HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-JUL-21 7RBQ TITLE CO-CRYSTAL STRUCTURE OF HUMAN PRMT9 IN COMPLEX WITH MT556 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN ARGININE N-METHYLTRANSFERASE 10; COMPND 5 EC: 2.1.1.320; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT9, PRMT10; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PRMT9, MT556 INHIBITOR, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZENG,A.DONG,A.HUTCHINSON,A.SEITOVA,Y.LI,Y.D.GAO,S.SCHNEIDER, AUTHOR 2 P.SILIPHAIVANH,D.SLOMAN,B.NICHOLSON,C.FISCHER,J.HICKS,P.J.BROWN, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,L.HALABELIAN,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 2 22-MAY-24 7RBQ 1 REMARK REVDAT 1 11-AUG-21 7RBQ 0 JRNL AUTH H.ZENG,A.DONG,A.HUTCHINSON,A.SEITOVA,Y.LI,Y.D.GAO, JRNL AUTH 2 S.SCHNEIDER,P.SILIPHAIVANH,D.SLOMAN,B.NICHOLSON,C.FISCHER, JRNL AUTH 3 J.HICKS,P.J.BROWN,C.H.ARROWSMITH,A.M.EDWARDS,L.HALABELIAN, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CO-CRYSTAL STRUCTURE OF HUMAN PRMT9 IN COMPLEX WITH MT556 JRNL TITL 2 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 31517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.5170 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.5590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : 2.92000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4790 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4447 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6531 ; 1.124 ; 1.627 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10277 ; 1.111 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 8.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;35.216 ;23.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;15.229 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.618 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5358 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 920 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7RBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33259 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V)PEG3350, 0.1M AMMONIUM REMARK 280 SULPHATE, 0.1M BIS-TRIS PH7.4, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.03050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 127 REMARK 465 VAL A 128 REMARK 465 LYS A 129 REMARK 465 LEU A 130 REMARK 465 ASN A 131 REMARK 465 PRO A 132 REMARK 465 ASP A 133 REMARK 465 PHE A 134 REMARK 465 SER A 135 REMARK 465 ASP A 136 REMARK 465 ALA A 137 REMARK 465 LYS A 138 REMARK 465 GLU A 139 REMARK 465 ASN A 140 REMARK 465 PHE A 141 REMARK 465 TYR A 142 REMARK 465 ARG A 143 REMARK 465 VAL A 144 REMARK 465 ALA A 145 REMARK 465 ASN A 146 REMARK 465 TRP A 147 REMARK 465 LYS A 284 REMARK 465 GLY A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 ALA A 288 REMARK 465 SER A 341 REMARK 465 SER A 342 REMARK 465 VAL A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 GLU A 346 REMARK 465 