data_7RBU
#
_entry.id 7RBU
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7RBU pdb_00007rbu 10.2210/pdb7rbu/pdb
WWPDB D_1000257982 ? ?
EMDB EMD-24402 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2022-05-04
2 'Structure model' 1 1 2022-07-06
3 'Structure model' 1 2 2024-10-09
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' em_admin
5 3 'Structure model' pdbx_entry_details
6 3 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 3 'Structure model' '_em_admin.last_update'
3 3 'Structure model' '_pdbx_entry_details.has_protein_modification'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7RBU
_pdbx_database_status.recvd_initial_deposition_date 2021-07-06
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
EMDB . EMD-24402 'associated EM volume'
EMDB . EMD-24403 'other EM volume'
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email goran.bajic@mssm.edu
_pdbx_contact_author.name_first Goran
_pdbx_contact_author.name_last Bajic
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0003-0480-4324
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Altomare, C.G.' 1 0000-0002-7564-704X
'Bajic, G.' 2 0000-0003-0480-4324
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Mbio
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2150-7511
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 13
_citation.language ?
_citation.page_first e0358021
_citation.page_last e0358021
_citation.title
;Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain.
;
_citation.year 2022
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1128/mbio.03580-21
_citation.pdbx_database_id_PubMed 35467422
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Altomare, C.G.' 1 ?
primary 'Adelsberg, D.C.' 2 ?
primary 'Carreno, J.M.' 3 ?
primary 'Sapse, I.A.' 4 ?
primary 'Amanat, F.' 5 ?
primary 'Ellebedy, A.H.' 6 ?
primary 'Simon, V.' 7 ?
primary 'Krammer, F.' 8 0000-0003-4121-776X
primary 'Bajic, G.' 9 0000-0003-0480-4324
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Spike protein S1' 33417.703 1 ? ?
'N-terminal domain (UNP residues 14-307)' ?
2 polymer man 'PVI.V6-14 Fab heavy chain, variable region' 13932.396 1 ? ? ? ?
3 polymer man 'PVI.V6-14 Fab light chain, variable region' 11385.669 1 ? ? ? ?
4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ?
5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ?
#
_entity_name_com.entity_id 3
_entity_name_com.name 'IGL c713_light_IGKV1-12_IGKJ4'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA
STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ
PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD
SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT
;
;QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA
STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ
PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD
SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT
;
B ?
2 'polypeptide(L)' no no
;QVQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQF
SLKLSSVTAADTAVYYCARCRPEYYFGSGSYLDFDYWGQGTLVTVSS
;
;QVQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQF
SLKLSSVTAADTAVYYCARCRPEYYFGSGSYLDFDYWGQGTLVTVSS
;
H ?
3 'polypeptide(L)' no no
;DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP
EDFATYYCQQANSFPLTFGGGTKVEIK
;
;DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP
EDFATYYCQQANSFPLTFGGGTKVEIK
;
L ?
#
_pdbx_entity_nonpoly.entity_id 5
_pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose
_pdbx_entity_nonpoly.comp_id NAG
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLN n
1 2 CYS n
1 3 VAL n
1 4 ASN n
1 5 LEU n
1 6 THR n
1 7 THR n
1 8 ARG n
1 9 THR n
1 10 GLN n
1 11 LEU n
1 12 PRO n
1 13 PRO n
1 14 ALA n
1 15 TYR n
1 16 THR n
1 17 ASN n
1 18 SER n
1 19 PHE n
1 20 THR n
1 21 ARG n
1 22 GLY n
1 23 VAL n
1 24 TYR n
1 25 TYR n
1 26 PRO n
1 27 ASP n
1 28 LYS n
1 29 VAL n
1 30 PHE n
1 31 ARG n
1 32 SER n
1 33 SER n
1 34 VAL n
1 35 LEU n
1 36 HIS n
1 37 SER n
1 38 THR n
1 39 GLN n
1 40 ASP n
1 41 LEU n
1 42 PHE n
1 43 LEU n
1 44 PRO n
1 45 PHE n
1 46 PHE n
1 47 SER n
1 48 ASN n
1 49 VAL n
1 50 THR n
1 51 TRP n
1 52 PHE n
1 53 HIS n
1 54 ALA n
1 55 ILE n
1 56 HIS n
1 57 VAL n
1 58 SER n
1 59 GLY n
1 60 THR n
1 61 ASN n
1 62 GLY n
1 63 THR n
1 64 LYS n
1 65 ARG n
1 66 PHE n
1 67 ASP n
1 68 ASN n
1 69 PRO n
1 70 VAL n
1 71 LEU n
1 72 PRO n
1 73 PHE n
1 74 ASN n
1 75 ASP n
1 76 GLY n
1 77 VAL n
1 78 TYR n
1 79 PHE n
1 80 ALA n
1 81 SER n
1 82 THR n
1 83 GLU n
1 84 LYS n
1 85 SER n
1 86 ASN n
1 87 ILE n
1 88 ILE n
1 89 ARG n
1 90 GLY n
1 91 TRP n
1 92 ILE n
1 93 PHE n
1 94 GLY n
1 95 THR n
1 96 THR n
1 97 LEU n
1 98 ASP n
1 99 SER n
1 100 LYS n
1 101 THR n
1 102 GLN n
1 103 SER n
1 104 LEU n
1 105 LEU n
1 106 ILE n
1 107 VAL n
1 108 ASN n
1 109 ASN n
1 110 ALA n
1 111 THR n
1 112 ASN n
1 113 VAL n
1 114 VAL n
1 115 ILE n
1 116 LYS n
1 117 VAL n
1 118 CYS n
1 119 GLU n
1 120 PHE n
1 121 GLN n
1 122 PHE n
1 123 CYS n
1 124 ASN n
1 125 ASP n
1 126 PRO n
1 127 PHE n
1 128 LEU n
1 129 GLY n
1 130 VAL n
1 131 TYR n
1 132 TYR n
1 133 HIS n
1 134 LYS n
1 135 ASN n
1 136 ASN n
1 137 LYS n
1 138 SER n
1 139 TRP n
1 140 MET n
1 141 GLU n
1 142 SER n
1 143 GLU n
1 144 PHE n
1 145 ARG n
1 146 VAL n
1 147 TYR n
1 148 SER n
1 149 SER n
1 150 ALA n
1 151 ASN n
1 152 ASN n
1 153 CYS n
1 154 THR n
1 155 PHE n
1 156 GLU n
1 157 TYR n
1 158 VAL n
1 159 SER n
1 160 GLN n
1 161 PRO n
1 162 PHE n
1 163 LEU n
1 164 MET n
1 165 ASP n
1 166 LEU n
1 167 GLU n
1 168 GLY n
1 169 LYS n
1 170 GLN n
1 171 GLY n
1 172 ASN n
1 173 PHE n
1 174 LYS n
1 175 ASN n
1 176 LEU n
1 177 ARG n
1 178 GLU n
1 179 PHE n
1 180 VAL n
1 181 PHE n
1 182 LYS n
1 183 ASN n
1 184 ILE n
1 185 ASP n
