HEADER IMMUNE SYSTEM 24-JUN-21 7R74 TITLE CRYSTAL STRUCTURE OF LLAMA VHH ANTIBODY IN COMPLEX WITH HIV-1 HXBC2 TITLE 2 GP120 CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN 120; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE EXTENDED CORE OF HIV-1 GP120 FROM STRAIN HXBC2; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTIBODY C8 VHH DOMAIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: VHH DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS LLAMA, ANTIBODY, VHH, HIV-1, GP120, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ZHOU,P.D.KWONG REVDAT 3 18-OCT-23 7R74 1 REMARK REVDAT 2 03-AUG-22 7R74 1 JRNL REVDAT 1 30-MAR-22 7R74 0 JRNL AUTH T.ZHOU,L.CHEN,J.GORMAN,S.WANG,Y.D.KWON,B.C.LIN,M.K.LOUDER, JRNL AUTH 2 R.RAWI,E.D.STANCOFSKI,Y.YANG,B.ZHANG,A.F.QUIGLEY,L.E.MCCOY, JRNL AUTH 3 L.RUTTEN,T.VERRIPS,R.A.WEISS,N.A.DORIA-ROSE,L.SHAPIRO, JRNL AUTH 4 P.D.KWONG JRNL TITL STRUCTURAL BASIS FOR LLAMA NANOBODY RECOGNITION AND JRNL TITL 2 NEUTRALIZATION OF HIV-1 AT THE CD4-BINDING SITE. JRNL REF STRUCTURE V. 30 862 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35413243 JRNL DOI 10.1016/J.STR.2022.03.012 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19-4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 21684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5600 - 5.5200 1.00 2818 151 0.2279 0.2494 REMARK 3 2 5.5200 - 4.3800 1.00 2762 145 0.1761 0.2040 REMARK 3 3 4.3800 - 3.8300 1.00 2774 140 0.1770 0.2506 REMARK 3 4 3.8300 - 3.4800 1.00 2730 169 0.1993 0.2771 REMARK 3 5 3.4800 - 3.2300 1.00 2754 136 0.2376 0.3171 REMARK 3 6 3.2300 - 3.0400 0.99 2749 144 0.2419 0.3591 REMARK 3 7 3.0400 - 2.8900 0.89 2418 127 0.2667 0.3617 REMARK 3 8 2.8900 - 2.7600 0.58 1576 91 0.2905 0.3400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3691 -42.6440 30.4373 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.4634 REMARK 3 T33: 0.4064 T12: 0.0404 REMARK 3 T13: 0.0162 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 7.1616 L22: 0.0531 REMARK 3 L33: 1.8014 L12: -1.0302 REMARK 3 L13: -1.3711 L23: 0.1504 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.4509 S13: 0.7794 REMARK 3 S21: -0.0339 S22: 0.0300 S23: -0.0445 REMARK 3 S31: -0.2676 S32: -0.2769 S33: -0.1081 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5268 -42.4368 8.2056 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.6487 REMARK 3 T33: 0.3378 T12: -0.0322 REMARK 3 T13: -0.0367 T23: 0.1111 REMARK 3 L TENSOR REMARK 3 L11: 2.8877 L22: 5.5368 REMARK 3 L33: 3.2581 L12: -1.1313 REMARK 3 L13: 0.3126 L23: 1.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.1455 S12: 0.8613 S13: 0.2113 REMARK 3 S21: -0.5882 S22: -0.1378 S23: 0.2356 REMARK 3 S31: 0.0201 S32: -0.0498 S33: -0.0239 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 414 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2259 -43.5103 18.2898 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.3829 REMARK 3 T33: 0.3552 T12: 0.0151 REMARK 3 T13: -0.0183 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.3460 L22: 0.7159 REMARK 3 L33: 1.7667 L12: -0.2178 REMARK 3 L13: -0.1812 L23: -0.4134 REMARK 3 S TENSOR REMARK 3 S11: 0.1658 S12: 0.5105 S13: 0.2270 REMARK 3 S21: -0.1833 S22: -0.0067 S23: 0.2367 