HEADER LIGASE 27-JUN-21 7R8Q TITLE CLOSED FORM OF SAOUHSC_02373 IN COMPLEX WITH ADP, CITRATE, MG2+ AND TITLE 2 NA+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-GRASP DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN NCTC 8325 / PS SOURCE 3 47); SOURCE 4 ORGANISM_TAXID: 93061; SOURCE 5 STRAIN: NCTC 8325 / PS 47; SOURCE 6 GENE: SAOUHSC_02373; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ATP-GRASP SUPERFAMILY, L-AMINO ACID LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.L.PEDERICK,J.B.BRUNING REVDAT 3 18-OCT-23 7R8Q 1 REMARK REVDAT 2 05-OCT-22 7R8Q 1 JRNL REVDAT 1 14-SEP-22 7R8Q 0 JRNL AUTH J.L.PEDERICK,A.J.HORSFALL,B.JOVCEVSKI,J.KLOSE,A.D.ABELL, JRNL AUTH 2 T.L.PUKALA,J.B.BRUNING JRNL TITL DISCOVERY OF AN ʟ-AMINO ACID LIGASE IMPLICATED IN JRNL TITL 2 STAPHYLOCOCCAL SULFUR AMINO ACID METABOLISM. JRNL REF J.BIOL.CHEM. V. 298 02392 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35988643 JRNL DOI 10.1016/J.JBC.2022.102392 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 64435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 3389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8900 - 5.7620 0.99 2648 152 0.1635 0.1641 REMARK 3 2 5.7620 - 4.5762 1.00 2592 150 0.1409 0.1774 REMARK 3 3 4.5762 - 3.9985 0.99 2555 163 0.1384 0.1654 REMARK 3 4 3.9985 - 3.6333 0.99 2600 127 0.1585 0.1832 REMARK 3 5 3.6333 - 3.3731 0.99 2575 129 0.1653 0.1913 REMARK 3 6 3.3731 - 3.1743 0.99 2593 131 0.1922 0.2182 REMARK 3 7 3.1743 - 3.0154 0.99 2540 157 0.2166 0.2430 REMARK 3 8 3.0154 - 2.8842 0.99 2545 142 0.2195 0.2635 REMARK 3 9 2.8842 - 2.7732 0.99 2549 129 0.2288 0.2766 REMARK 3 10 2.7732 - 2.6775 0.99 2552 142 0.2235 0.2810 REMARK 3 11 2.6775 - 2.5938 0.99 2564 124 0.2237 0.2277 REMARK 3 12 2.5938 - 2.5197 0.99 2509 140 0.2158 0.2587 REMARK 3 13 2.5197 - 2.4534 0.98 2546 153 0.2167 0.2462 REMARK 3 14 2.4534 - 2.3935 0.98 2481 159 0.2245 0.2758 REMARK 3 15 2.3935 - 2.3391 0.98 2557 131 0.2206 0.2753 REMARK 3 16 2.3391 - 2.2894 0.98 2528 146 0.2211 0.2493 REMARK 3 17 2.2894 - 2.2436 0.98 2544 141 0.2426 0.2775 REMARK 3 18 2.2436 - 2.2013 0.98 2508 134 0.2466 0.3234 REMARK 3 19 2.2013 - 2.1619 0.98 2494 142 0.2490 0.3052 REMARK 3 20 2.1619 - 2.1253 0.98 2526 130 0.2612 0.3001 REMARK 3 21 2.1253 - 2.0910 0.98 2494 158 0.2739 0.3265 REMARK 3 22 2.0910 - 2.0589 0.98 2521 136 0.2904 0.3275 REMARK 3 23 2.0589 - 2.0286 0.98 2514 126 0.3092 0.2935 REMARK 3 24 2.0286 - 2.0000 0.98 2511 147 0.3142 