1 186 GLY n
1 187 TYR n
1 188 PHE n
1 189 LYS n
1 190 ILE n
1 191 TYR n
1 192 SER n
1 193 LYS n
1 194 HIS n
1 195 THR n
1 196 PRO n
1 197 ILE n
1 198 ASN n
1 199 LEU n
1 200 VAL n
1 201 ARG n
1 202 ASP n
1 203 LEU n
1 204 PRO n
1 205 GLN n
1 206 GLY n
1 207 PHE n
1 208 SER n
1 209 ALA n
1 210 LEU n
1 211 GLU n
1 212 PRO n
1 213 LEU n
1 214 VAL n
1 215 ASP n
1 216 LEU n
1 217 PRO n
1 218 ILE n
1 219 GLY n
1 220 ILE n
1 221 ASN n
1 222 ILE n
1 223 THR n
1 224 ARG n
1 225 PHE n
1 226 GLN n
1 227 THR n
1 228 LEU n
1 229 LEU n
1 230 ALA n
1 231 LEU n
1 232 HIS n
1 233 ARG n
1 234 SER n
1 235 TYR n
1 236 LEU n
1 237 THR n
1 238 PRO n
1 239 GLY n
1 240 ASP n
1 241 SER n
1 242 SER n
1 243 SER n
1 244 GLY n
1 245 TRP n
1 246 THR n
1 247 ALA n
1 248 GLY n
1 249 ALA n
1 250 ALA n
1 251 ALA n
1 252 TYR n
1 253 TYR n
1 254 VAL n
1 255 GLY n
1 256 TYR n
1 257 LEU n
1 258 GLN n
1 259 PRO n
1 260 ARG n
1 261 THR n
1 262 PHE n
1 263 LEU n
1 264 LEU n
1 265 LYS n
1 266 TYR n
1 267 ASN n
1 268 GLU n
1 269 ASN n
1 270 GLY n
1 271 THR n
1 272 ILE n
1 273 THR n
1 274 ASP n
1 275 ALA n
1 276 VAL n
1 277 ASP n
1 278 CYS n
1 279 ALA n
1 280 LEU n
1 281 ASP n
1 282 PRO n
1 283 LEU n
1 284 SER n
1 285 GLU n
1 286 THR n
1 287 LYS n
1 288 CYS n
1 289 THR n
1 290 LEU n
1 291 LYS n
1 292 SER n
1 293 PHE n
1 294 THR n
2 1 GLN n
2 2 VAL n
2 3 GLN n
2 4 LEU n
2 5 GLN n
2 6 GLU n
2 7 SER n
2 8 GLY n
2 9 PRO n
2 10 GLY n
2 11 LEU n
2 12 VAL n
2 13 LYS n
2 14 PRO n
2 15 SER n
2 16 GLU n
2 17 THR n
2 18 LEU n
2 19 SER n
2 20 LEU n
2 21 THR n
2 22 CYS n
2 23 THR n
2 24 VAL n
2 25 SER n
2 26 GLY n
2 27 GLY n
2 28 SER n
2 29 ILE n
2 30 SER n
2 31 SER n
2 32 SER n
2 33 SER n
2 34 TYR n
2 35 TYR n
2 36 TRP n
2 37 GLY n
2 38 TRP n
2 39 ILE n
2 40 ARG n
2 41 GLN n
2 42 PRO n
2 43 PRO n
2 44 GLY n
2 45 LYS n
2 46 GLY n
2 47 LEU n
2 48 GLU n
2 49 TRP n
2 50 ILE n
2 51 GLY n
2 52 SER n
2 53 ILE n
2 54 TYR n
2 55 TYR n
2 56 SER n
2 57 GLY n
2 58 SER n
2 59 THR n
2 60 TYR n
2 61 TYR n
2 62 ASN n
2 63 PRO n
2 64 SER n
2 65 LEU n
2 66 LYS n
2 67 SER n
2 68 ARG n
2 69 VAL n
2 70 THR n
2 71 ILE n
2 72 SER n
2 73 VAL n
2 74 ASP n
2 75 THR n
2 76 SER n
2 77 LYS n
2 78 ASN n
2 79 GLN n
2 80 PHE n
2 81 SER n
2 82 LEU n
2 83 LYS n
2 84 LEU n
2 85 SER n
2 86 SER n
2 87 VAL n
2 88 THR n
2 89 ALA n
2 90 ALA n
2 91 ASP n
2 92 THR n
2 93 ALA n
2 94 VAL n
2 95 TYR n
2 96 TYR n
2 97 CYS n
2 98 ALA n
2 99 ARG n
2 100 CYS n
2 101 ARG n
2 102 PRO n
2 103 GLU n
2 104 TYR n
2 105 TYR n
2 106 PHE n
2 107 GLY n
2 108 SER n
2 109 GLY n
2 110 SER n
2 111 TYR n
2 112 LEU n
2 113 ASP n
2 114 PHE n
2 115 ASP n
2 116 TYR n
2 117 TRP n
2 118 GLY n
2 119 GLN n
2 120 GLY n
2 121 THR n
2 122 LEU n
2 123 VAL n
2 124 THR n
2 125 VAL n
2 126 SER n
2 127 SER n
3 1 ASP n
3 2 ILE n
3 3 GLN n
3 4 MET n
3 5 THR n
3 6 GLN n
3 7 SER n
3 8 PRO n
3 9 SER n
3 10 SER n
3 11 VAL n
3 12 SER n
3 13 ALA n
3 14 SER n
3 15 VAL n
3 16 GLY n
3 17 ASP n
3 18 ARG n
3 19 VAL n
3 20 THR n
3 21 ILE n
3 22 THR n
3 23 CYS n
3 24 ARG n
3 25 ALA n
3 26 SER n
3 27 GLN n
3 28 GLY n
3 29 ILE n
3 30 SER n
3 31 SER n
3 32 TRP n
3 33 LEU n
3 34 ALA n
3 35 TRP n
3 36 TYR n
3 37 GLN n
3 38 GLN n
3 39 LYS n
3 40 PRO n
3 41 GLY n
3 42 LYS n
3 43 ALA n
3 44 PRO n
3 45 LYS n
3 46 LEU n
3 47 LEU n
3 48 ILE n
3 49 TYR n
3 50 ALA n
3 51 ALA n
3 52 SER n
3 53 SER n
3 54 LEU n
3 55 GLN n
3 56 SER n
3 57 GLY n
3 58 VAL n
3 59 PRO n
3 60 SER n
3 61 ARG n
3 62 PHE n
3 63 SER n
3 64 GLY n
3 65 SER n
3 66 GLY n
3 67 SER n
3 68 GLY n
3 69 THR n
3 70 ASP n
3 71 PHE n
3 72 THR n
3 73 LEU n
3 74 THR n
3 75 ILE n
3 76 SER n
3 77 SER n
3 78 LEU n
3 79 GLN n
3 80 PRO n
3 81 GLU n
3 82 ASP n
3 83 PHE n
3 84 ALA n
3 85 THR n
3 86 TYR n
3 87 TYR n
3 88 CYS n
3 89 GLN n
3 90 GLN n
3 91 ALA n
3 92 ASN n
3 93 SER n
3 94 PHE n
3 95 PRO n
3 96 LEU n
3 97 THR n
3 98 PHE n
3 99 GLY n
3 100 GLY n
3 101 GLY n
3 102 THR n
3 103 LYS n
3 104 VAL n
3 105 GLU n
3 106 ILE n
3 107 LYS n
#
loop_
_entity_src_gen.entity_id
_entity_src_gen.pdbx_src_id
_entity_src_gen.pdbx_alt_source_flag
_entity_src_gen.pdbx_seq_type
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_genus
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.gene_src_species
_entity_src_gen.gene_src_strain
_entity_src_gen.gene_src_tissue
_entity_src_gen.gene_src_tissue_fraction
_entity_src_gen.gene_src_details
_entity_src_gen.pdbx_gene_src_fragment
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_variant
_entity_src_gen.pdbx_gene_src_cell_line
_entity_src_gen.pdbx_gene_src_atcc
_entity_src_gen.pdbx_gene_src_organ
_entity_src_gen.pdbx_gene_src_organelle
_entity_src_gen.pdbx_gene_src_cell
_entity_src_gen.pdbx_gene_src_cellular_location
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
_entity_src_gen.host_org_genus
_entity_src_gen.pdbx_host_org_gene
_entity_src_gen.pdbx_host_org_organ
_entity_src_gen.host_org_species
_entity_src_gen.pdbx_host_org_tissue
_entity_src_gen.pdbx_host_org_tissue_fraction
_entity_src_gen.pdbx_host_org_strain
_entity_src_gen.pdbx_host_org_variant
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_atcc
_entity_src_gen.pdbx_host_org_culture_collection
_entity_src_gen.pdbx_host_org_cell
_entity_src_gen.pdbx_host_org_organelle
_entity_src_gen.pdbx_host_org_cellular_location
_entity_src_gen.pdbx_host_org_vector_type
_entity_src_gen.pdbx_host_org_vector
_entity_src_gen.host_org_details
_entity_src_gen.expression_system_id
_entity_src_gen.plasmid_name
_entity_src_gen.plasmid_details
_entity_src_gen.pdbx_description
1 1 sample 'Biological sequence' 1 294 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ?
? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? Expi293 ? ? ? ? ? ? ? ? ? ? ? ?