GLU A 347 REMARK 465 THR A 348 REMARK 465 ILE A 349 REMARK 465 GLU A 475 REMARK 465 CYS A 476 REMARK 465 GLU A 477 REMARK 465 MET A 478 REMARK 465 ASP A 479 REMARK 465 VAL A 480 REMARK 465 ALA A 481 REMARK 465 LYS A 482 REMARK 465 SER A 483 REMARK 465 PHE A 484 REMARK 465 THR A 485 REMARK 465 GLN A 486 REMARK 465 ASN A 487 REMARK 465 LYS A 488 REMARK 465 ASP A 489 REMARK 465 LEU A 490 REMARK 465 LEU A 491 REMARK 465 SER A 492 REMARK 465 LEU A 493 REMARK 465 GLY A 494 REMARK 465 ASN A 495 REMARK 465 GLU A 496 REMARK 465 ALA A 497 REMARK 465 GLU A 498 REMARK 465 LEU A 499 REMARK 465 CYS A 500 REMARK 465 SER A 501 REMARK 465 ALA A 502 REMARK 465 LEU A 503 REMARK 465 ALA A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 GLN A 507 REMARK 465 THR A 508 REMARK 465 SER A 509 REMARK 465 LYS A 510 REMARK 465 PRO A 511 REMARK 465 ASP A 512 REMARK 465 ALA A 513 REMARK 465 VAL A 514 REMARK 465 GLN A 555 REMARK 465 THR A 556 REMARK 465 MET A 557 REMARK 465 ASP A 558 REMARK 465 THR A 559 REMARK 465 HIS A 560 REMARK 465 CYS A 561 REMARK 465 GLN A 562 REMARK 465 ASN A 563 REMARK 465 GLU A 564 REMARK 465 MET A 565 REMARK 465 SER A 566 REMARK 465 SER A 567 REMARK 465 GLY A 568 REMARK 465 THR A 569 REMARK 465 GLY A 570 REMARK 465 GLN A 571 REMARK 465 SER A 572 REMARK 465 ASN A 573 REMARK 465 THR A 574 REMARK 465 VAL A 575 REMARK 465 GLN A 576 REMARK 465 HIS A 639 REMARK 465 VAL A 640 REMARK 465 GLU A 641 REMARK 465 ASP A 642 REMARK 465 GLU A 643 REMARK 465 SER A 644 REMARK 465 ALA A 645 REMARK 465 GLN A 845 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 LYS A 210 CE NZ REMARK 470 LYS A 224 CE NZ REMARK 470 LYS A 230 CE NZ REMARK 470 LYS A 243 CD CE NZ REMARK 470 ILE A 245 CD1 REMARK 470 GLU A 268 OE1 OE2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ASN A 289 CG OD1 ND2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 322 CD CE NZ REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 GLU A 369 OE1 OE2 REMARK 470 GLN A 382 CD OE1 NE2 REMARK 470 LYS A 385 NZ REMARK 470 LYS A 391 CD CE NZ REMARK 470 ASP A 393 OD1 OD2 REMARK 470 LYS A 401 CD CE NZ REMARK 470 ASP A 418 CG OD1 OD2 REMARK 470 ASP A 444 CG OD1 OD2 REMARK 470 LYS A 448 CE NZ REMARK 470 ASP A 451 OD1 OD2 REMARK 470 ASP A 461 CG OD1 OD2 REMARK 470 LEU A 474 CG CD1 CD2 REMARK 470 GLU A 515 CG CD OE1 OE2 REMARK 470 MET A 539 CG SD CE REMARK 470 LEU A 545 CG CD1 CD2 REMARK 470 THR A 549 OG1 CG2 REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 LYS A 552 CD CE NZ REMARK 470 LEU A 579 CG CD1 CD2 REMARK 470 GLU A 589 CD OE1 OE2 REMARK 470 GLN A 603 CG CD OE1 NE2 REMARK 470 GLU A 611 CG CD OE1 OE2 REMARK 470 LYS A 612 CE NZ REMARK 470 ARG A 616 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 624 CG CD OE1 OE2 REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 LEU A 637 CG CD1 CD2 REMARK 470 ARG A 638 CG CD NE CZ NH1 NH2 REMARK 470 MET A 646 CG SD CE REMARK 470 GLN A 648 CG CD OE1 NE2 REMARK 470 ARG