0.3878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7R8P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.93400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.40600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.93400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.40600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 HIS A 396 REMARK 465 TYR A 397 REMARK 465 MET B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 5 REMARK 465 ASN B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 9 CG OD1 ND2 REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 GLU A 385 CG CD OE1 OE2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 GLN B 73 CG CD OE1 NE2 REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 470 GLN B 196 CG CD OE1 NE2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 248 CG CD CE NZ REMARK 470 ASN B 260 CG OD1 ND2 REMARK 470 GLU B 263 CG CD OE1 OE2 REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 ARG B 388 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 -113.07 59.19 REMARK 500 ASP A 176 -155.27 -108.47 REMARK 500 ASP A 301 119.66 -163.36 REMARK 500 ARG A 305 169.10 177.75 REMARK 500 LEU B 34 77.27 -152.10 REMARK 500 ASN B 53 -113.02 58.34 REMARK 500 ASP B 176 -155.96 -112.04 REMARK 500 ASN B 260 44.33 -81.17 REMARK 500 ARG B 305 172.88 176.62 REMARK 500 ASP B 365 18.91 56.08 REMARK 500 HIS B 396 71.96 -112.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 246 O REMARK 620 2 THR A 246 OG1 78.0 REMARK 620 3 HOH A 532 O 168.9 96.1 REMARK 620 4 HOH A 560 O 85.3 90.9 85.4 REMARK 620 5 HOH A 649 O 95.3 86.7 93.8 177.4 REMARK 620 6 HOH A 721 O 89.8 167.8 95.9 87.7 94.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 288 OD2 REMARK 620 2 ASP A 301 OD2 98.9 REMARK 620 3 CIT A 401 O2 90.7 89.2 REMARK 620 4 ADP A 402 O2B 169.4 91.6 89.8 REMARK 620 5 ADP A 402 O1A 97.7 95.2 169.7 80.8 REMARK 620 6 HOH A 590 O 81.0 179.2 91.6 88.5 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD2 REMARK 620 2 ASN A 303 OD1 87.5 REMARK 620 3 CIT A 401 O2 69.2 97.5 REMARK 620 4 CIT A 401 O6 148.9 101.3 80.0 REMARK 620 5 ADP A 402 O2B 70.1 154.5 63.6 92.6 REMARK 620 6 ADP A 402 O3B 84.7 137.3 118.4 106.9 55.0 REMARK 620 7 HOH A 520 O 111.2 87.0 175.5 99.2 112.0 57.