REMARK 3 S31: 0.0601 S32: -0.4071 S33: -0.0990 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.9083 -32.1831 30.5107 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.3284 REMARK 3 T33: 0.3620 T12: 0.0974 REMARK 3 T13: -0.0210 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.2845 L22: 5.5633 REMARK 3 L33: 3.0534 L12: 0.6257 REMARK 3 L13: -0.2550 L23: -1.2283 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: -0.4561 S13: -0.1083 REMARK 3 S21: 0.4540 S22: 0.2416 S23: -0.2180 REMARK 3 S31: -0.2936 S32: 0.0545 S33: -0.2496 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.2810 -31.0975 19.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.3763 T22: 0.6045 REMARK 3 T33: 0.6554 T12: 0.1141 REMARK 3 T13: 0.0324 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 4.2739 L22: 6.2697 REMARK 3 L33: 6.0453 L12: -0.6100 REMARK 3 L13: 1.4724 L23: 0.7556 REMARK 3 S TENSOR REMARK 3 S11: -0.3144 S12: 0.4803 S13: 0.3197 REMARK 3 S21: -1.1624 S22: -0.0104 S23: 1.6166 REMARK 3 S31: -0.5600 S32: -0.9674 S33: 0.2017 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.6898 -34.3632 23.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.5778 REMARK 3 T33: 0.4254 T12: -0.0349 REMARK 3 T13: 0.1585 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 4.4408 L22: 4.2671 REMARK 3 L33: 4.0577 L12: 1.3628 REMARK 3 L13: -2.4643 L23: -1.5071 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: 0.4998 S13: -0.1169 REMARK 3 S21: -0.6509 S22: 0.2433 S23: -0.5743 REMARK 3 S31: 0.7195 S32: 0.0628 S33: 0.1531 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7163 -31.8066 26.6881 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.5602 REMARK 3 T33: 0.4323 T12: 0.0453 REMARK 3 T13: -0.0376 T23: 0.0860 REMARK 3 L TENSOR REMARK 3 L11: 2.9678 L22: 5.5061 REMARK 3 L33: 0.3917 L12: 1.8486 REMARK 3 L13: -0.7729 L23: 0.3884 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0204 S13: 0.4644 REMARK 3 S21: -0.0684 S22: 0.0173 S23: -0.3377 REMARK 3 S31: -0.0984 S32: -0.2303 S33: -0.0007 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 45 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8219 -45.7740 31.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.3849 REMARK 3 T33: 0.4151 T12: -0.0472 REMARK 3 T13: 0.0548 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 7.6103 L22: 0.0228 REMARK 3 L33: 2.1367 L12: -0.4016 REMARK 3 L13: 2.2844 L23: 0.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: -0.9319 S13: -0.7423 REMARK 3 S21: -0.1570 S22: 0.0622 S23: 0.0294 REMARK 3 S31: 0.2530 S32: -0.1064 S33: -0.1841 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 236 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1828 -44.2533 11.1188 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.5088 REMARK 3 T33: 0.3010 T12: -0.0299 REMARK 3 T13: -0.0073 T23: -0.1069 REMARK 3 L TENSOR REMARK 3 L11: 4.4065 L22: 2.3352 REMARK 3 L33: 2.9810 L12: -0.5748 REMARK 3 L13: -1.4628 L23: 0.0954 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.4638 S13: -0.0762 REMARK 3 S21: -0.3049 S22: 0.0468 S23: 0.0246 REMARK 3 S31: -0.0122 S32: 0.3191 S33: -0.0651 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 378 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6915 -45.8951 