HEADER CHAPERONE 04-JUL-21 7RAX TITLE ATP-BINDING STATE OF THE NUCLEOTIDE-BINDING DOMAIN OF HSP70 DNAK TITLE 2 MUTANT T199A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSP70,HEAT SHOCK 70 KDA PROTEIN,HEAT SHOCK PROTEIN 70; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, FAZ83_07380; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS MOLECULAR CHAPERONE, HSP70, PROTEIN FOLDING, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,W.A.HENDRICKSON REVDAT 2 25-OCT-23 7RAX 1 REMARK REVDAT 1 05-JUL-23 7RAX 0 JRNL AUTH W.WANG,W.A.HENDRICKSON JRNL TITL VISUALIZATION OF HSP70-CATALYZED ATP HYDROLYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 71101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.530 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1800 - 3.3200 0.99 5438 142 0.1490 0.1772 REMARK 3 2 3.3100 - 2.6300 0.99 5364 149 0.1474 0.1507 REMARK 3 3 2.6300 - 2.3000 0.99 5336 138 0.1421 0.1587 REMARK 3 4 2.3000 - 2.0900 0.99 5328 138 0.1376 0.1729 REMARK 3 5 2.0900 - 1.9400 1.00 5338 140 0.1431 0.1833 REMARK 3 6 1.9400 - 1.8200 0.99 5321 130 0.1645 0.1819 REMARK 3 7 1.8200 - 1.7300 1.00 5302 144 0.1834 0.2221 REMARK 3 8 1.7300 - 1.6600 1.00 5344 136 0.1971 0.2272 REMARK 3 9 1.6600 - 1.5900 1.00 5312 131 0.2039 0.2469 REMARK 3 10 1.5900 - 1.5400 1.00 5312 155 0.2193 0.2584 REMARK 3 11 1.5400 - 1.4900 1.00 5326 116 0.2523 0.2914 REMARK 3 12 1.4900 - 1.4500 1.00 5288 149 0.2874 0.3007 REMARK 3 13 1.4500 - 1.4100 1.00 5293 131 0.3376 0.3699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3056 REMARK 3 ANGLE : 1.023 4143 REMARK 3 CHIRALITY : 0.247 485 REMARK 3 PLANARITY : 0.006 540 REMARK 3 DIHEDRAL : 16.914 1157 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 1 THROUGH 39 ) OR (RESID 116 REMARK 3 THROUGH 188 )) AND ( BFACTOR > 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5764 40.4277 65.6774 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1616 REMARK 3 T33: 0.2133 T12: -0.0162 REMARK 3 T13: 0.0095 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.5366 L22: 0.2056 REMARK 3 L33: -0.0900 L12: 0.0891 REMARK 3 L13: 0.1653 L23: 0.1212 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0661 S13: -0.0738 REMARK 3 S21: 0.0242 S22: -0.0646 S23: 0.0129 REMARK 3 S31: -0.0176 S32: 0.0251 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 115 ) AND ( BFACTOR REMARK 3 > 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0627 66.0430 83.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1583 REMARK 3 T33: 0.1965 T12: -0.0061 REMARK 3 T13: 0.0094 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2373 L22: 0.8309 REMARK 3 L33: 0.1826 L12: -0.2445 REMARK 3 L13: 0.3631 L23: 0.4083 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.0718 S13: -0.0160 REMARK 3 S21: 0.2128 S22: 0.0179 S23: 0.0098 REMARK 3 S31: -0.0921 S32: -0.0007 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 189 THROUGH 228 ) OR (RESID REMARK 3 307 THROUGH 393)) AND ( BFACTOR > 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2442 42.2373 72.