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 LEU A 302 O 89.2 REMARK 620 3 ASN A 303 OD1 91.5 94.3 REMARK 620 4 HOH A 520 O 97.4 173.3 84.3 REMARK 620 5 HOH A 629 O 92.0 89.7 174.7 91.3 REMARK 620 6 HOH A 661 O 176.1 90.2 92.3 83.4 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 246 O REMARK 620 2 THR B 246 OG1 74.4 REMARK 620 3 HOH B 534 O 92.9 82.6 REMARK 620 4 HOH B 586 O 158.7 94.6 103.9 REMARK 620 5 HOH B 637 O 79.0 93.7 171.7 83.7 REMARK 620 6 HOH B 689 O 102.1 175.4 100.7 87.7 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 288 OD2 REMARK 620 2 ASP B 301 OD2 95.5 REMARK 620 3 CIT B 401 O1 90.6 88.6 REMARK 620 4 ADP B 402 O3B 173.8 90.3 87.3 REMARK 620 5 ADP B 402 O2A 101.5 97.6 165.8 79.9 REMARK 620 6 HOH B 512 O 85.9 173.5 85.0 88.1 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 301 OD1 REMARK 620 2 LEU B 302 O 89.0 REMARK 620 3 ASN B 303 OD1 88.4 94.0 REMARK 620 4 HOH B 517 O 89.4 170.9 77.0 REMARK 620 5 HOH B 546 O 175.4 86.5 91.0 94.8 REMARK 620 6 HOH B 553 O 92.8 88.5 177.3 100.5 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 301 OD2 REMARK 620 2 ASN B 303 OD1 89.2 REMARK 620 3 CIT B 401 O1 71.1 100.0 REMARK 620 4 CIT B 401 O5 152.8 96.7 81.7 REMARK 620 5 ADP B 402 O1B 86.2 132.0 123.1 108.6 REMARK 620 6 ADP B 402 O3B 73.8 161.7 68.3 95.5 55.2 REMARK 620 7 HOH B 517 O 109.6 80.0 179.3 97.6 57.1 111.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7R8P RELATED DB: PDB REMARK 900 STRUCTURE OF SAME PROTEIN IN AN OPEN FORM COMPLEXED WITH ADP DBREF 7R8Q A 1 397 UNP Q2FWC5 Q2FWC5_STAA8 1 397 DBREF 7R8Q B 1 397 UNP Q2FWC5 Q2FWC5_STAA8 1 397 SEQADV 7R8Q MET A -8 UNP Q2FWC5 INITIATING METHIONINE SEQADV 7R8Q HIS A -7 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A -6 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A -5 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A -4 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A -3 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A -2 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A -1 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS A 0 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q MET B -8 UNP Q2FWC5 INITIATING METHIONINE SEQADV 7R8Q HIS B -7 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B -6 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B -5 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B -4 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B -3 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B -2 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B -1 UNP Q2FWC5 EXPRESSION TAG SEQADV 7R8Q HIS B 0 UNP Q2FWC5 EXPRESSION TAG SEQRES 1 A 406 MET HIS HIS HIS HIS HIS HIS HIS HIS MET THR ASN ASN SEQRES 2 A 406 GLY ASN GLU PRO ASN LEU THR LEU SER ASP LEU TYR ASP SEQRES 3 A 406 LYS ASP VAL VAL TYR THR SER ARG PRO SER TYR ILE SER SEQRES 4 A 406 ASN PRO TRP LEU LYS PRO ASP