HEADER VIRAL PROTEIN/IMMUNE SYSTEM 28-JUN-21 7R98 TITLE STRUCTURE OF THE SARS-COV-2 N PROTEIN RNA-BINDING DOMAIN BOUND TO TITLE 2 SINGLE-DOMAIN ANTIBODY B6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RNA-BINDING DOMAIN; COMPND 5 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY B6; COMPND 9 CHAIN: D, E, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, NANOBODY, NUCLEOCAPSID, VIRUS, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.D.CORBETT,Q.YE REVDAT 4 18-OCT-23 7R98 1 JRNL REVDAT 3 09-FEB-22 7R98 1 JRNL REVDAT 2 01-DEC-21 7R98 1 JRNL REVDAT 1 07-JUL-21 7R98 0 SPRSDE 07-JUL-21 7R98 7N0S JRNL AUTH Q.YE,S.LU,K.D.CORBETT JRNL TITL STRUCTURAL BASIS FOR SARS-COV-2 NUCLEOCAPSID PROTEIN JRNL TITL 2 RECOGNITION BY SINGLE-DOMAIN ANTIBODIES. JRNL REF FRONT IMMUNOL V. 12 19037 2021 JRNL REFN ESSN 1664-3224 JRNL PMID 34381460 JRNL DOI 10.3389/FIMMU.2021.719037 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.YE,S.LU,K.D.CORBETT REMARK 1 TITL STRUCTURAL BASIS FOR SARS-COV-2 NUCLEOCAPSID PROTEIN REMARK 1 TITL 2 RECOGNITION BY SINGLE-DOMAIN ANTIBODIES. REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 34100017 REMARK 1 DOI 10.1101/2021.06.01.446591 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 87.5300 - 5.5800 1.00 3102 123 0.1901 0.2173 REMARK 3 2 5.5800 - 4.4300 1.00 2994 142 0.1670 0.1798 REMARK 3 3 4.4300 - 3.8700 1.00 2930 149 0.1798 0.2468 REMARK 3 4 3.8700 - 3.5200 1.00 2963 117 0.2322 0.2964 REMARK 3 5 3.5200 - 3.2600 1.00 2900 146 0.2724 0.3289 REMARK 3 6 3.2600 - 3.0700 1.00 2918 131 0.2619 0.3326 REMARK 3 7 3.0700 - 2.9200 1.00 2911 146 0.3057 0.3799 REMARK 3 8 2.9200 - 2.7900 1.00 2871 158 0.3527 0.4320 REMARK 3 9 2.7900 - 2.6800 1.00 2865 171 0.3471 0.3747 REMARK 3 10 2.6800 - 2.5900 1.00 2852 181 0.3497 0.3874 REMARK 3 11 2.5900 - 2.5100 0.92 2642 132 0.3879 0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.482 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 5740 REMARK 3 ANGLE : 1.493 7808 REMARK 3 CHIRALITY : 0.078 826 REMARK 3 PLANARITY : 0.012 1026 REMARK 3 DIHEDRAL : 12.446 2018 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 34.3451 -71.4791 0.4313 REMARK 3 T TENSOR REMARK 3 T11: 0.5711 T22: 0.4037 REMARK 3 T33: 0.6364 T12: -0.0785 REMARK 3 T13: 0.0189 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 5.1624 L22: 6.0797 REMARK 3 L33: 4.1673 L12: -0.9128 REMARK 3 L13: 0.4628 L23: -0.2838 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: -0.2901 S13: -0.8781 REMARK 3 S21: 0.4322 S22: -0.0626 S23: -0.4572 REMARK 3 S31: 0.5379 S32: 0.0181 S33: -0.0152 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 15.2067 -34.3507 1.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.6431 T22: 1.2898 REMARK 3 T33: 1.0834 T12: 0.0471 REMARK 3 T13: -0.1467 T23: -0.3986 REMARK 3 L TENSOR REMARK 3 L11: 1.1043 L22: 1.1617 REMARK 3 L33: 4.2568 L12: -0.9889 REMARK 3 L13: -0.6818 L23: 0.5871 REMARK 3 S TENSOR REMARK 3 S11: -0.2125 S12: -1.6174 S13: 1.4279 REMARK 3 S21: 0.2101 S22: 0.2699 S23: -0.7803 REMARK 3 S31: -0.5069 S32: 0.3974 S33: 0.0370 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -6.6204 -69.4954 0.4467 REMARK 3 T TENSOR REMARK 3 T11: 1.1132 T22: 0.6455 REMARK 3 T33: 1.2927 T12: 0.1642 REMARK 3 T13: 0.2897 T23: 0.2578 REMARK 3 L TENSOR REMARK 3 L11: 2.9974 L22: 2.1767 REMARK 3 L33: 4.2298 L12: 0.5968 REMARK 3 L13: -0.4734 L23: -0.6428 REMARK 3 S TENSOR REMARK 3 S11: -0.3663 S12: -0.3367 S13: -0.6561 