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.1467 REMARK 3 T33: 0.1587 T12: -0.0214 REMARK 3 T13: 0.0058 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4929 L22: 0.1074 REMARK 3 L33: 0.4628 L12: 0.1834 REMARK 3 L13: 0.2011 L23: 0.2160 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.0595 S13: -0.0168 REMARK 3 S21: -0.0704 S22: 0.0276 S23: -0.0157 REMARK 3 S31: 0.0046 S32: -0.0782 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 306 ) AND ( BFACTOR REMARK 3 > 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6564 53.2513 103.5308 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1839 REMARK 3 T33: 0.1556 T12: -0.0042 REMARK 3 T13: -0.0094 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4230 L22: 0.3432 REMARK 3 L33: 0.5571 L12: 0.2575 REMARK 3 L13: 0.3452 L23: 0.2733 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0694 S13: 0.0412 REMARK 3 S21: -0.0397 S22: 0.0334 S23: -0.0468 REMARK 3 S31: -0.0096 S32: -0.0962 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000257965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 48.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 2.99700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M SODIUM REMARK 280 IODIDE, 20% W/V PEG 3350, EVAPORATION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.05900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 182 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 238 HH12 ARG A 253 1.47 REMARK 500 O HOH A 535 O HOH A 873 2.02 REMARK 500 O HOH A 630 O HOH A 930 2.04 REMARK 500 O ASP A 182 O HOH A 501 2.04 REMARK 500 O HOH A 802 O HOH A 859 2.05 REMARK 500 OD2 ASP A 201 O HOH A 502 2.07 REMARK 500 OD1 ASP A 201 O HOH A 503 2.09 REMARK 500 O HOH A 564 O HOH A 818 2.13 REMARK 500 O HOH A 547 O HOH A 790 2.14 REMARK 500 O HOH A 763 O HOH A 914 2.16 REMARK 500 O HOH A 716 O HOH A 899 2.19 REMARK 500 O HOH A 826 O HOH A 913 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 836 O HOH A 907 2557 1.21 REMARK 500 O HOH A 882 O HOH A 884 2647 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 56.86 -143.73 REMARK 500 ASP A 182 72.35 -111.35 REMARK 500 ASP A 388 45.66 75.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 968 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 13 O 119.7 REMARK 620 3 CSD A 15 OD1 80.0 85.7 REMARK 620 4 ATP A 401 O1B 96.9 98.1 176.1 REMARK 620 5 HOH A 596 O 49.4 140.3 121.5 54.6 REMARK 620 6 HOH A 676 O 80.0 160.3 99.7 77.2 51.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 194 OD1 REMARK 620 2 ALA A 199 O 111.6 REMARK 620 3 ATP A 401 O3G 102.7 122.9 REMARK 620 4 HOH A 705 O 138.4 102.3 76.8 REMARK 620 5 HOH A 844 O 94.9 79.7 141.6 67.