GLU HIS GLN SER ASN PHE SEQRES 5 A 406 LEU THR GLY ARG GLU LEU LEU ILE ALA ASN GLN LEU PRO SEQRES 6 A 406 VAL ILE VAL HIS GLU ALA SER ALA THR ASP LYS LEU HIS SEQRES 7 A 406 GLN LEU PHE GLN VAL ILE GLY LYS GLU VAL PRO ASN SER SEQRES 8 A 406 ILE TYR THR PHE ASN ASN GLN GLN SER TYR GLU ASN LEU SEQRES 9 A 406 ILE LYS GLN LEU ALA HIS LYS GLU ASN LYS LYS ILE TYR SEQRES 10 A 406 PHE GLN TYR ILE HIS ASP GLU THR ILE LEU ASN GLN GLN SEQRES 11 A 406 TYR TYR ALA LEU ASP LYS THR LEU PHE VAL ALA LEU ASN SEQRES 12 A 406 ASN LYS ALA ARG ILE PRO GLU TRP THR ASN GLY LYS PHE SEQRES 13 A 406 LEU PRO LYS ARG LYS VAL VAL LYS ILE GLU GLN PHE GLU SEQRES 14 A 406 ASN GLU ILE LYS ASN TRP GLU PHE PRO LEU VAL ILE LYS SEQRES 15 A 406 PRO GLY ASP ASP LEU PRO THR ALA GLY GLY TYR GLY VAL SEQRES 16 A 406 MET ILE CYS TYR HIS ASP ALA ASP LEU GLN LYS ALA ILE SEQRES 17 A 406 THR ARG ILE LYS GLU ALA THR ALA GLU THR ASN SER LEU SEQRES 18 A 406 ILE ILE GLU GLN LYS ILE GLU GLU LYS ALA ASN TYR CYS SEQRES 19 A 406 VAL GLN PHE ALA TYR SER GLU SER LEU GLY ILE GLN TYR SEQRES 20 A 406 LEU GLY ALA ALA THR GLN LEU THR ASP LYS TYR GLY PHE SEQRES 21 A 406 TYR ASN GLY ASN GLU ASN THR THR ASN VAL PRO GLU HIS SEQRES 22 A 406 VAL ILE GLU ALA GLY ARG GLN ILE MET GLU ASN GLY VAL SEQRES 23 A 406 ASN GLN GLY PHE PHE GLY VAL ALA GLY PHE ASP LEU LEU SEQRES 24 A 406 VAL ASP GLU ASP ASP ASN VAL TYR ALA ILE ASP LEU ASN SEQRES 25 A 406 PHE ARG GLN ASN GLY SER THR SER MET LEU LEU LEU ALA SEQRES 26 A 406 ASN GLU LEU ASN SER GLY TYR GLN LYS PHE TYR SER TYR SEQRES 27 A 406 HIS SER LYS GLY ASP ASN THR HIS PHE PHE ASN THR ILE SEQRES 28 A 406 LEU LYS TYR VAL LYS GLU GLY SER LEU TYR PRO LEU SER SEQRES 29 A 406 TYR TYR ASP GLY ASP TRP TYR GLY GLU ASP LYS VAL LYS SEQRES 30 A 406 SER ARG PHE GLY CYS ILE TRP HIS GLY ASP SER LYS GLU SEQRES 31 A 406 THR VAL LEU GLU ASN GLU ARG ALA PHE LEU ALA GLU LEU SEQRES 32 A 406 GLU HIS TYR SEQRES 1 B 406 MET HIS HIS HIS HIS HIS HIS HIS HIS MET THR ASN ASN SEQRES 2 B 406 GLY ASN GLU PRO ASN LEU THR LEU SER ASP LEU TYR ASP SEQRES 3 B 406 LYS ASP VAL VAL TYR THR SER ARG PRO SER TYR ILE SER SEQRES 4 B 406 ASN PRO TRP LEU LYS PRO ASP GLU HIS GLN SER ASN PHE SEQRES 5 B 406 LEU THR GLY ARG GLU LEU LEU ILE ALA ASN GLN LEU PRO SEQRES 6 B 406 VAL ILE VAL HIS GLU ALA SER ALA THR ASP LYS LEU HIS SEQRES 7 B 406 GLN LEU PHE GLN VAL ILE GLY LYS GLU VAL PRO ASN SER SEQRES 8 B 406 ILE TYR THR PHE ASN ASN GLN GLN SER TYR GLU ASN LEU SEQRES 9 B 406 ILE LYS GLN LEU ALA HIS LYS GLU ASN LYS LYS ILE TYR SEQRES 10 B 406 PHE GLN TYR ILE HIS ASP