REMARK 3 S21: 1.0747 S22: 0.4929 S23: 1.1889 REMARK 3 S31: 0.1073 S32: -0.5484 S33: -0.2814 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 33.3498 -43.9785 -15.7828 REMARK 3 T TENSOR REMARK 3 T11: 0.5600 T22: 0.4708 REMARK 3 T33: 0.5082 T12: -0.0229 REMARK 3 T13: 0.1225 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 5.9401 L22: 6.7477 REMARK 3 L33: 4.4497 L12: -0.0155 REMARK 3 L13: -0.2738 L23: -1.2943 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.5005 S13: 0.3349 REMARK 3 S21: -0.6582 S22: -0.0712 S23: -0.3205 REMARK 3 S31: -0.5130 S32: -0.0799 S33: 0.0877 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -7.8692 -48.5493 -15.3714 REMARK 3 T TENSOR REMARK 3 T11: 0.4226 T22: 0.4420 REMARK 3 T33: 0.3743 T12: -0.0259 REMARK 3 T13: 0.0364 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 6.5137 L22: 4.3280 REMARK 3 L33: 5.3097 L12: -0.4580 REMARK 3 L13: -0.4039 L23: -0.0813 REMARK 3 S TENSOR REMARK 3 S11: -0.1952 S12: 0.1827 S13: -0.4993 REMARK 3 S21: 0.0978 S22: 0.1121 S23: 0.0001 REMARK 3 S31: 0.6271 S32: -0.4371 S33: 0.0804 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 16.5984 -82.4039 -16.1967 REMARK 3 T TENSOR REMARK 3 T11: 0.8404 T22: 0.5929 REMARK 3 T33: 1.2018 T12: -0.0317 REMARK 3 T13: -0.0186 T23: -0.2586 REMARK 3 L TENSOR REMARK 3 L11: 4.1137 L22: 4.0118 REMARK 3 L33: 2.4947 L12: -0.2428 REMARK 3 L13: 0.2125 L23: -0.8628 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: 0.6154 S13: -1.4146 REMARK 3 S21: -0.6957 S22: 0.1577 S23: 0.1113 REMARK 3 S31: 0.2708 S32: 0.3157 S33: 0.0610 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 49 through 92 or REMARK 3 resid 105 through 174)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 49 through 92 or REMARK 3 resid 105 through 174)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and resid 49 through 174) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "E" and resid -1 through 127) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "F" and resid -1 through 127) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 112.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.21400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 0.1 M REMARK 280 SODIUM-POTASSIUM TARTRATE, AND 19% PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.98200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.98200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.80650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.53050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.80650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.53050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.98200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.80650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.53050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.98200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.80650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 87.53050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 48 REMARK 465 ILE A 94 REMARK 465 ARG A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 ASP A 98 REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 ILE B 94 REMARK 465 ARG B 95 REMARK 465 GLY B 96 REMARK 465 GLY B 97 REMARK 465 ASP B 98 REMARK 465 GLY B 99 REMARK 465 LYS B 100 REMARK 465 MET B 101 REMARK 465 LYS B 102 REMARK 465 ASP B 103 REMARK 465 ARG C 93 REMARK 465 ILE C 94 REMARK 465 ARG C 95 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 