2 1 sample 'Biological sequence' 1 127 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ?
? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? Expi293 ? ? ? ? ? ? ? ? ? ? ? ?
3 1 sample 'Biological sequence' 1 107 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ?
? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? Expi293 ? ? Expi293 ? ? ? ? ? ? ? ? ?
#
_pdbx_entity_branch.entity_id 4
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 4 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0
3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 4
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 NAG
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 NAG
_pdbx_entity_branch_link.atom_id_2 O4
_pdbx_entity_branch_link.leaving_atom_id_2 HO4
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLN 1 14 14 GLN GLN B . n
A 1 2 CYS 2 15 15 CYS CYS B . n
A 1 3 VAL 3 16 16 VAL VAL B . n
A 1 4 ASN 4 17 17 ASN ASN B . n
A 1 5 LEU 5 18 18 LEU LEU B . n
A 1 6 THR 6 19 19 THR THR B . n
A 1 7 THR 7 20 20 THR THR B . n
A 1 8 ARG 8 21 21 ARG ARG B . n
A 1 9 THR 9 22 22 THR THR B . n
A 1 10 GLN 10 23 23 GLN GLN B . n
A 1 11 LEU 11 24 24 LEU LEU B . n
A 1 12 PRO 12 25 25 PRO PRO B . n
A 1 13 PRO 13 26 26 PRO PRO B . n
A 1 14 ALA 14 27 27 ALA ALA B . n
A 1 15 TYR 15 28 28 TYR TYR B . n
A 1 16 THR 16 29 29 THR THR B . n
A 1 17 ASN 17 30 30 ASN ASN B . n
A 1 18 SER 18 31 31 SER SER B . n
A 1 19 PHE 19 32 32 PHE PHE B . n
A 1 20 THR 20 33 33 THR THR B . n
A 1 21 ARG 21 34 34 ARG ARG B . n
A 1 22 GLY 22 35 35 GLY GLY B . n
A 1 23 VAL 23 36 36 VAL VAL B . n
A 1 24 TYR 24 37 37 TYR TYR B . n
A 1 25 TYR 25 38 38 TYR TYR B . n
A 1 26 PRO 26 39 39 PRO PRO B . n
A 1 27 ASP 27 40 40 ASP ASP B . n
A 1 28 LYS 28 41 41 LYS LYS B . n
A 1 29 VAL 29 42 42 VAL VAL B . n
A 1 30 PHE 30 43 43 PHE PHE B . n
A 1 31 ARG 31 44 44 ARG ARG B . n
A 1 32 SER 32 45 45 SER SER B . n
A 1 33 SER 33 46 46 SER SER B . n
A 1 34 VAL 34 47 47 VAL VAL B . n
A 1 35 LEU 35 48 48 LEU LEU B . n
A 1 36 HIS 36 49 49 HIS HIS B . n
A 1 37 SER 37 50 50 SER SER B . n
A 1 38 THR 38 51 51 THR THR B . n
A 1 39 GLN 39 52 52 GLN GLN B . n
A 1 40 ASP 40 53 53 ASP ASP B . n
A 1 41 LEU 41 54 54 LEU LEU B . n
A 1 42 PHE 42 55 55 PHE PHE B . n
A 1 43 LEU 43 56 56 LEU LEU B . n
A 1 44 PRO 44 57 57 PRO PRO B . n
A 1 45 PHE 45 58 58 PHE PHE B . n
A 1 46 PHE 46 59 59 PHE PHE B . n
A 1 47 SER 47 60 60 SER SER B . n
A 1 48 ASN 48 61 61 ASN ASN B . n
A 1 49 VAL 49 62 62 VAL VAL B . n
A 1 50 THR 50 63 63 THR THR B . n
A 1 51 TRP 51 64 64 TRP TRP B . n
A 1 52 PHE 52 65 65 PHE PHE B . n
A 1 53 HIS 53 66 66 HIS HIS B . n
A 1 54 ALA 54 67 67 ALA ALA B . n
A 1 55 ILE 55 68 68 ILE ILE B . n
A 1 56 HIS 56 69 69 HIS HIS B . n
A 1 57 VAL 57 70 70 VAL VAL B . n
A 1 58 SER 58 71 71 SER SER B . n
A 1 59 GLY 59 72 72 GLY GLY B . n
A 1 60 THR 60 73 73 THR THR B . n
A 1 61 ASN 61 74 74 ASN ASN B . n
A 1 62 GLY 62 75 75 GLY GLY B . n
A 1 63 THR 63 76 76 THR THR B . n
A 1 64 LYS 64 77 77 LYS LYS B . n
A 1 65 ARG 65 78 78 ARG ARG B . n
A 1 66 PHE 66 79 79 PHE PHE B . n
A 1 67 ASP 67 80 80 ASP ASP B . n
A 1 68 ASN 68 81 81 ASN ASN B . n
A 1 69 PRO 69 82 82 PRO PRO B . n
A 1 70 VAL 70 83 83 VAL VAL B . n
A 1 71 LEU 71 84 84 LEU LEU B . n
A 1 72 PRO 72 85 85 PRO PRO B . n
A 1 73 PHE 73 86 86 PHE PHE B . n
A 1 74 ASN 74 87 87 ASN ASN B . n
A 1 75 ASP 75 88 88 ASP ASP B . n
A 1 76 GLY 76 89 89 GLY GLY B . n
A 1 77 VAL 77 90 90 VAL VAL B . n
A 1 78 TYR 78 91 91 TYR TYR B . n
A 1 79 PHE 79 92 92 PHE PHE B . n
A 1 80 ALA 80 93 93 ALA ALA B . n
A 1 81 SER 81 94 94 SER SER B . n
A 1 82 THR 82 95 95 THR THR B . n
A 1 83 GLU 83 96 96 GLU GLU B . n
A 1 84 LYS 84 97 97 LYS LYS B . n
A 1 85 SER 85 98 98 SER SER B . n
A 1 86 ASN 86 99 99 ASN ASN B . n
A 1 87 ILE 87 100 100 ILE ILE B . n
A 1 88 ILE 88 101 101 ILE ILE B . n
A 1 89 ARG 89 102 102 ARG ARG B . n
A 1 90 GLY 90 103 103 GLY GLY B . n
A 1 91 TRP 91 104 104 TRP TRP B . n
A 1 92 ILE 92 105 105 ILE ILE B . n
A 1 93 PHE 93 106 106 PHE PHE B . n
A 1 94 GLY 94 107 107 GLY GLY B . n
A 1 95 THR 95 108 108 THR THR B . n
A 1 96 THR 96 109 109 THR THR B . n
A 1 97 LEU 97 110 110 LEU LEU B . n
A 1 98 ASP 98 111 111 ASP ASP B . n
A 1 99 SER 99 112 112 SER SER B . n
A 1 100 LYS 100 113 113 LYS LYS B . n
A 1 101 THR 101 114 114 THR THR B . n
A 1 102 GLN 102 115 115 GLN GLN B . n
A 1 103 SER 103 116 116 SER SER B . n
A 1 104 LEU 104 117 117 LEU LEU B . n
A 1 105 LEU 105 118 118 LEU LEU B . n
A 1 106 ILE 106 119 119 ILE ILE B . n
A 1 107 VAL 107 120 120 VAL VAL B . n
A 1 108 ASN 108 121 121 ASN ASN B . n
A 1 109 ASN 109 122 122 ASN ASN B . n
A 1 110 ALA 110 123 123 ALA ALA B . n
A 1 111 THR 111 124 124 THR THR B . n
A 1 112 ASN 112 125 125 ASN ASN B . n
A 1 113 VAL 113 126 126 VAL VAL B . n
A 1 114 VAL 114 127 127 VAL VAL B . n
A 1 115 ILE 115 128 128 ILE ILE B . n
A 1 116 LYS 116 129 129 LYS LYS B . n
A 1 117 VAL 117 130 130 VAL VAL B . n
A 1 118 CYS 118 131 131 CYS CYS B . n
A 1 119 GLU 119 132 132 GLU GLU B . n