15.2967 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.3916 REMARK 3 T33: 0.3810 T12: -0.0191 REMARK 3 T13: 0.0695 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.2045 L22: 1.0527 REMARK 3 L33: 2.6259 L12: -0.5931 REMARK 3 L13: 1.1383 L23: 0.2535 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.7587 S13: -0.2659 REMARK 3 S21: -0.2382 S22: 0.0398 S23: 0.0361 REMARK 3 S31: 0.0734 S32: 0.2888 S33: -0.0003 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4615 -56.0407 30.2972 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.3984 REMARK 3 T33: 0.4837 T12: 0.0907 REMARK 3 T13: -0.0063 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 4.0787 L22: 4.4277 REMARK 3 L33: 2.6845 L12: 1.2933 REMARK 3 L13: -1.2452 L23: 0.3615 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.5876 S13: -0.4679 REMARK 3 S21: 0.2618 S22: 0.0552 S23: 0.4524 REMARK 3 S31: 0.3369 S32: 0.2878 S33: -0.1122 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 40 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0110 -64.6861 17.2616 REMARK 3 T TENSOR REMARK 3 T11: 0.8881 T22: 1.1707 REMARK 3 T33: 1.4434 T12: 0.3982 REMARK 3 T13: 0.7548 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.3181 L22: 1.6376 REMARK 3 L33: 2.9157 L12: -0.4458 REMARK 3 L13: -0.9334 L23: 0.9025 REMARK 3 S TENSOR REMARK 3 S11: 0.3041 S12: 0.5881 S13: -0.0952 REMARK 3 S21: 0.2009 S22: -0.0854 S23: 0.3792 REMARK 3 S31: -0.2617 S32: -0.0711 S33: -0.2358 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 46 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9468 -49.2457 19.3304 REMARK 3 T TENSOR REMARK 3 T11: 0.4102 T22: 0.4242 REMARK 3 T33: 0.4715 T12: -0.0367 REMARK 3 T13: -0.0075 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 2.6625 L22: 9.5583 REMARK 3 L33: 3.1864 L12: -1.6298 REMARK 3 L13: 2.1549 L23: 1.6045 REMARK 3 S TENSOR REMARK 3 S11: -0.7015 S12: 0.7253 S13: 1.0068 REMARK 3 S21: -0.6327 S22: 0.4577 S23: -1.1078 REMARK 3 S31: -0.7280 S32: 0.4823 S33: 0.2783 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 64 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4117 -55.7536 24.8307 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.2736 REMARK 3 T33: 0.5296 T12: -0.0150 REMARK 3 T13: 0.0263 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 5.7541 L22: 6.6706 REMARK 3 L33: 4.3157 L12: -0.3838 REMARK 3 L13: 0.7084 L23: 2.4369 REMARK 3 S TENSOR REMARK 3 S11: -0.4079 S12: -0.1737 S13: -0.1922 REMARK 3 S21: -0.5158 S22: 0.1234 S23: 0.9972 REMARK 3 S31: -0.3832 S32: 0.1563 S33: 0.3975 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 91 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2416 -56.2607 26.4639 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.4277 REMARK 3 T33: 0.3856 T12: 0.0152 REMARK 3 T13: 0.1546 T23: -0.0800 REMARK 3 L TENSOR REMARK 3 L11: 3.9507 L22: 5.6186 REMARK 3 L33: 1.3946 L12: 3.1927 REMARK 3 L13: -0.4142 L23: -1.