HEADER TRANSFERASE 27-JUN-21 7R8Y TITLE ANCESTRAL PROTEIN ANCTHEN OF PHOSPHOMETHYLPYRIMIDINE KINASES FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMETHYLPYRIMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.4.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANCESTRAL PROTEIN RECONSTRUCTION, 5-PHOSPHOHYDROXYMETHYL-2- KEYWDS 2 METHYLPYRIMIDINE KINASE, PHOSPHOMETHYLPYRIMIDINE KINASES FAMILY, KEYWDS 3 ENZYME EVOLUTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MUNOZ,P.MATURANA,F.GONZALEZ-ORDENES,P.CEA,V.CASTRO-FERNANDEZ REVDAT 2 18-OCT-23 7R8Y 1 REMARK REVDAT 1 29-JUN-22 7R8Y 0 JRNL AUTH S.MUNOZ,P.MATURANA,F.GONZALEZ-ORDENES,P.CEA, JRNL AUTH 2 V.CASTRO-FERNANDEZ JRNL TITL ANCESTRAL PROTEIN ANCTHEN OF PHOSPHOMETHYLPYRIMIDINE KINASES JRNL TITL 2 FAMILY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9600 - 5.0800 1.00 3137 153 0.2228 0.2389 REMARK 3 2 5.0800 - 4.0300 1.00 2954 171 0.2011 0.2252 REMARK 3 3 4.0300 - 3.5200 1.00 2972 115 0.2455 0.2638 REMARK 3 4 3.5200 - 3.2000 1.00 2886 167 0.3173 0.3465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.456 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.711 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3146 REMARK 3 ANGLE : 0.975 4281 REMARK 3 CHIRALITY : 0.064 534 REMARK 3 PLANARITY : 0.006 556 REMARK 3 DIHEDRAL : 15.216 1112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6852 -14.6937 36.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.7599 T22: 0.4148 REMARK 3 T33: 0.6474 T12: 0.0833 REMARK 3 T13: 0.2512 T23: 0.1154 REMARK 3 L TENSOR REMARK 3 L11: 0.2480 L22: 1.0131 REMARK 3 L33: 0.4298 L12: -0.3243 REMARK 3 L13: 0.0360 L23: 0.5822 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: 0.0276 S13: -0.4482 REMARK 3 S21: -0.3482 S22: -0.1699 S23: -0.0347 REMARK 3 S31: -0.0010 S32: 0.0415 S33: -0.0588 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0450 -8.7869 29.6103 REMARK 3 T TENSOR REMARK 3 T11: 0.7833 T22: 0.4172 REMARK 3 T33: 0.4782 T12: 0.0564 REMARK 3 T13: 0.1767 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.0912 L22: 0.3607 REMARK 3 L33: 0.4142 L12: -0.1196 REMARK 3 L13: 0.0897 L23: -0.0726 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.0507 S13: -0.3320 REMARK 3 S21: -0.2024 S22: -0.1104 S23: -0.1009 REMARK 3 S31: -0.4488 S32: -0.2052 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9306 -1.0598 29.6026 REMARK 3 T TENSOR REMARK 3 T11: 1.1042 T22: 0.2259 REMARK 3 T33: 0.2963 T12: 0.1476 REMARK 3 T13: 0.2438 T23: 0.2371 REMARK 3 L TENSOR REMARK 3 L11: 0.8293 L22: 0.3573 REMARK 3 L33: 0.9351 L12: 0.5658 REMARK 3 L13: -0.0542 L23: -0.2542 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: -0.2773 S13: 0.1399 REMARK 3 S21: -1.2403 S22: -0.3731 S23: 0.5781 REMARK 3 S31: -1.2540 S32: -0.3312 S33: -0.7318 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5656 1.1748 37.