A 1 120 PHE 120 133 133 PHE PHE B . n
A 1 121 GLN 121 134 134 GLN GLN B . n
A 1 122 PHE 122 135 135 PHE PHE B . n
A 1 123 CYS 123 136 136 CYS CYS B . n
A 1 124 ASN 124 137 137 ASN ASN B . n
A 1 125 ASP 125 138 138 ASP ASP B . n
A 1 126 PRO 126 139 139 PRO PRO B . n
A 1 127 PHE 127 140 140 PHE PHE B . n
A 1 128 LEU 128 141 141 LEU LEU B . n
A 1 129 GLY 129 142 142 GLY GLY B . n
A 1 130 VAL 130 143 143 VAL VAL B . n
A 1 131 TYR 131 144 144 TYR TYR B . n
A 1 132 TYR 132 145 145 TYR TYR B . n
A 1 133 HIS 133 146 146 HIS HIS B . n
A 1 134 LYS 134 147 147 LYS LYS B . n
A 1 135 ASN 135 148 148 ASN ASN B . n
A 1 136 ASN 136 149 149 ASN ASN B . n
A 1 137 LYS 137 150 150 LYS LYS B . n
A 1 138 SER 138 151 151 SER SER B . n
A 1 139 TRP 139 152 152 TRP TRP B . n
A 1 140 MET 140 153 153 MET MET B . n
A 1 141 GLU 141 154 154 GLU GLU B . n
A 1 142 SER 142 155 155 SER SER B . n
A 1 143 GLU 143 156 156 GLU GLU B . n
A 1 144 PHE 144 157 157 PHE PHE B . n
A 1 145 ARG 145 158 158 ARG ARG B . n
A 1 146 VAL 146 159 159 VAL VAL B . n
A 1 147 TYR 147 160 160 TYR TYR B . n
A 1 148 SER 148 161 161 SER SER B . n
A 1 149 SER 149 162 162 SER SER B . n
A 1 150 ALA 150 163 163 ALA ALA B . n
A 1 151 ASN 151 164 164 ASN ASN B . n
A 1 152 ASN 152 165 165 ASN ASN B . n
A 1 153 CYS 153 166 166 CYS CYS B . n
A 1 154 THR 154 167 167 THR THR B . n
A 1 155 PHE 155 168 168 PHE PHE B . n
A 1 156 GLU 156 169 169 GLU GLU B . n
A 1 157 TYR 157 170 170 TYR TYR B . n
A 1 158 VAL 158 171 171 VAL VAL B . n
A 1 159 SER 159 172 172 SER SER B . n
A 1 160 GLN 160 173 173 GLN GLN B . n
A 1 161 PRO 161 174 174 PRO PRO B . n
A 1 162 PHE 162 175 175 PHE PHE B . n
A 1 163 LEU 163 176 176 LEU LEU B . n
A 1 164 MET 164 177 177 MET MET B . n
A 1 165 ASP 165 178 178 ASP ASP B . n
A 1 166 LEU 166 179 179 LEU LEU B . n
A 1 167 GLU 167 180 180 GLU GLU B . n
A 1 168 GLY 168 181 181 GLY GLY B . n
A 1 169 LYS 169 182 182 LYS LYS B . n
A 1 170 GLN 170 183 183 GLN GLN B . n
A 1 171 GLY 171 184 184 GLY GLY B . n
A 1 172 ASN 172 185 185 ASN ASN B . n
A 1 173 PHE 173 186 186 PHE PHE B . n
A 1 174 LYS 174 187 187 LYS LYS B . n
A 1 175 ASN 175 188 188 ASN ASN B . n
A 1 176 LEU 176 189 189 LEU LEU B . n
A 1 177 ARG 177 190 190 ARG ARG B . n
A 1 178 GLU 178 191 191 GLU GLU B . n
A 1 179 PHE 179 192 192 PHE PHE B . n
A 1 180 VAL 180 193 193 VAL VAL B . n
A 1 181 PHE 181 194 194 PHE PHE B . n
A 1 182 LYS 182 195 195 LYS LYS B . n
A 1 183 ASN 183 196 196 ASN ASN B . n
A 1 184 ILE 184 197 197 ILE ILE B . n
A 1 185 ASP 185 198 198 ASP ASP B . n
A 1 186 GLY 186 199 199 GLY GLY B . n
A 1 187 TYR 187 200 200 TYR TYR B . n
A 1 188 PHE 188 201 201 PHE PHE B . n
A 1 189 LYS 189 202 202 LYS LYS B . n
A 1 190 ILE 190 203 203 ILE ILE B . n
A 1 191 TYR 191 204 204 TYR TYR B . n
A 1 192 SER 192 205 205 SER SER B . n
A 1 193 LYS 193 206 206 LYS LYS B . n
A 1 194 HIS 194 207 207 HIS HIS B . n
A 1 195 THR 195 208 208 THR THR B . n
A 1 196 PRO 196 209 209 PRO PRO B . n
A 1 197 ILE 197 210 210 ILE ILE B . n
A 1 198 ASN 198 211 211 ASN ASN B . n
A 1 199 LEU 199 212 212 LEU LEU B . n
A 1 200 VAL 200 213 213 VAL VAL B . n
A 1 201 ARG 201 214 214 ARG ARG B . n
A 1 202 ASP 202 215 215 ASP ASP B . n
A 1 203 LEU 203 216 216 LEU LEU B . n
A 1 204 PRO 204 217 217 PRO PRO B . n
A 1 205 GLN 205 218 218 GLN GLN B . n
A 1 206 GLY 206 219 219 GLY GLY B . n
A 1 207 PHE 207 220 220 PHE PHE B . n
A 1 208 SER 208 221 221 SER SER B . n
A 1 209 ALA 209 222 222 ALA ALA B . n
A 1 210 LEU 210 223 223 LEU LEU B . n
A 1 211 GLU 211 224 224 GLU GLU B . n
A 1 212 PRO 212 225 225 PRO PRO B . n
A 1 213 LEU 213 226 226 LEU LEU B . n
A 1 214 VAL 214 227 227 VAL VAL B . n
A 1 215 ASP 215 228 228 ASP ASP B . n
A 1 216 LEU 216 229 229 LEU LEU B . n
A 1 217 PRO 217 230 230 PRO PRO B . n
A 1 218 ILE 218 231 231 ILE ILE B . n
A 1 219 GLY 219 232 232 GLY GLY B . n
A 1 220 ILE 220 233 233 ILE ILE B . n
A 1 221 ASN 221 234 234 ASN ASN B . n
A 1 222 ILE 222 235 235 ILE ILE B . n
A 1 223 THR 223 236 236 THR THR B . n
A 1 224 ARG 224 237 237 ARG ARG B . n
A 1 225 PHE 225 238 238 PHE PHE B . n
A 1 226 GLN 226 239 239 GLN GLN B . n
A 1 227 THR 227 240 240 THR THR B . n
A 1 228 LEU 228 241 241 LEU LEU B . n
A 1 229 LEU 229 242 242 LEU LEU B . n
A 1 230 ALA 230 243 243 ALA ALA B . n
A 1 231 LEU 231 244 244 LEU LEU B . n
A 1 232 HIS 232 245 245 HIS HIS B . n
A 1 233 ARG 233 246 246 ARG ARG B . n
A 1 234 SER 234 247 247 SER SER B . n
A 1 235 TYR 235 248 248 TYR TYR B . n
A 1 236 LEU 236 249 249 LEU LEU B . n
A 1 237 THR 237 250 250 THR THR B . n
A 1 238 PRO 238 251 251 PRO PRO B . n
A 1 239 GLY 239 252 252 GLY GLY B . n
A 1 240 ASP 240 253 253 ASP ASP B . n
A 1 241 SER 241 254 254 SER SER B . n
A 1 242 SER 242 255 255 SER SER B . n
A 1 243 SER 243 256 256 SER SER B . n
A 1 244 GLY 244 257 257 GLY GLY B . n
A 1 245 TRP 245 258 258 TRP TRP B . n
A 1 246 THR 246 259 259 THR THR B . n
A 1 247 ALA 247 260 260 ALA ALA B . n
A 1 248 GLY 248 261 261 GLY GLY B . n
A 1 249 ALA 249 262 262 ALA ALA B . n