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.4484 S13: -0.8555 REMARK 3 S21: 0.0954 S22: -0.2459 S23: -0.1348 REMARK 3 S31: 0.2363 S32: 0.5440 S33: 0.2561 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LI2SO4 AND 100 MM HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.53850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.53850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 44 REMARK 465 ASP A 57 REMARK 465 ALA A 58 REMARK 465 LYS A 59 REMARK 465 ALA A 60 REMARK 465 TYR A 61 REMARK 465 ASP A 62 REMARK 465 THR A 63 REMARK 465 GLU A 64 REMARK 465 VAL A 65 REMARK 465 HIS A 66 REMARK 465 ASN A 67 REMARK 465 VAL A 68 REMARK 465 TRP A 69 REMARK 465 ALA A 70 REMARK 465 THR A 71 REMARK 465 HIS A 72 REMARK 465 PRO A 315 REMARK 465 ASN A 316 REMARK 465 ASN A 317 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 ASN A 325 REMARK 465 MET A 326 REMARK 465 ARG A 327 REMARK 465 GLN A 328 REMARK 465 PHE A 396 REMARK 465 ASN A 397 REMARK 465 SER A 398 REMARK 465 THR A 399 REMARK 465 TRP A 400 REMARK 465 SER A 401 REMARK 465 THR A 402 REMARK 465 GLU A 403 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 ASN A 406 REMARK 465 ASN A 407 REMARK 465 THR A 408 REMARK 465 GLU A 409 REMARK 465 GLY A 410 REMARK 465 SER A 411 REMARK 465 GLY A 431 REMARK 465 LYS A 432 REMARK 465 ALA A 433 REMARK 465 MET A 434 REMARK 465 TYR A 435 REMARK 465 ALA A 436 REMARK 465 PRO A 437 REMARK 465 PRO A 438 REMARK 465 ILE A 439 REMARK 465 SER A 440 REMARK 465 GLY A 441 REMARK 465 GLN A 442 REMARK 465 GLY A 459 REMARK 465 ASN A 460 REMARK 465 SER A 461 REMARK 465 ASN A 462 REMARK 465 GLU A 492 REMARK 465 VAL C 44 REMARK 465 ASP C 57 REMARK 465 ALA C 58 REMARK 465 LYS C 59 REMARK 465 ALA C 60 REMARK 465 TYR C 61 REMARK 465 ASP C 62 REMARK 465 THR C 63 REMARK 465 GLU C 64 REMARK 465 VAL C 65 REMARK 465 HIS C 66 REMARK 465 ASN C 67 REMARK 465 VAL C 68 REMARK 465 TRP C 69 REMARK 465 ALA C 70 REMARK 465 THR C 71 REMARK 465 HIS C 72 REMARK 465 PRO C 315 REMARK 465 ASN C 316 REMARK 465 ASN C 317 REMARK 465 GLY C 318 REMARK 465 GLY C 319 REMARK 465 SER C 320 REMARK 465 GLY C 321 REMARK 465 SER C 322 REMARK 465 GLY C 323 REMARK 465 GLY C 324 REMARK 465 ASN C 325 REMARK 465 MET C 326 REMARK 465 ARG C 327 REMARK 465 GLN C 328 REMARK 465 ASN C 397 REMARK 465 SER C 398 REMARK 465 THR C 399 REMARK 465 TRP C 400 REMARK 465 SER C 401 REMARK 465 THR C 402 REMARK 465 GLU C 403 REMARK 465 GLY C 404 REMARK 465 SER C 405 REMARK 465 ASN C 406 REMARK 465 ASN C 407 REMARK 465 THR C 408 REMARK 465 GLU C 409 REMARK 465 GLY C 410 REMARK 465 SER C 411 REMARK 465 GLY C 431 REMARK 465 LYS C 432 REMARK 465 ALA C 433 REMARK 465 MET C 434 REMARK 465 TYR C 435 REMARK 465 ALA C 436 REMARK 465 PRO C 437 REMARK 465 PRO C 438 REMARK 465 ILE C 439 REMARK 465 SER C 440 REMARK 465 GLY C 441 REMARK 465 GLN C 442 REMARK 465 GLY C 459 REMARK 465 ASN C 460 REMARK 465 SER C 461 REMARK 465 ASN C 462 REMARK 465 GLU C 492 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 627 O HOH A 629 1.98 REMARK 500 O7 NAG C 501 O HOH C 601 2.08 REMARK 500 OE1 GLU C 102 O HOH C 602 2.08 REMARK 500 OG SER A 256 O HOH A 601 2.14 REMARK 500 OD1 ASP A 78 O HOH A 602 2.14 REMARK 500 O HIS C 105 O HOH C 603 2.15 REMARK 500 O ASN B 32 O HOH B 201 2.18 REMARK 500 OE1 GLN C 352 O HOH C 604 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 NAG A 508 O4 NAG A 508 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 95.08 -179.05 REMARK 500 PRO A 81 -166.03 -70.91 REMARK 500 GLN A 82 111.17 -162.15 REMARK 500 THR A 123 -74.33 -86.46 REMARK 500 GLN