GLU THR ILE LEU ASN GLN GLN SEQRES 11 B 406 TYR TYR ALA LEU ASP LYS THR LEU PHE VAL ALA LEU ASN SEQRES 12 B 406 ASN LYS ALA ARG ILE PRO GLU TRP THR ASN GLY LYS PHE SEQRES 13 B 406 LEU PRO LYS ARG LYS VAL VAL LYS ILE GLU GLN PHE GLU SEQRES 14 B 406 ASN GLU ILE LYS ASN TRP GLU PHE PRO LEU VAL ILE LYS SEQRES 15 B 406 PRO GLY ASP ASP LEU PRO THR ALA GLY GLY TYR GLY VAL SEQRES 16 B 406 MET ILE CYS TYR HIS ASP ALA ASP LEU GLN LYS ALA ILE SEQRES 17 B 406 THR ARG ILE LYS GLU ALA THR ALA GLU THR ASN SER LEU SEQRES 18 B 406 ILE ILE GLU GLN LYS ILE GLU GLU LYS ALA ASN TYR CYS SEQRES 19 B 406 VAL GLN PHE ALA TYR SER GLU SER LEU GLY ILE GLN TYR SEQRES 20 B 406 LEU GLY ALA ALA THR GLN LEU THR ASP LYS TYR GLY PHE SEQRES 21 B 406 TYR ASN GLY ASN GLU ASN THR THR ASN VAL PRO GLU HIS SEQRES 22 B 406 VAL ILE GLU ALA GLY ARG GLN ILE MET GLU ASN GLY VAL SEQRES 23 B 406 ASN GLN GLY PHE PHE GLY VAL ALA GLY PHE ASP LEU LEU SEQRES 24 B 406 VAL ASP GLU ASP ASP ASN VAL TYR ALA ILE ASP LEU ASN SEQRES 25 B 406 PHE ARG GLN ASN GLY SER THR SER MET LEU LEU LEU ALA SEQRES 26 B 406 ASN GLU LEU ASN SER GLY TYR GLN LYS PHE TYR SER TYR SEQRES 27 B 406 HIS SER LYS GLY ASP ASN THR HIS PHE PHE ASN THR ILE SEQRES 28 B 406 LEU LYS TYR VAL LYS GLU GLY SER LEU TYR PRO LEU SER SEQRES 29 B 406 TYR TYR ASP GLY ASP TRP TYR GLY GLU ASP LYS VAL LYS SEQRES 30 B 406 SER ARG PHE GLY CYS ILE TRP HIS GLY ASP SER LYS GLU SEQRES 31 B 406 THR VAL LEU GLU ASN GLU ARG ALA PHE LEU ALA GLU LEU SEQRES 32 B 406 GLU HIS TYR HET CIT A 401 13 HET ADP A 402 27 HET MG A 403 1 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HET CIT B 401 13 HET ADP B 402 27 HET CIT B 403 13 HET CIT B 404 13 HET MG B 405 1 HET NA B 406 1 HET NA B 407 1 HET NA B 408 1 HETNAM CIT CITRIC ACID HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 CIT 4(C6 H8 O7) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 MG 2(MG 2+) FORMUL 6 NA 6(NA 1+) FORMUL 17 HOH *441(H2 O) HELIX 1 AA1 THR A 11 LEU A 15 5 5 HELIX 2 AA2 ASP A 37 THR A 45 1 9 HELIX 3 AA3 GLU A 48 ASN A 53 1 6 HELIX 4 AA4 ALA A 62 ALA A 64 5 3 HELIX 5 AA5 THR A 65 ILE A 75 1 11 HELIX 6 AA6 ASN A 88 LYS A 102 1 15 HELIX 7 AA7 ASN A 119 TYR A 123 5 5 HELIX 8 AA8 ASP A 126 ASN A 134 1 9 HELIX 9 AA9 ASN A 135 ALA A 137 5 3 HELIX 10 AB1 ARG A 138 THR A 143 1 6 HELIX 11 AB2 GLN A 158 LYS A 164 1 7 HELIX 12 AB3 HIS A 191 ALA A 205 1 15 HELIX 13 AB4 THR A 206 THR A 209 5 4 HELIX 14 AB5 PRO A 262 ASN A 278 1 17 HELIX 15 AB6 ASN A 307 LEU A 315 1 9 HELIX 16 AB7 ALA A 316 LEU A 319 5 4 HELIX 17 AB8 ASP A 334 GLU A 