 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8030 28.7091 64.9272 REMARK 3 T TENSOR REMARK 3 T11: 0.9825 T22: 2.1169 REMARK 3 T33: 1.7640 T12: 0.7154 REMARK 3 T13: 0.4653 T23: 0.2787 REMARK 3 L TENSOR REMARK 3 L11: 2.0030 L22: 7.5007 REMARK 3 L33: 6.1230 L12: 8.8848 REMARK 3 L13: 7.9490 L23: 6.7146 REMARK 3 S TENSOR REMARK 3 S11: -1.4989 S12: 2.0032 S13: 0.8339 REMARK 3 S21: 0.1794 S22: 0.1781 S23: 1.7104 REMARK 3 S31: -0.6836 S32: -0.3825 S33: -0.2216 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11608 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9005 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.130 REMARK 200 RESOLUTION RANGE LOW (A) : 47.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7TZ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-12% PEG 8,000, 0.1-0.3 M CACL2, AND REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.24500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.24500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 5 REMARK 465 GLN A 6 REMARK 465 HIS A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 GLU A 182 REMARK 465 PRO A 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 24 O3' DT B 24 C3' -0.038 REMARK 500 DG B 26 O3' DG B 26 C3' -0.041 REMARK 500 DG B 27 O3' DG B 27 C3' -0.063 REMARK 500 DT B 28 O3' DT B 28 C3' -0.063 REMARK 500 DT B 28 C1' DT B 28 N1 0.084 REMARK 500 DC C 61 O3' DC C 61 C3' -0.044 REMARK 500 DG C 63 O3' DG C 63 C3' -0.039 REMARK 500 DC C 64 O3' DC C 64 C3' -0.042 REMARK 500 DT C 66 O3' DT C 66 C3' -0.054 REMARK 500 DC C 72 O3' DC C 72 C3' -0.042 REMARK 500 DC C 73 O3' DC C 73 C3' -0.043 REMARK 500 DG C 77 O3' DG C 77 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 110 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU A 116 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 DT B 22 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT B 23 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT B 28 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC B 31 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 31 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 32 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 33 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT B 34 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA B 37 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC C 61 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG C 63 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC C 64 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 65 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 65 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DT C 66 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG C 67 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 68 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 69 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA C 70 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 71 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG C 71 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC C 72 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 78 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -169.99 -171.64 REMARK 500 PRO A 76 46.45 -103.30 REMARK 500 ASP A 150 -123.26 47.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TZ1 RELATED DB: PDB REMARK 900 RELATED ID: SASDLS7 RELATED DB: SASBDB DBREF1 7R6R A 1 183 UNP A0A2D1GKF7_9CAUD DBREF2 7R6R A A0A2D1GKF7 1 183 DBREF 7R6R B 22 42 PDB 7R6R 7R6R 22 42 DBREF 7R6R C 60 80 PDB 7R6R 7R6R 60 80 SEQADV 7R6R MET A -19 UNP A0A2D1GKF INITIATING METHIONINE SEQADV 7R6R GLY A -18 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R SER A -17 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R SER A -16 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A -15 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A -14 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A -13 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A -12 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A -11 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A -10 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R SER A -9 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R SER A -8 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R GLY A -7 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R LEU A -6 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R VAL A -5 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R PRO A -4 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R ARG A -3 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R GLY A -2 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R SER A -1 UNP A0A2D1GKF EXPRESSION TAG SEQADV 7R6R HIS A 0 UNP A0A2D1GKF EXPRESSION TAG SEQRES 1 A 203 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 203 LEU VAL PRO ARG GLY SER HIS MET SER GLY LYS ILE GLN SEQRES 3 A 203 HIS LYS ALA VAL VAL PRO ALA PRO SER ARG ILE PRO LEU SEQRES 4 A 203 THR LEU SER GLU ILE GLU ASP LEU ARG ARG LYS GLY PHE SEQRES 5 A 203 ASN GLN THR GLU ILE ALA GLU LEU TYR GLY VAL THR ARG SEQRES 6 A 203 GLN ALA VAL SER TRP HIS LYS LYS THR TYR GLY GLY ARG SEQRES 7 A 203 LEU THR THR ARG GLN ILE VAL GLN GLN ASN TRP PRO TRP SEQRES 8 A 203 ASP THR ARG LYS PRO HIS ASP LYS SER LYS ALA PHE GLN SEQRES 9 A 203 ARG LEU ARG ASP HIS GLY GLU TYR MET ARG VAL GLY SER SEQRES 10 A 203 PHE ARG THR MET SER GLU ASP LYS LYS LYS ARG LEU LEU SEQRES 11 A 203 SER TRP TRP LYS MET LEU ARG ASP ASN ASP LEU VAL LEU SEQRES 12 A 203 GLU PHE ASP PRO SER ILE GLU PRO TYR GLU GLY MET ALA SEQRES 13 A 203 GLY GLY GLY PHE ARG TYR VAL PRO ARG ASP ILE SER ASP SEQRES 14 A 203 ASP ASP LEU LEU ILE ARG VAL ASN GLU HIS THR GLN LEU SEQRES 15 A 203 THR ALA GLU GLY GLU LEU LEU TRP SER TRP PRO ASP ASP SEQRES 16 A 203 ILE GLU GLU LEU LEU SER GLU PRO SEQRES 1 B 21 DT DT DT DC DG DG DT DG DG DC DT DG DT SEQRES 2 B 21 DC DA DA DG DC DG DG DG SEQRES 1 C 21 DC DC DC DG DC DT DT DG DA DC DA DG DC SEQRES 2 C 21 DC DA DC DC DG DA DA DA HELIX 1 AA1 THR A 20 LYS A 30 1 11 HELIX 2 AA2 ASN A 33 GLY A 42 1 10 HELIX 3 AA3 THR A 44 GLY A 56 1 13 HELIX 4 AA4 THR A 60 ASN A 68 1 9 HELIX 5 AA5 PRO A 76 LYS A 79 5 4 HELIX 6 AA6 SER A 80 GLY A 96 1 17 HELIX 7 AA7 SER A 102 ASN A 119 1 18 HELIX 8 AA8 ASP A 146 ASP A 150 5 5 HELIX 9 AA9 THR A 163 TRP A 170 1 8 HELIX 10 AB1 ASP A 175 LEU A 180 1 6 SHEET 1 AA1 2 LEU A 121 PHE A 125 0 SHEET 2 AA1 2 PHE A 140 PRO A 144 -1 O ARG A 141 N GLU A 124 CISPEP 1 LYS A 75 PRO A 76 0 -5.70 CRYST1 132.490 43.510 89.280 90.00 102.26 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007548 0.000000 0.001640 0.00000 SCALE2 0.000000 0.022983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011462 0.00000