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O3G REMARK 620 2 ATP A 401 O1B 91.0 REMARK 620 3 HOH A 538 O 87.1 178.0 REMARK 620 4 HOH A 596 O 177.3 91.3 90.7 REMARK 620 5 HOH A 613 O 94.7 89.1 90.4 86.8 REMARK 620 6 HOH A 677 O 91.0 92.9 87.8 87.4 173.9 REMARK 620 N 1 2 3 4 5 DBREF1 7RAX A 2 393 UNP A0A6D2W465_ECOLI DBREF2 7RAX A A0A6D2W465 2 393 SEQADV 7RAX SER A 1 UNP A0A6D2W46 EXPRESSION TAG SEQADV 7RAX ALA A 199 UNP A0A6D2W46 THR 199 ENGINEERED MUTATION SEQRES 1 A 393 SER GLY LYS ILE ILE GLY ILE ASP LEU GLY THR THR ASN SEQRES 2 A 393 SER CYS VAL ALA ILE MET ASP GLY THR THR PRO ARG VAL SEQRES 3 A 393 LEU GLU ASN ALA GLU GLY ASP ARG THR THR PRO SER ILE SEQRES 4 A 393 ILE ALA TYR THR GLN ASP GLY GLU THR LEU VAL GLY GLN SEQRES 5 A 393 PRO ALA LYS ARG GLN ALA VAL THR ASN PRO GLN ASN THR SEQRES 6 A 393 LEU PHE ALA ILE LYS ARG LEU ILE GLY ARG ARG PHE GLN SEQRES 7 A 393 ASP GLU GLU VAL GLN ARG ASP VAL SER ILE MET PRO PHE SEQRES 8 A 393 LYS ILE ILE ALA ALA ASP ASN GLY ASP ALA TRP VAL GLU SEQRES 9 A 393 VAL LYS GLY GLN LYS MET ALA PRO PRO GLN ILE SER ALA SEQRES 10 A 393 GLU VAL LEU LYS LYS MET LYS LYS THR ALA GLU ASP TYR SEQRES 11 A 393 LEU GLY GLU PRO VAL THR GLU ALA VAL ILE THR VAL PRO SEQRES 12 A 393 ALA TYR PHE ASN ASP ALA GLN ARG GLN ALA THR LYS ASP SEQRES 13 A 393 ALA GLY ARG ILE ALA GLY LEU GLU VAL LYS ARG ILE ILE SEQRES 14 A 393 ASN GLU PRO THR ALA ALA ALA LEU ALA TYR GLY LEU ASP SEQRES 15 A 393 LYS GLY THR GLY ASN ARG THR ILE ALA VAL TYR ASP LEU SEQRES 16 A 393 GLY GLY GLY ALA PHE ASP ILE SER ILE ILE GLU ILE ASP SEQRES 17 A 393 GLU VAL ASP GLY GLU LYS THR PHE GLU VAL LEU ALA THR SEQRES 18 A 393 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SER SEQRES 19 A 393 ARG LEU ILE ASN TYR LEU VAL GLU GLU PHE LYS LYS ASP SEQRES 20 A 393 GLN GLY ILE ASP LEU ARG ASN ASP PRO LEU ALA MET GLN SEQRES 21 A 393 ARG LEU LYS GLU ALA ALA GLU LYS ALA LYS ILE GLU LEU SEQRES 22 A 393 SER SER ALA GLN GLN THR ASP VAL ASN LEU PRO TYR ILE SEQRES 23 A 393 THR ALA ASP ALA THR GLY PRO LYS HIS MET ASN ILE LYS SEQRES 24 A 393 VAL THR ARG ALA LYS LEU GLU SER LEU VAL GLU ASP LEU SEQRES 25 A 393 VAL ASN ARG SER ILE GLU PRO LEU LYS VAL ALA LEU GLN SEQRES 26 A 393 ASP ALA GLY LEU SER VAL SER ASP ILE ASP ASP VAL ILE SEQRES 27 A 393 LEU VAL GLY GLY GLN THR ARG MET PRO MET VAL GLN LYS SEQRES 28 A 393 LYS VAL ALA GLU PHE PHE GLY LYS GLU PRO ARG LYS ASP SEQRES 29 A 393 VAL ASN PRO ASP GLU ALA VAL ALA ILE GLY ALA ALA VAL SEQRES 30 A 393 GLN GLY GLY VAL LEU THR GLY ASP VAL LYS ASP VAL LEU SEQRES 31 A 393 LEU LEU ASP HET CSD A 15 12 HET ATP A 401 43 HET MG A 402 1 HET GOL A 403 14 HET K A 404 1 HET NA A 405 1 HETNAM CSD 3-SULFINOALANINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 