348 1 15 HELIX 18 AB9 ASP A 358 GLY A 363 5 6 HELIX 19 AC1 SER A 379 LEU A 394 1 16 HELIX 20 AC2 THR B 11 LEU B 15 5 5 HELIX 21 AC3 ASP B 37 THR B 45 1 9 HELIX 22 AC4 GLU B 48 ASN B 53 1 6 HELIX 23 AC5 ALA B 62 ALA B 64 5 3 HELIX 24 AC6 THR B 65 ILE B 75 1 11 HELIX 25 AC7 ASN B 88 LYS B 102 1 15 HELIX 26 AC8 ASN B 119 TYR B 123 5 5 HELIX 27 AC9 ASP B 126 ASN B 134 1 9 HELIX 28 AD1 ASN B 135 ALA B 137 5 3 HELIX 29 AD2 ARG B 138 THR B 143 1 6 HELIX 30 AD3 GLN B 158 ILE B 163 1 6 HELIX 31 AD4 LYS B 164 TRP B 166 5 3 HELIX 32 AD5 HIS B 191 ALA B 205 1 15 HELIX 33 AD6 PRO B 262 GLN B 279 1 18 HELIX 34 AD7 ASN B 307 LEU B 315 1 9 HELIX 35 AD8 ALA B 316 LEU B 319 5 4 HELIX 36 AD9 ASP B 334 GLY B 349 1 16 HELIX 37 AE1 ASP B 358 GLY B 363 5 6 HELIX 38 AE2 SER B 379 GLU B 395 1 17 SHEET 1 AA1 2 VAL A 20 THR A 23 0 SHEET 2 AA1 2 LYS A 106 PHE A 109 1 O TYR A 108 N VAL A 21 SHEET 1 AA2 2 VAL A 57 HIS A 60 0 SHEET 2 AA2 2 ILE A 83 PHE A 86 1 O TYR A 84 N VAL A 59 SHEET 1 AA3 4 ARG A 151 LYS A 155 0 SHEET 2 AA3 4 SER A 211 GLN A 216 -1 O ILE A 214 N LYS A 152 SHEET 3 AA3 4 LEU A 170 PRO A 174 -1 N LYS A 173 O ILE A 213 SHEET 4 AA3 4 MET A 187 CYS A 189 -1 O CYS A 189 N LEU A 170 SHEET 1 AA4 8 VAL A 297 ASN A 303 0 SHEET 2 AA4 8 GLY A 283 VAL A 291 -1 N ASP A 288 O ASP A 301 SHEET 3 AA4 8 ALA A 222 SER A 231 -1 N VAL A 226 O PHE A 287 SHEET 4 AA4 8 GLY A 235 THR A 246 -1 O ALA A 242 N CYS A 225 SHEET 5 AA4 8 TYR A 252 ASN A 257 -1 O GLY A 254 N LEU A 245 SHEET 6 AA4 8 TYR A 323 HIS A 330 -1 O PHE A 326 N ASN A 255 SHEET 7 AA4 8 ARG A 370 GLY A 377 -1 O TRP A 375 N LYS A 325 SHEET 8 AA4 8 LEU A 351 TYR A 357 -1 N TYR A 357 O ARG A 370 SHEET 1 AA5 2 VAL B 20 THR B 23 0 SHEET 2 AA5 2 LYS B 106 PHE B 109 1 O TYR B 108 N VAL B 21 SHEET 1 AA6 2 VAL B 57 HIS B 60 0 SHEET 2 AA6 2 ILE B 83 PHE B 86 1 O TYR B 84 N VAL B 59 SHEET 1 AA7 4 ARG B 151 LYS B 155 0 SHEET 2 AA7 4 SER B 211 GLN B 216 -1 O ILE B 214 N LYS B 152 SHEET 3 AA7 4 LEU B 170 PRO B 174 -1 N LYS B 173 O ILE B 213 SHEET 4 AA7 4 MET B 187 CYS B 189 -1 O MET B 187 N ILE B 172 SHEET 1 AA8 8 VAL B 297 ASN B 303 0 SHEET 2 AA8 8 GLY B 283 VAL B 291 -1 N GLY B 286 O ASN B 303 SHEET 3 AA8 8 ALA B 222 SER B 231 -1 N VAL B 226 O PHE B 287 SHEET 4 AA8 8 GLY B 235 THR B 246 -1 O GLY B 235 N SER B 231 SHEET 5 AA8 8 TYR B 252 ASN B 257 -1 O ASN B 253 N LEU B 245 SHEET 6 AA8 8 TYR B 323 HIS B 330 -1 O PHE B 326 N ASN B 255 SHEET 7 AA8 8 ARG B 370 GLY B 377 -1 O TRP B 375 N LYS B 325 SHEET 8 AA8 8 LEU B 351 TYR B 357 -1 N LEU B 354 O GLY B 372 LINK O THR A 