A 649 NH1 NH2 REMARK 470 LYS A 651 CE NZ REMARK 470 SER A 652 OG REMARK 470 ASP A 653 CG OD1 OD2 REMARK 470 LYS A 654 CE NZ REMARK 470 GLU A 676 OE1 OE2 REMARK 470 LYS A 677 NZ REMARK 470 ARG A 682 CZ NH1 NH2 REMARK 470 LYS A 690 NZ REMARK 470 GLU A 718 CG CD OE1 OE2 REMARK 470 VAL A 734 CG1 CG2 REMARK 470 SER A 769 OG REMARK 470 ASN A 770 CG OD1 ND2 REMARK 470 LYS A 774 CG CD CE NZ REMARK 470 GLU A 797 CG CD OE1 OE2 REMARK 470 ILE A 820 CD1 REMARK 470 GLU A 823 CG CD OE1 OE2 REMARK 470 GLU A 827 CG CD OE1 OE2 REMARK 470 GLN A 833 CG CD OE1 NE2 REMARK 470 LYS A 836 CG CD CE NZ REMARK 470 SER A 837 OG REMARK 470 SER A 840 OG REMARK 470 LYS A 844 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 261 -56.01 70.02 REMARK 500 CYS A 310 97.76 -162.68 REMARK 500 ARG A 359 33.14 -147.43 REMARK 500 CYS A 462 -71.29 75.53 REMARK 500 LEU A 548 -30.06 -133.83 REMARK 500 THR A 549 79.04 -173.57 REMARK 500 GLN A 603 81.78 -59.30 REMARK 500 PRO A 753 150.29 -46.25 REMARK 500 THR A 768 102.12 -56.92 REMARK 500 SER A 769 -85.78 -67.05 REMARK 500 LYS A 836 -111.85 67.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RBQ A 127 845 UNP Q6P2P2 ANM9_HUMAN 127 845 SEQRES 1 A 719 ALA VAL LYS LEU ASN PRO ASP PHE SER ASP ALA LYS GLU SEQRES 2 A 719 ASN PHE TYR ARG VAL ALA ASN TRP LEU VAL GLU ARG TRP SEQRES 3 A 719 HIS PHE ILE MET LEU ASN ASP THR LYS ARG ASN THR ILE SEQRES 4 A 719 TYR ASN ALA ALA ILE GLN LYS ALA VAL CYS LEU GLY SER SEQRES 5 A 719 LYS SER VAL LEU ASP ILE GLY ALA GLY THR GLY ILE LEU SEQRES 6 A 719 SER MET PHE ALA LYS LYS ALA GLY ALA HIS SER VAL TYR SEQRES 7 A 719 ALA CYS GLU LEU SER LYS THR MET TYR GLU LEU ALA CYS SEQRES 8 A 719 ASP VAL VAL ALA ALA ASN LYS MET GLU ALA GLY ILE LYS SEQRES 9 A 719 LEU LEU HIS THR LYS SER LEU ASP ILE GLU ILE PRO LYS SEQRES 10 A 719 HIS ILE PRO GLU ARG VAL SER LEU VAL VAL THR GLU THR SEQRES 11 A 719 VAL ASP ALA GLY LEU PHE GLY GLU GLY ILE VAL GLU SER SEQRES 12 A 719 LEU ILE HIS ALA TRP GLU HIS LEU LEU LEU GLN PRO LYS SEQRES 13 A 719 THR LYS GLY GLU SER ALA ASN CYS GLU LYS TYR GLY LYS SEQRES 14 A 719 VAL ILE PRO ALA SER ALA VAL ILE PHE GLY MET ALA VAL SEQRES 15 A 719 GLU CYS ALA GLU ILE ARG ARG HIS HIS ARG VAL GLY ILE SEQRES 16 A 719 LYS ASP ILE ALA GLY ILE HIS LEU PRO THR ASN VAL LYS SEQRES 17 A 719 PHE GLN SER PRO ALA TYR SER SER VAL ASP THR GLU GLU SEQRES 18 A 719 THR ILE GLU PRO TYR THR THR GLU LYS MET SER ARG VAL SEQRES 19 A 719 PRO GLY GLY TYR LEU ALA LEU THR GLU CYS PHE GLU ILE SEQRES 20 A 719 MET THR VAL ASP PHE ASN ASN LEU GLN GLU LEU LYS SER SEQRES 21 A 719 LEU ALA THR LYS LYS PRO ASP LYS ILE GLY ILE PRO VAL SEQRES 22 A 719 ILE LYS GLU GLY ILE LEU ASP ALA ILE MET VAL TRP PHE SEQRES 23 A 719 VAL LEU GLN LEU ASP ASP GLU HIS SER LEU SER THR SER SEQRES 24 A 719 PRO SER GLU GLU THR CYS TRP GLU GLN ALA VAL TYR PRO SEQRES 25 A 719 VAL GLN ASP LEU ALA ASP TYR TRP ILE LYS PRO GLY ASP SEQRES 26 A 719 HIS VAL MET MET GLU VAL SER CYS GLN ASP CYS