K K 1+ FORMUL 6 NA NA 1+ FORMUL 7 HOH *468(H2 O) HELIX 1 AA1 GLY A 51 GLN A 57 1 7 HELIX 2 AA2 ASN A 61 GLN A 63 5 3 HELIX 3 AA3 ILE A 69 LEU A 72 5 4 HELIX 4 AA4 ASP A 79 MET A 89 1 11 HELIX 5 AA5 ALA A 111 GLY A 132 1 22 HELIX 6 AA6 ASN A 147 ALA A 161 1 15 HELIX 7 AA7 GLU A 171 ASP A 182 1 12 HELIX 8 AA8 GLY A 228 GLY A 249 1 22 HELIX 9 AA9 ASP A 251 ASN A 254 5 4 HELIX 10 AB1 ASP A 255 LEU A 273 1 19 HELIX 11 AB2 ARG A 302 SER A 316 1 15 HELIX 12 AB3 SER A 316 GLY A 328 1 13 HELIX 13 AB4 SER A 330 ILE A 334 5 5 HELIX 14 AB5 GLY A 341 ARG A 345 5 5 HELIX 15 AB6 MET A 346 GLY A 358 1 13 HELIX 16 AB7 GLU A 369 GLY A 384 1 16 SHEET 1 AA1 3 THR A 23 VAL A 26 0 SHEET 2 AA1 3 ASN A 13 ASP A 20 -1 N ASP A 20 O THR A 23 SHEET 3 AA1 3 THR A 36 PRO A 37 -1 O THR A 36 N SER A 14 SHEET 1 AA2 5 THR A 23 VAL A 26 0 SHEET 2 AA2 5 ASN A 13 ASP A 20 -1 N ASP A 20 O THR A 23 SHEET 3 AA2 5 ILE A 4 ASP A 8 -1 N GLY A 6 O ALA A 17 SHEET 4 AA2 5 GLU A 137 VAL A 142 1 O VAL A 139 N ILE A 7 SHEET 5 AA2 5 GLU A 164 ASN A 170 1 O LYS A 166 N ALA A 138 SHEET 1 AA3 3 THR A 48 VAL A 50 0 SHEET 2 AA3 3 ILE A 39 TYR A 42 -1 N ALA A 41 O LEU A 49 SHEET 3 AA3 3 THR A 65 PHE A 67 -1 O LEU A 66 N ILE A 40 SHEET 1 AA4 3 LYS A 92 ALA A 95 0 SHEET 2 AA4 3 ALA A 101 VAL A 105 -1 O TRP A 102 N ILE A 94 SHEET 3 AA4 3 GLN A 108 MET A 110 -1 O MET A 110 N VAL A 103 SHEET 1 AA5 5 ASP A 336 VAL A 340 0 SHEET 2 AA5 5 ARG A 188 LEU A 195 1 N ALA A 191 O ILE A 338 SHEET 3 AA5 5 PHE A 200 VAL A 210 -1 O ILE A 207 N ARG A 188 SHEET 4 AA5 5 GLU A 213 ASP A 224 -1 O GLU A 217 N GLU A 206 SHEET 5 AA5 5 VAL A 389 LEU A 391 1 O LEU A 390 N LYS A 214 SHEET 1 AA6 2 GLN A 278 ASP A 289 0 SHEET 2 AA6 2 GLY A 292 THR A 301 -1 O ILE A 298 N VAL A 281 LINK C SER A 14 N BCSD A 15 1555 1555 1.33 LINK C BCSD A 15 N VAL A 16 1555 1555 1.32 LINK OD2 ASP A 8 K K A 404 1555 1555 2.82 LINK O ASN A 13 K K A 404 1555 1555 2.75 LINK OD1BCSD A 15 K K A 404 1555 1555 3.14 LINK OD1 ASP A 194 NA NA A 405 1555 1555 2.97 LINK O ALA A 199 NA NA A 405 1555 1555 2.97 LINK O3G ATP A 401 MG MG A 402 1555 1555 2.08 LINK O1B ATP A 401 MG MG A 402 1555 1555 2.04 LINK O1B ATP A 401 K K A 404 1555 1555 2.88 LINK O3G ATP A 401 NA NA A 405 1555 1555 2.72 LINK MG MG A 402 O HOH A 538 1555 1555 2.09 LINK MG MG A 402 O HOH A 596 1555 1555 2.10 LINK MG MG A 402 O HOH A 613 1555 1555 2.07 LINK MG MG A 402 O HOH A 677 1555 1555 2.12 LINK K K A 404 O HOH A 596 1555 1555 3.47 LINK K K A 404 O HOH A 676 1555 1555 3.17 LINK NA NA A 405 O HOH A 705 1555 1555 2.97 LINK NA NA A 405 O HOH A 844 1555 1555 2.42 CRYST1 60.806 48.118 63.951 90.00 90.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016446 0.000000 0.000086 0.00000 SCALE2 0.000000 0.020782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015637 0.00000