A 1 250 ALA 250 263 263 ALA ALA B . n
A 1 251 ALA 251 264 264 ALA ALA B . n
A 1 252 TYR 252 265 265 TYR TYR B . n
A 1 253 TYR 253 266 266 TYR TYR B . n
A 1 254 VAL 254 267 267 VAL VAL B . n
A 1 255 GLY 255 268 268 GLY GLY B . n
A 1 256 TYR 256 269 269 TYR TYR B . n
A 1 257 LEU 257 270 270 LEU LEU B . n
A 1 258 GLN 258 271 271 GLN GLN B . n
A 1 259 PRO 259 272 272 PRO PRO B . n
A 1 260 ARG 260 273 273 ARG ARG B . n
A 1 261 THR 261 274 274 THR THR B . n
A 1 262 PHE 262 275 275 PHE PHE B . n
A 1 263 LEU 263 276 276 LEU LEU B . n
A 1 264 LEU 264 277 277 LEU LEU B . n
A 1 265 LYS 265 278 278 LYS LYS B . n
A 1 266 TYR 266 279 279 TYR TYR B . n
A 1 267 ASN 267 280 280 ASN ASN B . n
A 1 268 GLU 268 281 281 GLU GLU B . n
A 1 269 ASN 269 282 282 ASN ASN B . n
A 1 270 GLY 270 283 283 GLY GLY B . n
A 1 271 THR 271 284 284 THR THR B . n
A 1 272 ILE 272 285 285 ILE ILE B . n
A 1 273 THR 273 286 286 THR THR B . n
A 1 274 ASP 274 287 287 ASP ASP B . n
A 1 275 ALA 275 288 288 ALA ALA B . n
A 1 276 VAL 276 289 289 VAL VAL B . n
A 1 277 ASP 277 290 290 ASP ASP B . n
A 1 278 CYS 278 291 291 CYS CYS B . n
A 1 279 ALA 279 292 ? ? ? B . n
A 1 280 LEU 280 293 ? ? ? B . n
A 1 281 ASP 281 294 ? ? ? B . n
A 1 282 PRO 282 295 ? ? ? B . n
A 1 283 LEU 283 296 ? ? ? B . n
A 1 284 SER 284 297 ? ? ? B . n
A 1 285 GLU 285 298 ? ? ? B . n
A 1 286 THR 286 299 ? ? ? B . n
A 1 287 LYS 287 300 ? ? ? B . n
A 1 288 CYS 288 301 ? ? ? B . n
A 1 289 THR 289 302 ? ? ? B . n
A 1 290 LEU 290 303 ? ? ? B . n
A 1 291 LYS 291 304 ? ? ? B . n
A 1 292 SER 292 305 ? ? ? B . n
A 1 293 PHE 293 306 ? ? ? B . n
A 1 294 THR 294 307 ? ? ? B . n
B 2 1 GLN 1 1 ? ? ? H . n
B 2 2 VAL 2 2 2 VAL VAL H . n
B 2 3 GLN 3 3 3 GLN GLN H . n
B 2 4 LEU 4 4 4 LEU LEU H . n
B 2 5 GLN 5 5 5 GLN GLN H . n
B 2 6 GLU 6 6 6 GLU GLU H . n
B 2 7 SER 7 7 7 SER SER H . n
B 2 8 GLY 8 8 8 GLY GLY H . n
B 2 9 PRO 9 9 9 PRO PRO H . n
B 2 10 GLY 10 10 10 GLY GLY H . n
B 2 11 LEU 11 11 11 LEU LEU H . n
B 2 12 VAL 12 12 12 VAL VAL H . n
B 2 13 LYS 13 13 13 LYS LYS H . n
B 2 14 PRO 14 14 14 PRO PRO H . n
B 2 15 SER 15 15 15 SER SER H . n
B 2 16 GLU 16 16 16 GLU GLU H . n
B 2 17 THR 17 17 17 THR THR H . n
B 2 18 LEU 18 18 18 LEU LEU H . n
B 2 19 SER 19 19 19 SER SER H . n
B 2 20 LEU 20 20 20 LEU LEU H . n
B 2 21 THR 21 21 21 THR THR H . n
B 2 22 CYS 22 22 22 CYS CYS H . n
B 2 23 THR 23 23 23 THR THR H . n
B 2 24 VAL 24 24 24 VAL VAL H . n
B 2 25 SER 25 25 25 SER SER H . n
B 2 26 GLY 26 26 26 GLY GLY H . n
B 2 27 GLY 27 27 27 GLY GLY H . n
B 2 28 SER 28 28 28 SER SER H . n
B 2 29 ILE 29 29 29 ILE ILE H . n
B 2 30 SER 30 30 30 SER SER H . n
B 2 31 SER 31 31 31 SER SER H . n
B 2 32 SER 32 32 32 SER SER H . n
B 2 33 SER 33 33 33 SER SER H . n
B 2 34 TYR 34 34 34 TYR TYR H . n
B 2 35 TYR 35 35 35 TYR TYR H . n
B 2 36 TRP 36 36 36 TRP TRP H . n
B 2 37 GLY 37 37 37 GLY GLY H . n
B 2 38 TRP 38 38 38 TRP TRP H . n
B 2 39 ILE 39 39 39 ILE ILE H . n
B 2 40 ARG 40 40 40 ARG ARG H . n
B 2 41 GLN 41 41 41 GLN GLN H . n
B 2 42 PRO 42 42 42 PRO PRO H . n
B 2 43 PRO 43 43 43 PRO PRO H . n
B 2 44 GLY 44 44 44 GLY GLY H . n
B 2 45 LYS 45 45 45 LYS LYS H . n
B 2 46 GLY 46 46 46 GLY GLY H . n
B 2 47 LEU 47 47 47 LEU LEU H . n
B 2 48 GLU 48 48 48 GLU GLU H . n
B 2 49 TRP 49 49 49 TRP TRP H . n
B 2 50 ILE 50 50 50 ILE ILE H . n
B 2 51 GLY 51 51 51 GLY GLY H . n
B 2 52 SER 52 52 52 SER SER H . n
B 2 53 ILE 53 53 53 ILE ILE H . n
B 2 54 TYR 54 54 54 TYR TYR H . n
B 2 55 TYR 55 55 55 TYR TYR H . n
B 2 56 SER 56 56 56 SER SER H . n
B 2 57 GLY 57 57 57 GLY GLY H . n
B 2 58 SER 58 58 58 SER SER H . n
B 2 59 THR 59 59 59 THR THR H . n
B 2 60 TYR 60 60 60 TYR TYR H . n
B 2 61 TYR 61 61 61 TYR TYR H . n
B 2 62 ASN 62 62 62 ASN ASN H . n
B 2 63 PRO 63 63 63 PRO PRO H . n
B 2 64 SER 64 64 64 SER SER H . n
B 2 65 LEU 65 65 65 LEU LEU H . n
B 2 66 LYS 66 66 66 LYS LYS H . n
B 2 67 SER 67 67 67 SER SER H . n
B 2 68 ARG 68 68 68 ARG ARG H . n
B 2 69 VAL 69 69 69 VAL VAL H . n
B 2 70 THR 70 70 70 THR THR H . n
B 2 71 ILE 71 71 71 ILE ILE H . n
B 2 72 SER 72 72 72 SER SER H . n
B 2 73 VAL 73 73 73 VAL VAL H . n
B 2 74 ASP 74 74 74 ASP ASP H . n
B 2 75 THR 75 75 75 THR THR H . n
B 2 76 SER 76 76 76 SER SER H . n
B 2 77 LYS 77 77 77 LYS LYS H . n
B 2 78 ASN 78 78 78 ASN ASN H . n
B 2 79 GLN 79 79 79 GLN GLN H . n
B 2 80 PHE 80 80 80 PHE PHE H . n
B 2 81 SER 81 81 81 SER SER H . n
B 2 82 LEU 82 82 82 LEU LEU H . n
B 2 83 LYS 83 83 83 LYS LYS H . n
B 2 84 LEU 84 84 84 LEU LEU H . n
B 2 85 SER 85 85 85 SER SER H . n
B 2 86 SER 86 86 86 SER SER H . n
B 2 87 VAL 87 87 87 VAL VAL H . n
B 2 88 THR 88 88 88 THR THR H . n
B 2 89 ALA 89 89 89 ALA ALA H . n
B 2 90 ALA 90 90 90 ALA ALA H . n
B 2 91 ASP 91 91 91 ASP ASP H . n
B 2 92 THR 92 92 92 THR THR H . n
B 2 93 ALA 93 93 93 ALA ALA H . n
B 2 94 VAL 94 94 94 VAL VAL H . n
B 2 95 TYR 95 95 95 TYR TYR H . n
B 2 96 TYR 96 96 96 TYR TYR H . n
B 2 97 CYS 97 97 97 CYS CYS H . n
B 2 98 ALA 98 98 98 ALA ALA H . n
B 2 99 ARG 99 99 99 ARG ARG H . n