TYR LEU SEQRES 27 A 719 ARG ILE GLN SER ILE SER VAL LEU GLY LEU GLU CYS GLU SEQRES 28 A 719 MET ASP VAL ALA LYS SER PHE THR GLN ASN LYS ASP LEU SEQRES 29 A 719 LEU SER LEU GLY ASN GLU ALA GLU LEU CYS SER ALA LEU SEQRES 30 A 719 ALA ASN LEU GLN THR SER LYS PRO ASP ALA VAL GLU GLN SEQRES 31 A 719 THR CYS ILE LEU GLU SER THR GLU ILE ALA LEU LEU ASN SEQRES 32 A 719 ASN ILE PRO TYR HIS GLU GLY PHE LYS MET ALA MET SER SEQRES 33 A 719 LYS VAL LEU SER SER LEU THR PRO GLU LYS LEU TYR GLN SEQRES 34 A 719 THR MET ASP THR HIS CYS GLN ASN GLU MET SER SER GLY SEQRES 35 A 719 THR GLY GLN SER ASN THR VAL GLN ASN ILE LEU GLU PRO SEQRES 36 A 719 PHE TYR VAL LEU ASP VAL SER GLU GLY PHE SER VAL LEU SEQRES 37 A 719 PRO VAL ILE ALA GLY THR LEU GLY GLN VAL LYS PRO TYR SEQRES 38 A 719 SER SER VAL GLU LYS ASP GLN HIS ARG ILE ALA LEU ASP SEQRES 39 A 719 LEU ILE SER GLU ALA ASN HIS PHE PRO LYS GLU THR LEU SEQRES 40 A 719 GLU PHE TRP LEU ARG HIS VAL GLU ASP GLU SER ALA MET SEQRES 41 A 719 LEU GLN ARG PRO LYS SER ASP LYS LEU TRP SER ILE ILE SEQRES 42 A 719 ILE LEU ASP VAL ILE GLU PRO SER GLY LEU ILE GLN GLN SEQRES 43 A 719 GLU ILE MET GLU LYS ALA ALA ILE SER ARG CYS LEU LEU SEQRES 44 A 719 GLN SER GLY GLY LYS ILE PHE PRO GLN TYR VAL LEU MET SEQRES 45 A 719 PHE GLY LEU LEU VAL GLU SER GLN THR LEU LEU GLU GLU SEQRES 46 A 719 ASN ALA VAL GLN GLY THR GLU ARG THR LEU GLY LEU ASN SEQRES 47 A 719 ILE ALA PRO PHE ILE ASN GLN PHE GLN VAL PRO ILE ARG SEQRES 48 A 719 VAL PHE LEU ASP LEU SER SER LEU PRO CYS ILE PRO LEU SEQRES 49 A 719 SER LYS PRO VAL GLU LEU LEU ARG LEU ASP LEU MET THR SEQRES 50 A 719 PRO TYR LEU ASN THR SER ASN ARG GLU VAL LYS VAL TYR SEQRES 51 A 719 VAL CYS LYS SER GLY ARG LEU THR ALA ILE PRO PHE TRP SEQRES 52 A 719 TYR HIS MET TYR LEU ASP GLU GLU ILE ARG LEU ASP THR SEQRES 53 A 719 SER SER GLU ALA SER HIS TRP LYS GLN ALA ALA VAL VAL SEQRES 54 A 719 LEU ASP ASN PRO ILE GLN VAL GLU MET GLY GLU GLU LEU SEQRES 55 A 719 VAL LEU SER ILE GLN HIS HIS LYS SER ASN VAL SER ILE SEQRES 56 A 719 THR VAL LYS GLN HET 44T A 901 33 HET EDO A 902 4 HET UNX A 903 1 HET UNX A 904 1 HET UNX A 905 1 HET UNX A 906 1 HET UNX A 907 1 HETNAM 44T 7-[5-S-(4-{[(4-ETHYLPYRIDIN-3-YL)METHYL]AMINO}BUTYL)-5- HETNAM 2 44T THIO-BETA-D-RIBOFURANOSYL]-7H-PYRROLO[2,3-D]PYRIMIDIN- HETNAM 3 44T 4-AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 44T C23 H32 N6 O3 S FORMUL 3 EDO C2 H6 O2 FORMUL 4 UNX 5(X) FORMUL 9 HOH *65(H2 O) HELIX 1 AA1 GLU A 150 ASP A 159 1 10 HELIX 2 AA2 ASP A 159 LEU A 176 1 18 HELIX 3 AA3 GLY A 189 ALA A 198 1 10 HELIX 4 AA4 SER A 209 ASN A 223 1 15 HELIX 5 AA5 LYS A 235 ILE A 239 5 5 HELIX 6 AA6 GLY A 265 LEU A 277 1 13 HELIX 7 AA7 ASN A 289 TYR A 293 5 5 HELIX 8 AA8 CYS A 310 ARG A 315 1 6 HELIX 9 AA9 LYS A 356 VAL A 360 5 5 HELIX 10 AB1 ASN A 380 LEU A 387 1 8 HELIX 11 AB2 ALA A 388 LYS A 390 5 3 HELIX 12 AB3 GLU A 521 ASN A 529 1 9 HELIX 13 AB4 ASN A 530 SER A 547 1 18 HELIX 14 AB5 THR A 549 LEU A 553 