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.7470 T22: 0.3407 REMARK 3 T33: 0.6836 T12: 0.0129 REMARK 3 T13: 0.2463 T23: 0.1685 REMARK 3 L TENSOR REMARK 3 L11: 0.6625 L22: 0.1363 REMARK 3 L33: 0.7166 L12: -0.0726 REMARK 3 L13: -0.0399 L23: 0.3087 REMARK 3 S TENSOR REMARK 3 S11: -0.2910 S12: -0.1500 S13: -0.1261 REMARK 3 S21: -0.3670 S22: 0.3458 S23: -0.1854 REMARK 3 S31: -0.4420 S32: 0.0379 S33: 0.2369 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0408 8.4364 48.7830 REMARK 3 T TENSOR REMARK 3 T11: 0.7079 T22: 0.5379 REMARK 3 T33: 0.6968 T12: 0.0893 REMARK 3 T13: 0.1494 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.1509 L22: 0.2766 REMARK 3 L33: 0.4247 L12: 0.1913 REMARK 3 L13: 0.3331 L23: 0.1783 REMARK 3 S TENSOR REMARK 3 S11: -0.1734 S12: -0.4956 S13: 0.0497 REMARK 3 S21: -0.4388 S22: 0.0744 S23: 0.1615 REMARK 3 S31: -0.6882 S32: 0.0943 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4849 -5.2963 51.7357 REMARK 3 T TENSOR REMARK 3 T11: 0.5239 T22: 0.3851 REMARK 3 T33: 0.2454 T12: 0.1611 REMARK 3 T13: 0.0837 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 0.6660 L22: 0.9141 REMARK 3 L33: 0.5577 L12: 0.5914 REMARK 3 L13: 0.1317 L23: -0.6515 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.4014 S13: -0.1256 REMARK 3 S21: -0.2541 S22: -0.2088 S23: -0.0338 REMARK 3 S31: -0.3929 S32: -0.0264 S33: 0.0017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3078 -25.6048 34.1733 REMARK 3 T TENSOR REMARK 3 T11: 1.1061 T22: 0.4606 REMARK 3 T33: 0.8184 T12: 0.0939 REMARK 3 T13: 0.4487 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 0.7025 L22: 0.5592 REMARK 3 L33: 0.0999 L12: 0.6617 REMARK 3 L13: -0.1315 L23: -0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.6611 S12: 0.1944 S13: -0.3822 REMARK 3 S21: -0.2200 S22: 0.4775 S23: 0.2857 REMARK 3 S31: 0.5393 S32: -0.2304 S33: -0.0843 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9629 -25.9811 37.9925 REMARK 3 T TENSOR REMARK 3 T11: 1.1047 T22: 0.6531 REMARK 3 T33: 0.7579 T12: 0.2598 REMARK 3 T13: 0.4213 T23: 0.1200 REMARK 3 L TENSOR REMARK 3 L11: 0.5538 L22: 0.1595 REMARK 3 L33: 0.5594 L12: 0.1651 REMARK 3 L13: 0.4225 L23: 0.0708 REMARK 3 S TENSOR REMARK 3 S11: -0.6985 S12: -0.6331 S13: -0.3647 REMARK 3 S21: -0.0625 S22: 0.0006 S23: 0.4429 REMARK 3 S31: -0.2903 S32: -0.0352 S33: -0.1914 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0214 -20.0289 26.0857 REMARK 3 T TENSOR REMARK 3 T11: 1.2061 T22: 0.4257 REMARK 3 T33: 1.1405 T12: 0.1648 REMARK 3 T13: 0.4259 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 1.3275 L22: 0.3765 REMARK 3 L33: 1.1035 L12: -0.1705 REMARK 3 L13: 1.1915 L23: -0.2378 REMARK 3 S TENSOR REMARK 3 S11: -0.2592 S12: 0.8742 S13: -0.3331 REMARK 3 S21: -0.3382 S22: -0.1285 S23: -0.1369 REMARK 3 S31: -0.3544 S32: 0.6889 S33: -0.0291 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6539 -29.6720 33.1298 REMARK 3 T TENSOR REMARK 3 T11: 1.2315 T22: -0.1795 REMARK 3 T33: 0.5110 T12: 0.5717 REMARK 3 T13: 0.8255 T23: -0.6120 REMARK 3 L TENSOR REMARK 3 L11: 0.2874 L22: 0.3262 REMARK 3 L33: 0.3905 L12: 0.2615 REMARK 3 L13: 0.2876 L23: 0.0708 REMARK 3 S TENSOR REMARK 3 S11: -0.2130 S12: 0.4757 S13: -0.1532 REMARK 3 S21: 0.0016 S22: 0.8193 S23: -0.1302 REMARK 3 S31: -0.1671 S32: 0.4969 S33: 0.4322 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0840 -30.5561 27.0747 REMARK 3 T TENSOR REMARK 3 T11: 1.3776 T22: 0.6262 REMARK 3 T33: 0.9151 T12: 0.2191 REMARK 3 T13: 0.2595 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.0710 L22: 0.0176 REMARK 3 L33: 0.0523 L12: -0.0694 REMARK 3 L13: 0.0113 L23: 0.