A 203 -123.96 -135.49 REMARK 500 CYS A 205 87.57 64.32 REMARK 500 VAL A 208 87.40 -62.46 REMARK 500 GLN A 258 -61.54 61.26 REMARK 500 GLU A 268 -92.89 36.24 REMARK 500 ASN A 276 97.82 -165.89 REMARK 500 ALA A 281 -4.58 67.43 REMARK 500 SER A 365 53.95 -101.95 REMARK 500 PHE A 391 77.35 -118.51 REMARK 500 ASN A 392 51.75 -154.29 REMARK 500 ASP C 78 67.28 -165.46 REMARK 500 ASN C 80 98.70 -58.85 REMARK 500 CYS C 205 157.74 63.87 REMARK 500 SER C 209 169.88 175.62 REMARK 500 GLN C 258 -67.16 62.45 REMARK 500 GLU C 268 -81.51 -120.29 REMARK 500 ASN C 276 100.23 -170.88 REMARK 500 ARG C 444 152.81 179.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 78 PRO C 79 146.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TMF RELATED DB: PDB REMARK 900 LLAMA VHH ANTIBODY J3 IN COMPLEX WITH GP120 DBREF 7R74 A 44 492 PDB 7R74 7R74 44 492 DBREF 7R74 B 1 118 PDB 7R74 7R74 1 118 DBREF 7R74 C 44 492 PDB 7R74 7R74 44 492 DBREF 7R74 D 1 118 PDB 7R74 7R74 1 118 SEQRES 1 A 360 VAL TRP LYS GLU ALA THR THR THR LEU PHE CYS ALA SER SEQRES 2 A 360 ASP ALA LYS ALA TYR ASP THR GLU VAL HIS ASN VAL TRP SEQRES 3 A 360 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 360 GLU VAL VAL LEU VAL ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 360 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 A 360 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 A 360 LEU THR GLY GLY SER VAL ILE THR GLN ALA CYS PRO LYS SEQRES 8 A 360 VAL SER PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 9 A 360 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 A 360 ASN GLY THR GLY PRO CYS THR ASN VAL SER THR VAL GLN SEQRES 11 A 360 CYS THR HIS GLY ILE ARG PRO VAL VAL SER THR GLN LEU SEQRES 12 A 360 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU VAL VAL ILE SEQRES 13 A 360 ARG SER VAL ASN PHE THR ASP ASN ALA LYS THR ILE ILE SEQRES 14 A 360 VAL GLN LEU ASN THR SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 A 360 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN MET ARG SEQRES 16 A 360 GLN ALA HIS CYS ASN ILE SER ARG ALA LYS TRP ASN ASN SEQRES 17 A 360 THR LEU LYS GLN ILE ALA SER LYS LEU ARG GLU GLN PHE SEQRES 18 A 360 GLY ASN ASN LYS THR ILE ILE PHE LYS GLN SER SER GLY SEQRES 19 A 360 GLY ASP PRO GLU ILE VAL THR HIS SER PHE ASN CYS GLY SEQRES 20 A 360 GLY GLU PHE PHE TYR CYS ASN SER THR GLN LEU PHE ASN SEQRES 21 A 360 SER THR TRP PHE ASN SER THR TRP SER THR GLU GLY SER SEQRES 22 A 360 ASN ASN THR GLU GLY SER ASP THR ILE THR LEU PRO CYS SEQRES 23 A 360 ARG ILE LYS GLN ILE ILE ASN MET TRP GLN LYS VAL GLY SEQRES 24 A 360 LYS ALA MET TYR ALA PRO PRO ILE SER GLY GLN ILE ARG SEQRES 25 A 360 CYS SER SER ASN ILE THR GLY LEU LEU LEU THR ARG ASP SEQRES 26 A 360 GLY GLY ASN SER ASN ASN GLU SER GLU ILE PHE ARG PRO SEQRES 27 A 360 GLY GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU SEQRES 28 A 360 TYR LYS TYR LYS VAL VAL LYS ILE GLU SEQRES 1 B 118 ALA VAL GLN LEU VAL ASP SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 118 ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER GLY SEQRES 3 B 118 SER ILE PHE SER ILE ASN ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 118 ALA PRO GLY LYS GLN ARG ASP LEU VAL ALA ARG ILE SER SEQRES 5 B 118 GLY ASP SER SER THR TYR TYR ILE