ASP C 98 REMARK 465 GLY C 99 REMARK 465 LYS C 100 REMARK 465 MET C 101 REMARK 465 LYS C 102 REMARK 465 ASP C 103 REMARK 465 LEU C 104 REMARK 465 ALA D 128 REMARK 465 ALA D 129 REMARK 465 ALA D 130 REMARK 465 LEU D 131 REMARK 465 GLU D 132 REMARK 465 HIS D 133 REMARK 465 HIS D 134 REMARK 465 HIS D 135 REMARK 465 HIS D 136 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 465 ALA E 129 REMARK 465 ALA E 130 REMARK 465 LEU E 131 REMARK 465 GLU E 132 REMARK 465 HIS E 133 REMARK 465 HIS E 134 REMARK 465 HIS E 135 REMARK 465 HIS E 136 REMARK 465 HIS E 137 REMARK 465 HIS E 138 REMARK 465 ALA F 129 REMARK 465 ALA F 130 REMARK 465 LEU F 131 REMARK 465 GLU F 132 REMARK 465 HIS F 133 REMARK 465 HIS F 134 REMARK 465 HIS F 135 REMARK 465 HIS F 136 REMARK 465 HIS F 137 REMARK 465 HIS F 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 MET A 101 CG SD CE REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 ARG C 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 174 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 16 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP D 16 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU D 103 CB - CG - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 GLU F 1 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 37.24 -95.32 REMARK 500 LYS A 143 59.86 -96.96 REMARK 500 ASN B 77 33.05 -91.21 REMARK 500 GLU B 118 47.08 -109.17 REMARK 500 ASN C 77 33.30 -93.30 REMARK 500 GLU C 118 45.20 -108.51 REMARK 500 LYS C 143 59.37 -96.51 REMARK 500 SER D 26 30.42 71.28 REMARK 500 ALA D 93 179.67 179.35 REMARK 500 ILE D 106 -64.77 63.73 REMARK 500 ALA D 115 140.86 171.62 REMARK 500 VAL E 49 -60.86 -104.26 REMARK 500 ILE E 106 -51.32 61.85 REMARK 500 ALA E 115 138.53 175.99 REMARK 500 VAL F 49 -62.77 -107.47 REMARK 500 ASP F 91 1.64 -68.02 REMARK 500 ALA F 93 178.70 179.01 REMARK 500 ILE F 106 -56.61 68.81 REMARK 500 ALA F 115 139.32 175.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 7R98 A 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7R98 B 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7R98 C 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7R98 D -1 138 PDB 7R98 7R98 -1 138 DBREF 7R98 E -1 138 PDB 7R98 7R98 -1 138 DBREF 7R98 F -1 138 PDB 7R98 7R98 -1 138 SEQADV 7R98 ALA A 48 UNP P0DTC9 EXPRESSION TAG SEQADV 7R98 ALA B 48 UNP P0DTC9 EXPRESSION TAG SEQADV 7R98 ALA C 48 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 127 ALA THR ALA SER TRP PHE THR ALA LEU THR GLN HIS GLY SEQRES 2 A 127 LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO SEQRES 3 A 127 ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE GLY TYR SEQRES 4 A 127 TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY ASP GLY SEQRES 5 A 127 LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE TYR TYR SEQRES 6 A 127 LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA SEQRES 7 A 127 ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU GLY ALA SEQRES 8 A 127 LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG ASN PRO SEQRES 9 A 127 ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY SEQRES 10 A 127 THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 B 127 ALA THR ALA SER TRP PHE THR ALA LEU THR GLN HIS GLY SEQRES 2 B 127 LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO SEQRES 3 B 127 ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE GLY TYR SEQRES 4 B 127 TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY ASP GLY SEQRES 5 B 127 LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE TYR TYR SEQRES 6 B 127 LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA SEQRES 7 B 127 ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU GLY ALA SEQRES 8 B 127 LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG ASN PRO SEQRES 9 B 127 ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY SEQRES 10 B 127 THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 C 127 ALA THR ALA SER TRP PHE THR ALA LEU THR GLN HIS GLY SEQRES 2 C 127 LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY VAL PRO SEQRES 3 C 127 ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE GLY TYR SEQRES 4 C 127 TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY ASP GLY SEQRES 5 C 127 LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE TYR TYR SEQRES 6 C 127 LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR GLY ALA SEQRES 7 C 127 ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU GLY ALA SEQRES 8 C 127 LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG ASN PRO SEQRES 9 C 127 ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO GLN GLY SEQRES 10 C 127 THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 D 140 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 D 140 VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS VAL ALA SEQRES 3 D 140 VAL SER GLY ARG THR ILE SER THR PHE ALA MET GLY TRP SEQRES 4 D 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 D 140 THR ILE ASN TRP SER GLY SER SER ALA ARG TYR ALA ASP SEQRES 6 D 140 PRO VAL GLU GLY ARG PHE THR ILE SER ARG ASP ASP ALA SEQRES 7 D 140 LYS ASN THR VAL TYR LEU GLU MET SER SER LEU LYS PRO SEQRES 8 D 140 GLY ASP SER ALA VAL TYR TYR CYS ALA SER GLY ARG TYR SEQRES 9 D 140 LEU GLY GLY ILE THR SER TYR SER GLN GLY ASP PHE ALA SEQRES 10 D 140 PRO TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA SEQRES 11 D 140 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 140 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 E 140 VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS VAL ALA SEQRES 3 E 140 VAL SER GLY ARG THR ILE SER THR PHE ALA MET GLY TRP SEQRES 4 E 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 E 140 THR ILE ASN TRP SER GLY SER SER ALA ARG TYR ALA ASP SEQRES 6 E 140 PRO VAL GLU GLY ARG PHE THR ILE SER ARG ASP ASP ALA SEQRES 7 E 140 LYS ASN THR VAL TYR LEU GLU MET SER SER LEU LYS PRO SEQRES 8 E 140 GLY ASP SER ALA VAL TYR TYR CYS ALA SER GLY ARG TYR SEQRES 9 E 140 LEU GLY GLY ILE THR SER TYR SER GLN GLY ASP PHE ALA SEQRES 10 E 140 PRO TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA SEQRES 11 E 140 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 140 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 F 140 VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS VAL ALA SEQRES 3 F 140 VAL SER GLY ARG THR ILE SER THR PHE ALA MET GLY TRP SEQRES 4 F 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 F 140 THR ILE ASN TRP SER GLY SER SER ALA ARG TYR ALA ASP SEQRES 6 F 140 PRO VAL GLU GLY ARG PHE THR ILE SER ARG ASP ASP ALA SEQRES 7 F 140 LYS ASN THR VAL TYR LEU GLU MET SER SER LEU LYS PRO SEQRES 8 F 140 GLY ASP SER ALA VAL TYR TYR CYS ALA SER GLY ARG TYR SEQRES 9 F 140 LEU GLY GLY ILE THR SER TYR SER GLN GLY ASP PHE ALA SEQRES 10 F 140 PRO TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA SEQRES 11 F 140 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER A 79 ASP A 82 5 4 HELIX 2 AA2 SER B 79 ASP B 82 5 4 HELIX 3 AA3 SER C 79 ASP C 82 5 4 HELIX 4 AA4 LYS D 88 SER D 92 5 5 HELIX 5 AA5 SER D 110 PHE D 114 5 5 HELIX 6 AA6 LYS E 88 SER E 92 5 5 HELIX 7 AA7 SER E 110 PHE E 114 5 5 HELIX 8 AA8 LYS F 88 SER F 92 5 5 HELIX 9 AA9 SER F 110 PHE F 114 5 5 SHEET 1 AA1 4 LEU A 56 THR A 57 0 SHEET 2 AA1 4 ARG A 107 TYR A 112 -1 O TRP A 108 N LEU A 56 SHEET 3 AA1 4 ILE A 84 ALA A 90 -1 N TYR A 86 O TYR A 111 SHEET 4 AA1 4 ILE A 130 ALA A 134 -1 O VAL A 133 N GLY A 85 SHEET 1 AA2 4 LEU B 56 THR B 57 0 SHEET 2 AA2 4 ARG B 107 TYR B 112 -1 O TRP B 108 N LEU B 56 SHEET 3 AA2 4 ILE B 84 ALA B 90 -1 N TYR B 86 O TYR B 111 SHEET 4 AA2 4 ILE B 130 ALA B 134 -1 O VAL B 133 N GLY B 85 SHEET 1 AA3 4 LEU C 56 THR C 57 0 SHEET 2 AA3 4 ARG C 107 TYR C 112 -1 O TRP C 108 N LEU C 56 SHEET 3 AA3 4 ILE C 84 ALA C 90 -1 N ARG C 88 O TYR C 109 SHEET 4 AA3 4 ILE C 130 ALA C 134 -1 O VAL C 133 N GLY C 85 SHEET 1 AA4 4 LEU D 4 SER D 7 0 SHEET 2 AA4 4 LEU D 18 ALA D 24 -1 O VAL D 23 N GLN D 5 SHEET 3 AA4 4 THR D 79 MET D 84 -1 O MET D 84 N LEU D 18 SHEET 4 AA4 4 PHE D 69 ASP D 74 -1 N SER D 72 O TYR D 81 SHEET 1 AA5 6 LEU D 11 GLN D 13 0 SHEET 2 AA5 6 THR D 121 SER D 126 1 O THR D 124 N VAL D 12 SHEET 3 AA5 6 ALA D 93 TYR D 102 -1 N ALA D 93 O VAL D 123 SHEET 4 AA5 6 PHE D 33 GLN D 40 -1 N PHE D 38 O TYR D 96 SHEET 5 AA5 6 ARG D 46 ILE D 52 -1 O ALA D 50 N TRP D 37 SHEET 6 AA5 6 ALA D 59 TYR D 61 -1 O ARG D 60 N THR D 51 SHEET 1 AA6 4 LEU E 4 SER E 7 0 SHEET 2 AA6 4 LEU E 18 ALA E 24 -1 O VAL E 23 N GLN E 5 SHEET 3 AA6 4 THR E 79 MET E 84 -1 O LEU E 82 N LEU E 20 SHEET 4 AA6 4 PHE E 69 ASP E 74 -1 N THR E 70 O GLU E 83 SHEET 1 AA7 6 LEU E 11 GLN E 13 0 SHEET 2 AA7 6 THR E 121 SER E 126 1 O THR E 124 N VAL E 12 SHEET 3 AA7 6 ALA E 93 TYR E 102 -1 N ALA E 93 O VAL E 123 SHEET 4 AA7 6 PHE E 33 GLN E 40 -1 N ALA E 34 O GLY E 100 SHEET 5 AA7 6 ARG E 46 ILE E 52 -1 O ALA E 50 N TRP E 37 SHEET 6 AA7 6 ALA E 59 TYR E 61 -1 O ARG E 60 N THR E 51 SHEET 1 AA8 4 LEU F 4 SER F 7 0 SHEET 2 AA8 4 LEU F 18 ALA F 24 -1 O VAL F 23 N GLN F 5 SHEET 3 AA8 4 THR F 79 MET F 84 -1 O MET F 84 N LEU F 18 SHEET 4 AA8 4 PHE F 69 ASP F 74 -1 N THR F 70 O GLU F 83 SHEET 1 AA9 6 LEU F 11 GLN F 13 0 SHEET 2 AA9 6 THR F 121 SER F 126 1 O SER F 126 N VAL F 12 SHEET 3 AA9 6 ALA F 93 TYR F 102 -1 N ALA F 93 O VAL F 123 SHEET 4 AA9 6 PHE F 33 GLN F 40 -1 N ALA F 34 O GLY F 100 SHEET 5 AA9 6 ARG F 46 ILE F 52 -1 O ALA F 50 N TRP F 37 SHEET 6 AA9 6 ALA F 59 TYR F 61 -1 O ARG F 60 N THR F 51 SSBOND 1 CYS D 22 CYS D 97 1555 1555 2.10 SSBOND 2 CYS E 22 CYS E 97 1555 1555 2.09 SSBOND 3 CYS F 22 CYS F 97 1555 1555 2.06 CISPEP 1 ALA D 115 PRO D 116 0 -4.99 CISPEP 2 ALA E 115 PRO E 116 0 -4.85 CISPEP 3 ALA F 115 PRO F 116 0 -1.68 CRYST1 99.613 175.061 111.964 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008931 0.00000 MTRIX1 1 -0.504500 -0.863410 -0.001450 -29.11265 1 MTRIX2 1 0.863410 -0.504495 -0.002734 -99.70545 1 MTRIX3 1 0.001629 -0.002631 0.999995 0.66055 1 MTRIX1 2 -0.499376 0.866233 0.016247 71.90088 1 MTRIX2 2 -0.866347 -0.499088 -0.018817 -75.57381 1 MTRIX3 2 -0.008192 -0.023472 0.999691 -0.85482 1 MTRIX1 3 -0.513000 -0.858341 -0.009055 -28.55226 1 MTRIX2 3 0.858003 -0.512424 -0.035403 -100.20165 1 MTRIX3 3 0.025748 -0.025931 0.999332 -1.54252 1 MTRIX1 4 -0.499768 0.865040 0.044010 71.90510 1 MTRIX2 4 -0.865827 -0.500338 0.002273 -75.44149 1 MTRIX3 4 0.023987 -0.036969 0.999028 -2.80150 1