B 2 100 CYS 100 100 100 CYS CYS H . n
B 2 101 ARG 101 101 101 ARG ARG H . n
B 2 102 PRO 102 102 102 PRO PRO H . n
B 2 103 GLU 103 103 103 GLU GLU H . n
B 2 104 TYR 104 104 104 TYR TYR H . n
B 2 105 TYR 105 105 105 TYR TYR H . n
B 2 106 PHE 106 106 106 PHE PHE H . n
B 2 107 GLY 107 107 107 GLY GLY H . n
B 2 108 SER 108 108 108 SER SER H . n
B 2 109 GLY 109 109 109 GLY GLY H . n
B 2 110 SER 110 110 110 SER SER H . n
B 2 111 TYR 111 111 111 TYR TYR H . n
B 2 112 LEU 112 112 112 LEU LEU H . n
B 2 113 ASP 113 113 113 ASP ASP H . n
B 2 114 PHE 114 114 114 PHE PHE H . n
B 2 115 ASP 115 115 115 ASP ASP H . n
B 2 116 TYR 116 116 116 TYR TYR H . n
B 2 117 TRP 117 117 117 TRP TRP H . n
B 2 118 GLY 118 118 118 GLY GLY H . n
B 2 119 GLN 119 119 119 GLN GLN H . n
B 2 120 GLY 120 120 120 GLY GLY H . n
B 2 121 THR 121 121 121 THR THR H . n
B 2 122 LEU 122 122 122 LEU LEU H . n
B 2 123 VAL 123 123 123 VAL VAL H . n
B 2 124 THR 124 124 124 THR THR H . n
B 2 125 VAL 125 125 125 VAL VAL H . n
B 2 126 SER 126 126 126 SER SER H . n
B 2 127 SER 127 127 ? ? ? H . n
C 3 1 ASP 1 1 1 ASP ASP L . n
C 3 2 ILE 2 2 2 ILE ILE L . n
C 3 3 GLN 3 3 3 GLN GLN L . n
C 3 4 MET 4 4 4 MET MET L . n
C 3 5 THR 5 5 5 THR THR L . n
C 3 6 GLN 6 6 6 GLN GLN L . n
C 3 7 SER 7 7 7 SER SER L . n
C 3 8 PRO 8 8 8 PRO PRO L . n
C 3 9 SER 9 9 9 SER SER L . n
C 3 10 SER 10 10 10 SER SER L . n
C 3 11 VAL 11 11 11 VAL VAL L . n
C 3 12 SER 12 12 12 SER SER L . n
C 3 13 ALA 13 13 13 ALA ALA L . n
C 3 14 SER 14 14 14 SER SER L . n
C 3 15 VAL 15 15 15 VAL VAL L . n
C 3 16 GLY 16 16 16 GLY GLY L . n
C 3 17 ASP 17 17 17 ASP ASP L . n
C 3 18 ARG 18 18 18 ARG ARG L . n
C 3 19 VAL 19 19 19 VAL VAL L . n
C 3 20 THR 20 20 20 THR THR L . n
C 3 21 ILE 21 21 21 ILE ILE L . n
C 3 22 THR 22 22 22 THR THR L . n
C 3 23 CYS 23 23 23 CYS CYS L . n
C 3 24 ARG 24 24 24 ARG ARG L . n
C 3 25 ALA 25 25 25 ALA ALA L . n
C 3 26 SER 26 26 26 SER SER L . n
C 3 27 GLN 27 27 27 GLN GLN L . n
C 3 28 GLY 28 28 28 GLY GLY L . n
C 3 29 ILE 29 29 29 ILE ILE L . n
C 3 30 SER 30 30 30 SER SER L . n
C 3 31 SER 31 31 31 SER SER L . n
C 3 32 TRP 32 32 32 TRP TRP L . n
C 3 33 LEU 33 33 33 LEU LEU L . n
C 3 34 ALA 34 34 34 ALA ALA L . n
C 3 35 TRP 35 35 35 TRP TRP L . n
C 3 36 TYR 36 36 36 TYR TYR L . n
C 3 37 GLN 37 37 37 GLN GLN L . n
C 3 38 GLN 38 38 38 GLN GLN L . n
C 3 39 LYS 39 39 39 LYS LYS L . n
C 3 40 PRO 40 40 40 PRO PRO L . n
C 3 41 GLY 41 41 41 GLY GLY L . n
C 3 42 LYS 42 42 42 LYS LYS L . n
C 3 43 ALA 43 43 43 ALA ALA L . n
C 3 44 PRO 44 44 44 PRO PRO L . n
C 3 45 LYS 45 45 45 LYS LYS L . n
C 3 46 LEU 46 46 46 LEU LEU L . n
C 3 47 LEU 47 47 47 LEU LEU L . n
C 3 48 ILE 48 48 48 ILE ILE L . n
C 3 49 TYR 49 49 49 TYR TYR L . n
C 3 50 ALA 50 50 50 ALA ALA L . n
C 3 51 ALA 51 51 51 ALA ALA L . n
C 3 52 SER 52 52 52 SER SER L . n
C 3 53 SER 53 53 53 SER SER L . n
C 3 54 LEU 54 54 54 LEU LEU L . n
C 3 55 GLN 55 55 55 GLN GLN L . n
C 3 56 SER 56 56 56 SER SER L . n
C 3 57 GLY 57 57 57 GLY GLY L . n
C 3 58 VAL 58 58 58 VAL VAL L . n
C 3 59 PRO 59 59 59 PRO PRO L . n
C 3 60 SER 60 60 60 SER SER L . n
C 3 61 ARG 61 61 61 ARG ARG L . n
C 3 62 PHE 62 62 62 PHE PHE L . n
C 3 63 SER 63 63 63 SER SER L . n
C 3 64 GLY 64 64 64 GLY GLY L . n
C 3 65 SER 65 65 65 SER SER L . n
C 3 66 GLY 66 66 66 GLY GLY L . n
C 3 67 SER 67 67 67 SER SER L . n
C 3 68 GLY 68 68 68 GLY GLY L . n
C 3 69 THR 69 69 69 THR THR L . n
C 3 70 ASP 70 70 70 ASP ASP L . n
C 3 71 PHE 71 71 71 PHE PHE L . n
C 3 72 THR 72 72 72 THR THR L . n
C 3 73 LEU 73 73 73 LEU LEU L . n
C 3 74 THR 74 74 74 THR THR L . n
C 3 75 ILE 75 75 75 ILE ILE L . n
C 3 76 SER 76 76 76 SER SER L . n
C 3 77 SER 77 77 77 SER SER L . n
C 3 78 LEU 78 78 78 LEU LEU L . n
C 3 79 GLN 79 79 79 GLN GLN L . n
C 3 80 PRO 80 80 80 PRO PRO L . n
C 3 81 GLU 81 81 81 GLU GLU L . n
C 3 82 ASP 82 82 82 ASP ASP L . n
C 3 83 PHE 83 83 83 PHE PHE L . n
C 3 84 ALA 84 84 84 ALA ALA L . n
C 3 85 THR 85 85 85 THR THR L . n
C 3 86 TYR 86 86 86 TYR TYR L . n
C 3 87 TYR 87 87 87 TYR TYR L . n
C 3 88 CYS 88 88 88 CYS CYS L . n
C 3 89 GLN 89 89 89 GLN GLN L . n
C 3 90 GLN 90 90 90 GLN GLN L . n
C 3 91 ALA 91 91 91 ALA ALA L . n
C 3 92 ASN 92 92 92 ASN ASN L . n
C 3 93 SER 93 93 93 SER SER L . n
C 3 94 PHE 94 94 94 PHE PHE L . n
C 3 95 PRO 95 95 95 PRO PRO L . n
C 3 96 LEU 96 96 96 LEU LEU L . n
C 3 97 THR 97 97 97 THR THR L . n
C 3 98 PHE 98 98 98 PHE PHE L . n
C 3 99 GLY 99 99 99 GLY GLY L . n
C 3 100 GLY 100 100 100 GLY GLY L . n
C 3 101 GLY 101 101 101 GLY GLY L . n
C 3 102 THR 102 102 102 THR THR L . n
C 3 103 LYS 103 103 103 LYS LYS L . n
C 3 104 VAL 104 104 104 VAL VAL L . n
C 3 105 GLU 105 105 105 GLU GLU L . n
C 3 106 ILE 106 106 106 ILE ILE L . n
C 3 107 LYS 107 107 107 LYS LYS L . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
D 4 NAG 1 A NAG 1 B NAG 293 n
D 4 NAG 2 A NAG 2 B NAG 294 n
E 4 NAG 1 C NAG 1 B NAG 314 n
E 4 NAG 2 C NAG 2 B NAG 315 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 NAG 1 401 301 NAG NAG B .