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: -0.0593 S13: 0.3180 REMARK 3 S21: -0.3145 S22: 0.6014 S23: -0.8876 REMARK 3 S31: 0.3675 S32: 0.6938 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0074 -36.2844 24.0905 REMARK 3 T TENSOR REMARK 3 T11: 1.1774 T22: 0.4664 REMARK 3 T33: 0.8301 T12: 0.1861 REMARK 3 T13: 0.4862 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 2.5063 L22: 0.5341 REMARK 3 L33: 0.1657 L12: 0.7742 REMARK 3 L13: 0.0459 L23: 0.0163 REMARK 3 S TENSOR REMARK 3 S11: -0.7755 S12: 0.3985 S13: 0.0923 REMARK 3 S21: 0.4013 S22: 0.4702 S23: -0.1527 REMARK 3 S31: 0.5226 S32: -0.1973 S33: -0.1839 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5586 -45.7620 16.4146 REMARK 3 T TENSOR REMARK 3 T11: 1.0211 T22: 0.4954 REMARK 3 T33: 1.0860 T12: 0.2960 REMARK 3 T13: 0.1581 T23: -0.2272 REMARK 3 L TENSOR REMARK 3 L11: 0.8642 L22: 0.7911 REMARK 3 L33: 0.1797 L12: -0.8172 REMARK 3 L13: 0.3453 L23: -0.2925 REMARK 3 S TENSOR REMARK 3 S11: 0.7344 S12: 0.3575 S13: -1.1454 REMARK 3 S21: 0.6086 S22: -0.0848 S23: 0.5327 REMARK 3 S31: 0.1895 S32: -0.4115 S33: 0.6999 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4904 -44.3553 23.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.9090 T22: 0.4601 REMARK 3 T33: 1.1090 T12: -0.0096 REMARK 3 T13: 0.1822 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: -0.0095 L22: 0.0466 REMARK 3 L33: 0.2792 L12: 0.0492 REMARK 3 L13: -0.0312 L23: -0.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.5388 S12: 0.6763 S13: -0.0175 REMARK 3 S21: 0.5210 S22: -0.6714 S23: 0.7485 REMARK 3 S31: -0.3617 S32: 0.6044 S33: -0.0065 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3224 -42.3265 34.5944 REMARK 3 T TENSOR REMARK 3 T11: 1.3915 T22: 0.5892 REMARK 3 T33: 0.9725 T12: 0.0477 REMARK 3 T13: 0.3858 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.0603 L22: 0.0563 REMARK 3 L33: 0.0552 L12: 0.0311 REMARK 3 L13: 0.0158 L23: 0.1164 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.1576 S13: -0.3726 REMARK 3 S21: -0.0562 S22: 0.1776 S23: 0.3121 REMARK 3 S31: 0.1729 S32: -0.0666 S33: 0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4506 -40.6998 36.6062 REMARK 3 T TENSOR REMARK 3 T11: 1.6672 T22: 0.8070 REMARK 3 T33: 1.9788 T12: -0.1301 REMARK 3 T13: 0.6207 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.4381 L22: 0.0320 REMARK 3 L33: 1.5346 L12: 0.0909 REMARK 3 L13: 0.8094 L23: 0.1433 REMARK 3 S TENSOR REMARK 3 S11: -0.3223 S12: -0.6760 S13: -0.5934 REMARK 3 S21: 0.4108 S22: -0.6386 S23: -0.4663 REMARK 3 S31: 0.7198 S32: -1.0255 S33: -0.0587 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000254119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45867 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR - REMARK 200 WATER-COOLED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12568 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : 0.41000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 27.30 REMARK 200 R MERGE FOR SHELL (I) : 3.