5 5 HELIX 15 AB6 VAL A 593 GLY A 602 1 10 HELIX 16 AB7 LYS A 612 ASN A 626 1 15 HELIX 17 AB8 GLU A 673 LEU A 684 1 12 HELIX 18 AB9 SER A 705 GLU A 711 1 7 HELIX 19 AC1 THR A 717 LEU A 721 5 5 HELIX 20 AC2 ILE A 725 ASN A 730 1 6 HELIX 21 AC3 GLN A 731 GLN A 733 5 3 HELIX 22 AC4 ASP A 741 LEU A 745 5 5 HELIX 23 AC5 THR A 763 ASN A 767 5 5 SHEET 1 AA1 5 ILE A 229 HIS A 233 0 SHEET 2 AA1 5 SER A 202 GLU A 207 1 N ALA A 205 O LEU A 232 SHEET 3 AA1 5 SER A 180 ILE A 184 1 N ASP A 183 O TYR A 204 SHEET 4 AA1 5 LEU A 251 THR A 254 1 O VAL A 253 N ILE A 184 SHEET 5 AA1 5 LYS A 295 ILE A 297 1 O ILE A 297 N VAL A 252 SHEET 1 AA2 5 THR A 353 GLU A 355 0 SHEET 2 AA2 5 GLN A 434 PRO A 438 -1 O VAL A 436 N THR A 353 SHEET 3 AA2 5 ALA A 407 ASP A 417 -1 N VAL A 410 O ALA A 435 SHEET 4 AA2 5 SER A 300 GLU A 309 -1 N MET A 306 O MET A 409 SHEET 5 AA2 5 PHE A 371 ASP A 377 -1 O ILE A 373 N ILE A 303 SHEET 1 AA3 4 LEU A 365 ALA A 366 0 SHEET 2 AA3 4 SER A 300 GLU A 309 -1 N GLU A 309 O LEU A 365 SHEET 3 AA3 4 ALA A 407 ASP A 417 -1 O MET A 409 N MET A 306 SHEET 4 AA3 4 HIS A 420 SER A 423 -1 O LEU A 422 N LEU A 414 SHEET 1 AA4 2 ASP A 323 ILE A 324 0 SHEET 2 AA4 2 ILE A 327 HIS A 328 -1 O ILE A 327 N ILE A 324 SHEET 1 AA5 2 VAL A 333 GLN A 336 0 SHEET 2 AA5 2 GLN A 516 ILE A 519 1 O CYS A 518 N LYS A 334 SHEET 1 AA6 3 ASP A 393 PRO A 398 0 SHEET 2 AA6 3 HIS A 452 SER A 458 -1 O VAL A 453 N ILE A 397 SHEET 3 AA6 3 ARG A 465 LEU A 472 -1 O ARG A 465 N SER A 458 SHEET 1 AA7 2 GLY A 403 ILE A 404 0 SHEET 2 AA7 2 TRP A 446 ILE A 447 -1 O ILE A 447 N GLY A 403 SHEET 1 AA8 5 GLU A 634 PHE A 635 0 SHEET 2 AA8 5 VAL A 604 SER A 608 1 N SER A 608 O GLU A 634 SHEET 3 AA8 5 PHE A 582 VAL A 587 1 N PHE A 582 O LYS A 605 SHEET 4 AA8 5 TRP A 656 LEU A 661 1 O ILE A 658 N LEU A 585 SHEET 5 AA8 5 LEU A 685 PHE A 692 1 O GLN A 686 N TRP A 656 SHEET 1 AA9 5 ILE A 736 LEU A 740 0 SHEET 2 AA9 5 GLN A 811 VAL A 822 -1 O GLN A 811 N LEU A 740 SHEET 3 AA9 5 GLY A 781 TYR A 793 -1 N ILE A 786 O VAL A 814 SHEET 4 AA9 5 TYR A 695 GLY A 700 -1 N LEU A 697 O HIS A 791 SHEET 5 AA9 5 VAL A 754 ASP A 760 -1 O LEU A 756 N MET A 698 SHEET 1 AB1 4 ILE A 736 LEU A 740 0 SHEET 2 AB1 4 GLN A 811 VAL A 822 -1 O GLN A 811 N LEU A 740 SHEET 3 AB1 4 GLY A 781 TYR A 793 -1 N ILE A 786 O VAL A 814 SHEET 4 AB1 4 ARG A 799 ASP A 801 -1 O LEU A 800 N MET A 792 SHEET 1 AB2 2 VAL A 703 GLU A 704 0 SHEET 2 AB2 2 ILE A 748 PRO A 749 -1 O ILE A 748 N GLU A 704 SHEET 1 AB3 3 ASN A 770 TYR A 776 0 SHEET 2 AB3 3 GLU A 827 HIS A 835 -1 O LEU A 828 N VAL A 775 SHEET 3 AB3 3 ASN A 838 VAL A 843 -1 O SER A 840 N GLN A 833 CISPEP 1 ILE A 241 PRO A 242 0 7.62 CISPEP 2 ILE A 297 PRO A 298 0 4.66 CISPEP 3 PHE A 692 PRO A 693 0 -14.94 CRYST1 64.044 82.061 65.767 90.00 97.71 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015614 0.000000 0.002113 0.00000 SCALE2 0.000000 0.012186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015344 0.00000