G 5 NAG 1 402 312 NAG NAG B .
H 5 NAG 1 403 313 NAG NAG B .
#
_software.citation_id ?
_software.classification refinement
_software.compiler_name ?
_software.compiler_version ?
_software.contact_author ?
_software.contact_author_email ?
_software.date ?
_software.description ?
_software.dependencies ?
_software.hardware ?
_software.language ?
_software.location ?
_software.mods ?
_software.name PHENIX
_software.os ?
_software.os_version ?
_software.type ?
_software.version 1.19.2_4158:
_software.pdbx_ordinal 1
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 7RBU
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 1.00
_cell.length_a_esd ?
_cell.length_b 1.00
_cell.length_b_esd ?
_cell.length_c 1.00
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB ?
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7RBU
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7RBU
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON MICROSCOPY'
_exptl.method_details ?
#
_refine.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine.entry_id 7RBU
_refine.pdbx_diffrn_id ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high .
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON MICROSCOPY' ? 0.005 ? 4218 ? f_bond_d ? ?
'ELECTRON MICROSCOPY' ? 0.676 ? 5741 ? f_angle_d ? ?
'ELECTRON MICROSCOPY' ? 5.592 ? 598 ? f_dihedral_angle_d ? ?
'ELECTRON MICROSCOPY' ? 0.046 ? 647 ? f_chiral_restr ? ?
'ELECTRON MICROSCOPY' ? 0.005 ? 721 ? f_plane_restr ? ?
#
_struct.entry_id 7RBU
_struct.title 'SARS-CoV-2 Spike in complex with PVI.V6-14 Fab'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7RBU
_struct_keywords.text 'virus, neutralizing antibody, vaccine, plasmablast, VIRAL PROTEIN-IMMUNE SYSTEM complex'
_struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
F N N 5 ?
G N N 5 ?
H N N 5 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP SPIKE_SARS2 P0DTC2 ? 1
;QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA
STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ
PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD
SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT
;
14
2 PDB 7RBU 7RBU ? 2 ? 1
3 UNP A0A5C2FYK4_HUMAN A0A5C2FYK4 ? 3
;DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP
EDFATYYCQQANSFPLTFGGGTKVEIK
;
1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 7RBU B 1 ? 294 ? P0DTC2 14 ? 307 ? 14 307
2 2 7RBU H 1 ? 127 ? 7RBU 1 ? 127 ? 1 127
3 3 7RBU L 1 ? 107 ? A0A5C2FYK4 1 ? 107 ? 1 107
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy'
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation ?
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 123 SG ? ? B CYS 15 B CYS 136 1_555 ? ? ? ? ? ? ? 2.030 ? ?
disulf2 disulf ? ? A CYS 118 SG ? ? ? 1_555 A CYS 153 SG ? ? B CYS 131 B CYS 166 1_555 ? ? ? ? ? ? ? 2.056 ? ?
disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 97 SG ? ? H CYS 22 H CYS 97 1_555 ? ? ? ? ? ? ? 2.035 ? ?
disulf4 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.042 ? ?
covale1 covale one ? A ASN 4 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 17 C NAG 1 1_555 ? ? ? ? ? ? ? 1.434 ? N-Glycosylation
covale2 covale one ? A ASN 48 ND2 ? ? ? 1_555 G NAG . C1 ? ? B ASN 61 B NAG 402 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation
covale3 covale one ? A ASN 109 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 122 A NAG 1 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation
covale4 covale one ? A ASN 136 ND2 ? ? ? 1_555 H NAG . C1 ? ? B ASN 149 B NAG 403 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation
covale5 covale one ? A ASN 221 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 234 B NAG 401 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation
covale6 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ?
covale7 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG D . ? ASN A 109 ? NAG A 1 ? 1_555 ASN B 122 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG E . ? ASN A 4 ? NAG C 1 ? 1_555 ASN B 17 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 NAG F . ? ASN A 221 ? NAG B 401 ? 1_555 ASN B 234 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
4 NAG G . ? ASN A 48 ? NAG B 402 ? 1_555 ASN B 61 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
5 NAG H . ? ASN A 136 ? NAG B 403 ? 1_555 ASN B 149 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
6 CYS A 2 ? CYS A 123 ? CYS B 15 ? 1_555 CYS B 136 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS A 118 ? CYS A 153 ? CYS B 131 ? 1_555 CYS B 166 ? 1_555 SG SG . . . None 'Disulfide bridge'
8 CYS B 22 ? CYS B 97 ? CYS H 22 ? 1_555 CYS H 97 ? 1_555 SG SG . . . None 'Disulfide bridge'
9 CYS C 23 ? CYS C 88 ? CYS L 23 ? 1_555 CYS L 88 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 8 ?
AA2 ? 3 ?
AA3 ? 3 ?
AA4 ? 4 ?
AA5 ? 6 ?
AA6 ? 6 ?
AA7 ? 4 ?
AA8 ? 4 ?
AA9 ? 4 ?