ASP SER VAL LYS GLY SEQRES 6 B 118 ARG PHE THR ILE SER ARG ASP ASN ALA ALA ASN THR VAL SEQRES 7 B 118 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 118 VAL TYR TYR CYS ALA ALA ARG ARG LEU PRO ILE GLY ASP SEQRES 9 B 118 TYR THR ASP TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 10 B 118 SER SEQRES 1 C 360 VAL TRP LYS GLU ALA THR THR THR LEU PHE CYS ALA SER SEQRES 2 C 360 ASP ALA LYS ALA TYR ASP THR GLU VAL HIS ASN VAL TRP SEQRES 3 C 360 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 C 360 GLU VAL VAL LEU VAL ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 C 360 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 C 360 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 C 360 LEU THR GLY GLY SER VAL ILE THR GLN ALA CYS PRO LYS SEQRES 8 C 360 VAL SER PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 9 C 360 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 C 360 ASN GLY THR GLY PRO CYS THR ASN VAL SER THR VAL GLN SEQRES 11 C 360 CYS THR HIS GLY ILE ARG PRO VAL VAL SER THR GLN LEU SEQRES 12 C 360 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU VAL VAL ILE SEQRES 13 C 360 ARG SER VAL ASN PHE THR ASP ASN ALA LYS THR ILE ILE SEQRES 14 C 360 VAL GLN LEU ASN THR SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 C 360 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN MET ARG SEQRES 16 C 360 GLN ALA HIS CYS ASN ILE SER ARG ALA LYS TRP ASN ASN SEQRES 17 C 360 THR LEU LYS GLN ILE ALA SER LYS LEU ARG GLU GLN PHE SEQRES 18 C 360 GLY ASN ASN LYS THR ILE ILE PHE LYS GLN SER SER GLY SEQRES 19 C 360 GLY ASP PRO GLU ILE VAL THR HIS SER PHE ASN CYS GLY SEQRES 20 C 360 GLY GLU PHE PHE TYR CYS ASN SER THR GLN LEU PHE ASN SEQRES 21 C 360 SER THR TRP PHE ASN SER THR TRP SER THR GLU GLY SER SEQRES 22 C 360 ASN ASN THR GLU GLY SER ASP THR ILE THR LEU PRO CYS SEQRES 23 C 360 ARG ILE LYS GLN ILE ILE ASN MET TRP GLN LYS VAL GLY SEQRES 24 C 360 LYS ALA MET TYR ALA PRO PRO ILE SER GLY GLN ILE ARG SEQRES 25 C 360 CYS SER SER ASN ILE THR GLY LEU LEU LEU THR ARG ASP SEQRES 26 C 360 GLY GLY ASN SER ASN ASN GLU SER GLU ILE PHE ARG PRO SEQRES 27 C 360 GLY GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU SEQRES 28 C 360 TYR LYS TYR LYS VAL VAL LYS ILE GLU SEQRES 1 D 118 ALA VAL GLN LEU VAL ASP SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 118 ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER GLY SEQRES 3 D 118 SER ILE PHE SER ILE ASN ALA MET GLY TRP TYR ARG GLN SEQRES 4 D 118 ALA PRO GLY LYS GLN ARG ASP LEU VAL ALA ARG ILE SER SEQRES 5 D 118 GLY ASP SER SER THR TYR TYR ILE ASP SER VAL LYS GLY SEQRES 6 D 118 ARG PHE THR ILE SER ARG ASP ASN ALA ALA ASN THR VAL SEQRES 7 D 118 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 D 118 VAL TYR TYR CYS ALA ALA ARG ARG LEU PRO ILE GLY ASP SEQRES 9 D 118 TYR THR ASP TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 10 D 118 SER HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HET NAG A 507 14 HET NAG A 508 14 HET NAG A 509 14 HET NAG C 501 14 HET NAG C 502 14 HET NAG C 503 14 HET NAG C 504 14 HET NAG C 505 14 HET NAG C 506 14 HET NAG C 507 14 HET NAG C 508 14 HET NAG C 509 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 18(C8 H15 N O6) FORMUL 23 HOH *81(H2 O) HELIX 