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1JXH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONDITION: PROTEIN 20 MG/ML, REMARK 280 HMP 1 MM, ADP 1 MM, HEPES 50 MM PH 8.0, NACL 150 MM AND 2- REMARK 280 MERCAPTOETHANOL 5 MM RESERVOIR CONDITION: 2-PROPANOL 14% V/V, REMARK 280 CALCIUM CHLORIDE DIHYDRATE 0.14 M, SODIUM ACETATE 0.07 M, REMARK 280 GLYCEROL 30% V/V., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.65800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.65800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.11650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.65800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.65800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.11650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.65800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.65800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.11650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.65800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.65800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.11650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 HIS A 176 REMARK 465 LEU A 177 REMARK 465 GLU A 178 REMARK 465 GLY A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 ALA A 197 REMARK 465 PRO A 198 REMARK 465 ARG A 199 REMARK 465 VAL A 200 REMARK 465 GLN A 201 REMARK 465 THR A 202 REMARK 465 ARG A 203 REMARK 465 ASN A 204 REMARK 465 THR A 205 REMARK 465 HIS A 206 REMARK 465 GLY A 207 REMARK 465 ALA A 244 REMARK 465 PRO A 245 REMARK 465 SER A 246 REMARK 465 ILE A 247 REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 GLY A 250 REMARK 465 HIS A 251 REMARK 465 GLY A 252 REMARK 465 PRO A 253 REMARK 465 VAL A 254 REMARK 465 ASN A 255 REMARK 465 HIS A 256 REMARK 465 PHE A 257 REMARK 465 HIS A 258 REMARK 465 ALA A 259 REMARK 465 TRP A 260 REMARK 465 TRP A 261 REMARK 465 LYS A 262 REMARK 465 ARG A 263 REMARK 465 ALA A 264 REMARK 465 GLU A 265 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ASN B 43 REMARK 465 THR B 44 REMARK 465 LEU B 45 REMARK 465 GLY B 46 REMARK 465 ASP B 68 REMARK 465 ALA B 108 REMARK 465 LYS B 109 REMARK 465 SER B 110 REMARK 465 GLY B 111 REMARK 465 ASP B 112 REMARK 465 PRO B 113 REMARK 465 LEU B 114 REMARK 465 LEU B 177 REMARK 465 GLU B 178 REMARK 465 GLY B 179 REMARK 465 ARG B 194 REMARK 465 PHE B 195 REMARK 465 SER B 196 REMARK 465 ALA B 197 REMARK 465 PRO B 198 REMARK 465 ARG B 199 REMARK 465 VAL B 200 REMARK 465 GLN B 201 REMARK 465 THR B 202 REMARK 465 ARG B 203 REMARK 465 ASN B 204 REMARK 465 THR B 205 REMARK 465 HIS B 206 REMARK 465 GLY B 207 REMARK 465 THR B 208 REMARK 465 ILE B 241 REMARK 465 LYS B 242 REMARK 465 ALA B 243 REMARK 465 