246 NA NA A 406 1555 1555 2.46 LINK OG1 THR A 246 NA NA A 406 1555 1555 2.44 LINK OD2 ASP A 288 MG MG A 403 1555 1555 2.03 LINK OD2 ASP A 301 MG MG A 403 1555 1555 2.08 LINK OD2 ASP A 301 NA NA A 404 1555 1555 2.36 LINK OD1 ASP A 301 NA NA A 405 1555 1555 2.29 LINK O LEU A 302 NA NA A 405 1555 1555 2.68 LINK OD1 ASN A 303 NA NA A 404 1555 1555 2.35 LINK OD1 ASN A 303 NA NA A 405 1555 1555 2.44 LINK O2 CIT A 401 MG MG A 403 1555 1555 2.11 LINK O2 CIT A 401 NA NA A 404 1555 1555 2.79 LINK O6 CIT A 401 NA NA A 404 1555 1555 2.34 LINK O2B ADP A 402 MG MG A 403 1555 1555 2.01 LINK O1A ADP A 402 MG MG A 403 1555 1555 1.98 LINK O2B ADP A 402 NA NA A 404 1555 1555 2.73 LINK O3B ADP A 402 NA NA A 404 1555 1555 2.74 LINK MG MG A 403 O HOH A 590 1555 1555 2.12 LINK NA NA A 404 O HOH A 520 1555 1555 2.42 LINK NA NA A 405 O HOH A 520 1555 1555 2.46 LINK NA NA A 405 O HOH A 629 1555 1555 2.42 LINK NA NA A 405 O HOH A 661 1555 1555 2.40 LINK NA NA A 406 O HOH A 532 1555 1555 2.46 LINK NA NA A 406 O HOH A 560 1555 1555 2.40 LINK NA NA A 406 O HOH A 649 1555 1555 2.39 LINK NA NA A 406 O HOH A 721 1555 1555 2.45 LINK O THR B 246 NA NA B 408 1555 1555 2.57 LINK OG1 THR B 246 NA NA B 408 1555 1555 2.47 LINK OD2 ASP B 288 MG MG B 405 1555 1555 1.91 LINK OD2 ASP B 301 MG MG B 405 1555 1555 2.10 LINK OD1 ASP B 301 NA NA B 406 1555 1555 2.35 LINK OD2 ASP B 301 NA NA B 407 1555 1555 2.40 LINK O LEU B 302 NA NA B 406 1555 1555 2.62 LINK OD1 ASN B 303 NA NA B 406 1555 1555 2.54 LINK OD1 ASN B 303 NA NA B 407 1555 1555 2.39 LINK O1 CIT B 401 MG MG B 405 1555 1555 2.19 LINK O1 CIT B 401 NA NA B 407 1555 1555 2.72 LINK O5 CIT B 401 NA NA B 407 1555 1555 2.47 LINK O3B ADP B 402 MG MG B 405 1555 1555 2.12 LINK O2A ADP B 402 MG MG B 405 1555 1555 2.03 LINK O1B ADP B 402 NA NA B 407 1555 1555 2.86 LINK O3B ADP B 402 NA NA B 407 1555 1555 2.57 LINK MG MG B 405 O HOH B 512 1555 1555 2.13 LINK NA NA B 406 O HOH B 517 1555 1555 2.41 LINK NA NA B 406 O HOH B 546 1555 1555 2.43 LINK NA NA B 406 O HOH B 553 1555 1555 2.40 LINK NA NA B 407 O HOH B 517 1555 1555 2.40 LINK NA NA B 408 O HOH B 534 1555 1555 2.39 LINK NA NA B 408 O HOH B 586 1555 1555 2.37 LINK NA NA B 408 O HOH B 637 1555 1555 2.45 LINK NA NA B 408 O HOH B 689 1555 1555 2.36 CISPEP 1 PHE A 168 PRO A 169 0 -1.95 CISPEP 2 PHE B 168 PRO B 169 0 1.86 CRYST1 145.868 82.812 107.782 90.00 131.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006856 0.000000 0.005972 0.00000 SCALE2 0.000000 0.012076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012305 0.00000