1 AA1 ASN A 98 LYS A 117 1 20 HELIX 2 AA2 ARG A 335 GLY A 354 1 20 HELIX 3 AA3 SER A 387 PHE A 391 5 5 HELIX 4 AA4 ASP A 474 SER A 481 1 8 HELIX 5 AA5 ILE B 28 ILE B 31 5 4 HELIX 6 AA6 ASN B 73 ALA B 75 5 3 HELIX 7 AA7 LYS B 86 THR B 90 5 5 HELIX 8 AA8 ASN C 98 LEU C 116 1 19 HELIX 9 AA9 ARG C 335 GLY C 354 1 20 HELIX 10 AB1 ASP C 368 THR C 373 1 6 HELIX 11 AB2 SER C 387 PHE C 391 5 5 HELIX 12 AB3 ASP C 474 TYR C 484 1 11 HELIX 13 AB4 ILE D 28 ILE D 31 5 4 HELIX 14 AB5 LYS D 86 THR D 90 5 5 SHEET 1 AA110 LYS A 46 GLU A 47 0 SHEET 2 AA110 TYR A 486 LYS A 490 -1 O LYS A 490 N LYS A 46 SHEET 3 AA110 PHE A 223 CYS A 228 -1 N ALA A 224 O VAL A 489 SHEET 4 AA110 VAL A 242 VAL A 245 -1 O VAL A 245 N ILE A 225 SHEET 5 AA110 VAL A 84 LEU A 86 -1 N VAL A 84 O THR A 244 SHEET 6 AA110 VAL C 84 LEU C 86 -1 O VAL C 85 N VAL A 85 SHEET 7 AA110 VAL C 242 VAL C 245 -1 O VAL C 242 N LEU C 86 SHEET 8 AA110 PHE C 223 CYS C 228 -1 N ILE C 225 O VAL C 245 SHEET 9 AA110 TYR C 486 LYS C 490 -1 O LYS C 487 N LEU C 226 SHEET 10 AA110 LYS C 46 GLU C 47 -1 N LYS C 46 O LYS C 490 SHEET 1 AA2 2 PHE A 53 ALA A 55 0 SHEET 2 AA2 2 HIS A 216 CYS A 218 -1 O CYS A 218 N PHE A 53 SHEET 1 AA3 2 GLU A 91 ASN A 94 0 SHEET 2 AA3 2 THR A 236 CYS A 239 -1 O CYS A 239 N GLU A 91 SHEET 1 AA4 2 VAL A 120 LYS A 121 0 SHEET 2 AA4 2 ILE A 201 THR A 202 -1 O ILE A 201 N LYS A 121 SHEET 1 AA5 7 LEU A 259 LEU A 261 0 SHEET 2 AA5 7 ARG A 444 ARG A 456 -1 O THR A 450 N LEU A 260 SHEET 3 AA5 7 ILE A 284 THR A 297 -1 N VAL A 292 O ILE A 449 SHEET 4 AA5 7 HIS A 330 SER A 334 -1 O HIS A 330 N THR A 297 SHEET 5 AA5 7 THR A 413 LYS A 421 -1 O ILE A 414 N ILE A 333 SHEET 6 AA5 7 GLU A 381 CYS A 385 -1 N TYR A 384 O ARG A 419 SHEET 7 AA5 7 HIS A 374 CYS A 378 -1 N CYS A 378 O GLU A 381 SHEET 1 AA6 6 VAL A 271 ARG A 273 0 SHEET 2 AA6 6 ILE A 284 THR A 297 -1 O GLN A 287 N VAL A 271 SHEET 3 AA6 6 ARG A 444 ARG A 456 -1 O ILE A 449 N VAL A 292 SHEET 4 AA6 6 SER A 465 PRO A 470 -1 O ARG A 469 N THR A 455 SHEET 5 AA6 6 THR A 358 PHE A 361 1 N ILE A 360 O PHE A 468 SHEET 6 AA6 6 SER A 393 THR A 394 -1 O SER A 393 N PHE A 361 SHEET 1 AA7 4 VAL B 2 SER B 7 0 SHEET 2 AA7 4 LEU B 18 GLY B 26 -1 O SER B 21 N SER B 7 SHEET 3 AA7 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA7 4 PHE B 67 ASP B 72 -1 N ASP B 72 O THR B 77 SHEET 1 AA8 6 LEU B 11 GLN B 13 0 SHEET 2 AA8 6 THR B 112 SER B 117 1 O SER B 117 N VAL B 12 SHEET 3 AA8 6 ALA B 91 ARG B 98 -1 N ALA B 91 O VAL B 114 SHEET 4 AA8 6 ALA B 33 GLN B 39 -1 N GLN B 39 O VAL B 92 SHEET 5 AA8 6 ASP B 46 SER B 52 -1 O VAL B 48 N TRP B 36 SHEET 6 AA8 6 THR B 57 TYR B 59 -1 O TYR B 58 N ARG B 50 SHEET 1 AA9 4 LEU B 11 GLN B 13 0 SHEET 2 AA9 4 THR B 112 SER B 117 1 O SER B 117 N VAL B 12 SHEET 3 AA9 4 ALA B 91 ARG B 98 -1 N ALA B 91 O VAL B 114 SHEET 4 AA9 4 ASP B 107 TRP B 108 -1 N ASP B 107 O ALA B 97 SHEET 1 AB1 3 VAL C 75 PRO C 76 0 SHEET 2 AB1 3 PHE C 53 SER C 56 1 N CYS C 54 O VAL C 75 SHEET 3 AB1 3 HIS C 216 CYS C 218 -1 O HIS C 216 N ALA C 55 SHEET 1 AB2 2 GLU C 91 ASN C 94 0 SHEET 2 AB2 2 THR C 236 CYS C 239 -1 O GLY C 237 N PHE C 93 SHEET 1 AB3 2 VAL C 120 LEU C 122 0 SHEET 2 AB3 2 VAL C 200 THR C 202 -1 O ILE C 201 N LYS C 121 SHEET 1 AB4 7 LEU C 259 LEU C 261 0 SHEET 2 AB4 7 ARG