ALA B 244 REMARK 465 PRO B 245 REMARK 465 SER B 246 REMARK 465 ILE B 247 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 GLY B 250 REMARK 465 HIS B 251 REMARK 465 GLY B 252 REMARK 465 PRO B 253 REMARK 465 VAL B 254 REMARK 465 ASN B 255 REMARK 465 HIS B 256 REMARK 465 PHE B 257 REMARK 465 HIS B 258 REMARK 465 ALA B 259 REMARK 465 TRP B 260 REMARK 465 TRP B 261 REMARK 465 LYS B 262 REMARK 465 ARG B 263 REMARK 465 ALA B 264 REMARK 465 GLU B 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 0 CG SD CE REMARK 470 VAL A 39 CG1 REMARK 470 THR A 44 OG1 CG2 REMARK 470 LEU A 45 CG CD1 CD2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 149 CG1 CG2 CD1 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 GLN B 42 CG CD OE1 NE2 REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 LEU B 69 CG CD1 CD2 REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 97 CG1 CG2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 HIS B 176 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 ILE B 192 CG1 CG2 CD1 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 -159.79 -144.37 REMARK 500 THR A 135 79.51 -116.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 7R8Y A -21 265 PDB 7R8Y 7R8Y -21 265 DBREF 7R8Y B -21 265 PDB 7R8Y 7R8Y -21 265 SEQRES 1 A 287 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 287 GLU ASN LEU TYR PHE GLN GLY HIS MET MET PRO VAL ALA SEQRES 3 A 287 LEU THR ILE ALA GLY SER ASP SER GLY GLY GLY ALA GLY SEQRES 4 A 287 ILE GLN ALA ASP LEU LYS THR PHE SER ALA LEU GLY VAL SEQRES 5 A 287 TYR GLY MET SER VAL ILE THR ALA VAL THR ALA GLN ASN SEQRES 6 A 287 THR LEU GLY VAL GLN GLY VAL HIS ASP ILE PRO PRO GLU SEQRES 7 A 287 LEU VAL ALA ALA GLN ILE ASP ALA VAL PHE GLU ASP LEU SEQRES 8 A 287 ARG VAL ASP ALA VAL LYS THR GLY MET LEU SER ASN ALA SEQRES 9 A 287 GLU ILE VAL GLU ALA VAL ALA GLU ALA LEU ARG ARG TYR SEQRES 10 A 287 GLY VAL ARG PRO LEU VAL VAL ASP PRO VAL MET VAL ALA SEQRES 11 A 287 LYS SER GLY ASP PRO LEU LEU ALA PRO ASP ALA VAL GLU SEQRES 12 A 287 ALA LEU LYS GLU ARG LEU PHE PRO LEU ALA THR ILE ILE SEQRES 13 A 287 THR PRO ASN LEU PRO GLU ALA GLU VAL LEU LEU GLY ARG SEQRES 14 A 287 PRO ILE ARG THR GLU GLU GLU MET GLU GLU ALA ALA ARG SEQRES 15 A 287 ARG LEU LEU ALA LEU GLY PRO LYS ALA VAL LEU LEU LYS SEQRES 16 A 287 GLY GLY HIS LEU GLU GLY GLU GLU ALA VAL ASP LEU LEU SEQRES 17 A 287 ALA ASP GLY GLU GLY ILE HIS ARG PHE SER ALA PRO ARG SEQRES 18 A 287 VAL GLN THR ARG ASN THR HIS GLY THR GLY CYS THR LEU SEQRES 19 A 287 SER ALA ALA ILE ALA ALA HIS LEU ALA ARG GLY HIS ASP SEQRES 20 A 287 LEU PRO GLU ALA VAL ARG GLU ALA LYS ALA TYR LEU THR SEQRES 21 A 287 GLY ALA ILE LYS ALA ALA PRO SER ILE GLY HIS GLY HIS SEQRES 22 A 287 GLY PRO VAL ASN HIS PHE HIS ALA TRP TRP LYS ARG ALA SEQRES 23 A 287 GLU SEQRES 1 B 287 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 287 GLU ASN LEU TYR PHE GLN GLY HIS MET MET PRO VAL ALA SEQRES 3 B 287 LEU THR ILE ALA GLY SER ASP SER GLY GLY GLY ALA GLY SEQRES 4 B 287 ILE GLN ALA ASP LEU LYS THR PHE SER ALA LEU GLY VAL SEQRES 5 