C 444 ASP C 457 -1 O GLY C 451 N LEU C 260 SHEET 3 AB4 7 ILE C 284 THR C 297 -1 N VAL C 286 O LEU C 452 SHEET 4 AB4 7 HIS C 330 SER C 334 -1 O ASN C 332 N ASN C 295 SHEET 5 AB4 7 THR C 413 LYS C 421 -1 O ILE C 414 N ILE C 333 SHEET 6 AB4 7 PHE C 382 CYS C 385 -1 N PHE C 382 O LYS C 421 SHEET 7 AB4 7 HIS C 374 ASN C 377 -1 N PHE C 376 O PHE C 383 SHEET 1 AB5 6 VAL C 271 ARG C 273 0 SHEET 2 AB5 6 ILE C 284 THR C 297 -1 O GLN C 287 N VAL C 271 SHEET 3 AB5 6 ARG C 444 ASP C 457 -1 O LEU C 452 N VAL C 286 SHEET 4 AB5 6 SER C 465 PRO C 470 -1 O ARG C 469 N THR C 455 SHEET 5 AB5 6 THR C 358 PHE C 361 1 N ILE C 360 O GLU C 466 SHEET 6 AB5 6 SER C 393 TRP C 395 -1 O TRP C 395 N ILE C 359 SHEET 1 AB6 4 VAL D 2 SER D 7 0 SHEET 2 AB6 4 LEU D 18 GLY D 26 -1 O SER D 25 N GLN D 3 SHEET 3 AB6 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 AB6 4 PHE D 67 ASP D 72 -1 N ASP D 72 O THR D 77 SHEET 1 AB7 6 LEU D 11 GLN D 13 0 SHEET 2 AB7 6 THR D 112 SER D 117 1 O THR D 115 N VAL D 12 SHEET 3 AB7 6 ALA D 91 ARG D 98 -1 N TYR D 93 O THR D 112 SHEET 4 AB7 6 ALA D 33 GLN D 39 -1 N GLN D 39 O VAL D 92 SHEET 5 AB7 6 ASP D 46 SER D 52 -1 O ALA D 49 N TRP D 36 SHEET 6 AB7 6 THR D 57 TYR D 59 -1 O TYR D 58 N ARG D 50 SHEET 1 AB8 4 LEU D 11 GLN D 13 0 SHEET 2 AB8 4 THR D 112 SER D 117 1 O THR D 115 N VAL D 12 SHEET 3 AB8 4 ALA D 91 ARG D 98 -1 N TYR D 93 O THR D 112 SHEET 4 AB8 4 ASP D 107 TRP D 108 -1 O ASP D 107 N ALA D 97 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 3 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 4 CYS A 228 CYS A 239 1555 1555 2.03 SSBOND 5 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 6 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 7 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 8 CYS B 22 CYS B 95 1555 1555 2.04 SSBOND 9 CYS C 54 CYS C 74 1555 1555 2.03 SSBOND 10 CYS C 119 CYS C 205 1555 1555 2.03 SSBOND 11 CYS C 218 CYS C 247 1555 1555 2.03 SSBOND 12 CYS C 228 CYS C 239 1555 1555 2.03 SSBOND 13 CYS C 296 CYS C 331 1555 1555 2.03 SSBOND 14 CYS C 378 CYS C 445 1555 1555 2.03 SSBOND 15 CYS C 385 CYS C 418 1555 1555 2.03 SSBOND 16 CYS D 22 CYS D 95 1555 1555 2.03 LINK ND2 ASN A 88 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 234 C1 NAG A 507 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG A 509 1555 1555 1.44 LINK ND2 ASN A 262 C1 NAG A 506 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 508 1555 1555 1.44 LINK ND2 ASN A 295 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 339 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 386 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN C 234 C1 NAG C 503 1555 1555 1.44 LINK ND2 ASN C 241 C1 NAG C 504 1555 1555 1.44 LINK ND2 ASN C 262 C1 NAG C 506 1555 1555 1.44 LINK ND2 ASN C 276 C1 NAG C 508 1555 1555 1.44 LINK ND2 ASN C 289 C1 NAG C 509 1555 1555 1.44 LINK ND2 ASN C 295 C1 NAG C 501 1555 1555 1.44 LINK ND2 ASN C 339 C1 NAG C 502 1555 1555 1.44 LINK ND2 ASN C 386 C1 NAG C 507 1555 1555 1.44 LINK ND2 ASN C 448 C1 NAG C 505 1555 1555 1.43 CRYST1 121.077 87.403 91.581 90.00 109.12 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008259 0.000000 0.002864 0.00000 SCALE2 0.000000 0.011441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011557 0.00000