B 287 TYR GLY MET SER VAL ILE THR ALA VAL THR ALA GLN ASN SEQRES 6 B 287 THR LEU GLY VAL GLN GLY VAL HIS ASP ILE PRO PRO GLU SEQRES 7 B 287 LEU VAL ALA ALA GLN ILE ASP ALA VAL PHE GLU ASP LEU SEQRES 8 B 287 ARG VAL ASP ALA VAL LYS THR GLY MET LEU SER ASN ALA SEQRES 9 B 287 GLU ILE VAL GLU ALA VAL ALA GLU ALA LEU ARG ARG TYR SEQRES 10 B 287 GLY VAL ARG PRO LEU VAL VAL ASP PRO VAL MET VAL ALA SEQRES 11 B 287 LYS SER GLY ASP PRO LEU LEU ALA PRO ASP ALA VAL GLU SEQRES 12 B 287 ALA LEU LYS GLU ARG LEU PHE PRO LEU ALA THR ILE ILE SEQRES 13 B 287 THR PRO ASN LEU PRO GLU ALA GLU VAL LEU LEU GLY ARG SEQRES 14 B 287 PRO ILE ARG THR GLU GLU GLU MET GLU GLU ALA ALA ARG SEQRES 15 B 287 ARG LEU LEU ALA LEU GLY PRO LYS ALA VAL LEU LEU LYS SEQRES 16 B 287 GLY GLY HIS LEU GLU GLY GLU GLU ALA VAL ASP LEU LEU SEQRES 17 B 287 ALA ASP GLY GLU GLY ILE HIS ARG PHE SER ALA PRO ARG SEQRES 18 B 287 VAL GLN THR ARG ASN THR HIS GLY THR GLY CYS THR LEU SEQRES 19 B 287 SER ALA ALA ILE ALA ALA HIS LEU ALA ARG GLY HIS ASP SEQRES 20 B 287 LEU PRO GLU ALA VAL ARG GLU ALA LYS ALA TYR LEU THR SEQRES 21 B 287 GLY ALA ILE LYS ALA ALA PRO SER ILE GLY HIS GLY HIS SEQRES 22 B 287 GLY PRO VAL ASN HIS PHE HIS ALA TRP TRP LYS ARG ALA SEQRES 23 B 287 GLU HET HMH A 301 10 HETNAM HMH 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE FORMUL 3 HMH C6 H9 N3 O HELIX 1 AA1 ALA A 16 LEU A 28 1 13 HELIX 2 AA2 PRO A 54 LEU A 69 1 16 HELIX 3 AA3 ASN A 81 TYR A 95 1 15 HELIX 4 AA4 ALA A 116 ASP A 118 5 3 HELIX 5 AA5 ALA A 119 LEU A 127 1 9 HELIX 6 AA6 PHE A 128 ALA A 131 5 4 HELIX 7 AA7 ASN A 137 GLY A 146 1 10 HELIX 8 AA8 THR A 151 ALA A 164 1 14 HELIX 9 AA9 GLY A 209 ARG A 222 1 14 HELIX 10 AB1 ASP A 225 ALA A 243 1 19 HELIX 11 AB2 GLY B 17 LEU B 28 1 12 HELIX 12 AB3 PRO B 54 PHE B 66 1 13 HELIX 13 AB4 ASN B 81 TYR B 95 1 15 HELIX 14 AB5 ALA B 116 LEU B 127 1 12 HELIX 15 AB6 PHE B 128 ALA B 131 5 4 HELIX 16 AB7 ASN B 137 GLY B 146 1 10 HELIX 17 AB8 THR B 151 ALA B 164 1 14 HELIX 18 AB9 THR B 211 ARG B 222 1 12 HELIX 19 AC1 ASP B 225 GLY B 239 1 15 SHEET 1 AA1 6 VAL A 47 ASP A 52 0 SHEET 2 AA1 6 TYR A 31 GLN A 42 -1 N ALA A 41 O GLN A 48 SHEET 3 AA1 6 VAL A 3 ASP A 11 1 N ALA A 4 O TYR A 31 SHEET 4 AA1 6 ALA A 73 THR A 76 1 O LYS A 75 N LEU A 5 SHEET 5 AA1 6 LEU A 100 VAL A 102 1 O VAL A 101 N VAL A 74 SHEET 6 AA1 6 ILE A 133 ILE A 134 1 O ILE A 133 N VAL A 102 SHEET 1 AA2 3 ALA A 169 LEU A 172 0 SHEET 2 AA2 3 ASP A 184 ASP A 188 -1 O ALA A 187 N VAL A 170 SHEET 3 AA2 3 GLY A 191 PHE A 195 -1 O PHE A 195 N ASP A 184 SHEET 1 AA3 6 VAL B 50 ASP B 52 0 SHEET 2 AA3 6 TYR B 31 THR B 40 -1 N VAL B 39 O HIS B 51 SHEET 3 AA3 6 VAL B 3 ASP B 11 1 N SER B 10 O THR B 40 SHEET 4 AA3 6 ALA B 73 THR B 76 1 O LYS B 75 N LEU B 5 SHEET 5 AA3 6 LEU B 100 VAL B 102 1 O VAL B 101 N VAL B 74 SHEET 6 AA3 6 ILE B 133 ILE B 134 1 O ILE B 133 N VAL B 102 SHEET 1 AA4 2 VAL B 170 LEU B 172 0 SHEET 2 AA4 2 LEU B 185 ALA B 187 -1 O ALA B 187 N VAL B 170 CRYST1 113.316 113.316 112.233 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008910 0.00000