AB1 ? 5 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA1 4 5 ? anti-parallel
AA1 5 6 ? anti-parallel
AA1 6 7 ? anti-parallel
AA1 7 8 ? parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? anti-parallel
AA3 1 2 ? anti-parallel
AA3 2 3 ? anti-parallel
AA4 1 2 ? anti-parallel
AA4 2 3 ? parallel
AA4 3 4 ? anti-parallel
AA5 1 2 ? anti-parallel
AA5 2 3 ? anti-parallel
AA5 3 4 ? anti-parallel
AA5 4 5 ? anti-parallel
AA5 5 6 ? anti-parallel
AA6 1 2 ? anti-parallel
AA6 2 3 ? anti-parallel
AA6 3 4 ? anti-parallel
AA6 4 5 ? anti-parallel
AA6 5 6 ? anti-parallel
AA7 1 2 ? anti-parallel
AA7 2 3 ? anti-parallel
AA7 3 4 ? anti-parallel
AA8 1 2 ? anti-parallel
AA8 2 3 ? anti-parallel
AA8 3 4 ? anti-parallel
AA9 1 2 ? anti-parallel
AA9 2 3 ? anti-parallel
AA9 3 4 ? anti-parallel
AB1 1 2 ? parallel
AB1 2 3 ? anti-parallel
AB1 3 4 ? anti-parallel
AB1 4 5 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 ALA A 14 ? SER A 18 ? ALA B 27 SER B 31
AA1 2 SER A 47 ? VAL A 57 ? SER B 60 VAL B 70
AA1 3 ALA A 249 ? TYR A 256 ? ALA B 262 TYR B 269
AA1 4 GLY A 76 ? GLU A 83 ? GLY B 89 GLU B 96
AA1 5 LEU A 176 ? ILE A 184 ? LEU B 189 ILE B 197
AA1 6 TYR A 187 ? THR A 195 ? TYR B 200 THR B 208
AA1 7 ALA A 209 ? PRO A 217 ? ALA B 222 PRO B 230
AA1 8 VAL A 23 ? TYR A 24 ? VAL B 36 TYR B 37
AA2 1 ALA A 14 ? SER A 18 ? ALA B 27 SER B 31
AA2 2 SER A 47 ? VAL A 57 ? SER B 60 VAL B 70
AA2 3 THR A 63 ? LYS A 64 ? THR B 76 LYS B 77
AA3 1 LEU A 35 ? PHE A 42 ? LEU B 48 PHE B 55
AA3 2 GLN A 258 ? TYR A 266 ? GLN B 271 TYR B 279
AA3 3 ILE A 272 ? ASP A 277 ? ILE B 285 ASP B 290
AA4 1 LEU A 71 ? PRO A 72 ? LEU B 84 PRO B 85
AA4 2 ARG A 224 ? LEU A 231 ? ARG B 237 LEU B 244
AA4 3 PHE A 122 ? GLY A 129 ? PHE B 135 GLY B 142
AA4 4 ARG A 145 ? TYR A 147 ? ARG B 158 TYR B 160
AA5 1 LEU A 71 ? PRO A 72 ? LEU B 84 PRO B 85
AA5 2 ARG A 224 ? LEU A 231 ? ARG B 237 LEU B 244
AA5 3 ILE A 88 ? GLY A 94 ? ILE B 101 GLY B 107
AA5 4 SER A 103 ? ASN A 108 ? SER B 116 ASN B 121
AA5 5 VAL A 113 ? GLU A 119 ? VAL B 126 GLU B 132
AA5 6 ASN A 151 ? VAL A 158 ? ASN B 164 VAL B 171
AA6 1 PHE A 162 ? LEU A 163 ? PHE B 175 LEU B 176
AA6 2 SER B 110 ? ASP B 115 ? SER H 110 ASP H 115
AA6 3 ALA B 93 ? PRO B 102 ? ALA H 93 PRO H 102
AA6 4 TRP B 36 ? GLN B 41 ? TRP H 36 GLN H 41
AA6 5 GLU B 48 ? ILE B 53 ? GLU H 48 ILE H 53
AA6 6 TYR B 60 ? TYR B 61 ? TYR H 60 TYR H 61
AA7 1 PHE A 162 ? LEU A 163 ? PHE B 175 LEU B 176
AA7 2 SER B 110 ? ASP B 115 ? SER H 110 ASP H 115
AA7 3 ALA B 93 ? PRO B 102 ? ALA H 93 PRO H 102
AA7 4 THR B 121 ? VAL B 123 ? THR H 121 VAL H 123
AA8 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7
AA8 2 THR B 21 ? SER B 25 ? THR H 21 SER H 25
AA8 3 GLN B 79 ? LEU B 84 ? GLN H 79 LEU H 84
AA8 4 VAL B 69 ? ASP B 74 ? VAL H 69 ASP H 74
AA9 1 THR C 5 ? GLN C 6 ? THR L 5 GLN L 6
AA9 2 VAL C 19 ? ARG C 24 ? VAL L 19 ARG L 24
AA9 3 THR C 72 ? ILE C 75 ? THR L 72 ILE L 75
AA9 4 PHE C 62 ? SER C 63 ? PHE L 62 SER L 63
AB1 1 VAL C 11 ? ALA C 13 ? VAL L 11 ALA L 13
AB1 2 THR C 102 ? ILE C 106 ? THR L 102 ILE L 106
AB1 3 ALA C 84 ? GLN C 90 ? ALA L 84 GLN L 90
AB1 4 LEU C 33 ? GLN C 38 ? LEU L 33 GLN L 38
AB1 5 LYS C 45 ? TYR C 49 ? LYS L 45 TYR L 49
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N THR A 16 ? N THR B 29 O VAL A 49 ? O VAL B 62
AA1 2 3 N THR A 50 ? N THR B 63 O VAL A 254 ? O VAL B 267
AA1 3 4 O GLY A 255 ? O GLY B 268 N TYR A 78 ? N TYR B 91
AA1 4 5 N VAL A 77 ? N VAL B 90 O PHE A 181 ? O PHE B 194
AA1 5 6 N LYS A 182 ? N LYS B 195 O LYS A 189 ? O LYS B 202
AA1 6 7 N ILE A 190 ? N ILE B 203 O VAL A 214 ? O VAL B 227
AA1 7 8 O LEU A 210 ? O LEU B 223 N VAL A 23 ? N VAL B 36
AA2 1 2 N THR A 16 ? N THR B 29 O VAL A 49 ? O VAL B 62
AA2 2 3 N VAL A 57 ? N VAL B 70 O THR A 63 ? O THR B 76
AA3 1 2 N ASP A 40 ? N ASP B 53 O ARG A 260 ? O ARG B 273
AA3 2 3 N LEU A 263 ? N LEU B 276 O VAL A 276 ? O VAL B 289
AA4 1 2 N LEU A 71 ? N LEU B 84 O PHE A 225 ? O PHE B 238
AA4 2 3 O LEU A 231 ? O LEU B 244 N LEU A 128 ? N LEU B 141
AA4 3 4 N PHE A 127 ? N PHE B 140 O ARG A 145 ? O ARG B 158
AA5 1 2 N LEU A 71 ? N LEU B 84 O PHE A 225 ? O PHE B 238
AA5 2 3 O ARG A 224 ? O ARG B 237 N GLY A 94 ? N GLY B 107
AA5 3 4 N PHE A 93 ? N PHE B 106 O LEU A 104 ? O LEU B 117
AA5 4 5 N VAL A 107 ? N VAL B 120 O VAL A 114 ? O VAL B 127
AA5 5 6 N ILE A 115 ? N ILE B 128 O TYR A 157 ? O TYR B 170
AA6 1 2 N LEU A 163 ? N LEU B 176 O SER B 110 ? O SER H 110
AA6 2 3 O TYR B 111 ? O TYR H 111 N ARG B 101 ? N ARG H 101
AA6 3 4 O TYR B 96 ? O TYR H 96 N ILE B 39 ? N ILE H 39
AA6 4 5 N TRP B 36 ? N TRP H 36 O ILE B 53 ? O ILE H 53
AA6 5 6 N SER B 52 ? N SER H 52 O TYR B 60 ? O TYR H 60
AA7 1 2 N LEU A 163 ? N LEU B 176 O SER B 110 ? O SER H 110
AA7 2 3 O TYR B 111 ? O TYR H 111 N ARG B 101 ? N ARG H 101
AA7 3 4 N ALA B 93 ? N ALA H 93 O VAL B 123 ? O VAL H 123
AA8 1 2 N GLN B 3 ? N GLN H 3 O SER B 25 ? O SER H 25
AA8 2 3 N CYS B 22 ? N CYS H 22 O PHE B 80 ? O PHE H 80
AA8 3 4 O LYS B 83 ? O LYS H 83 N THR B 70 ? N THR H 70
AA9 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24
AA9 2 3 N ILE C 21 ? N ILE L 21 O LEU C 73 ? O LEU L 73
AA9 3 4 O THR C 74 ? O THR L 74 N SER C 63 ? N SER L 63
AB1 1 2 N VAL C 11 ? N VAL L 11 O GLU C 105 ? O GLU L 105
AB1 2 3 O THR C 102 ? O THR L 102 N TYR C 86 ? N TYR L 86
AB1 3 4 O GLN C 89 ? O GLN L 89 N ALA C 34 ? N ALA L 34
AB1 4 5 N GLN C 37 ? N GLN L 37 O LYS C 45 ? O LYS L 45
#
_pdbx_entry_details.entry_id 7RBU
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 OG
_pdbx_validate_close_contact.auth_asym_id_1 L
_pdbx_validate_close_contact.auth_comp_id_1 SER
_pdbx_validate_close_contact.auth_seq_id_1 52
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 L
_pdbx_validate_close_contact.auth_comp_id_2 GLY
_pdbx_validate_close_contact.auth_seq_id_2 64
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.17
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 THR B 20 ? ? -144.49 30.93
2 1 LEU B 24 ? ? -172.20 149.15
3 1 ASP B 40 ? ? -162.12 -165.85
4 1 ASN B 74 ? ? 53.06 -141.09
5 1 ASN B 81 ? ? -151.83 71.69
6 1 ASN B 87 ? ? 59.22 -123.14
7 1 GLU B 156 ? ? -173.28 136.07
8 1 SER B 162 ? ? -163.28 115.26
9 1 THR B 167 ? ? -99.82 -66.14
10 1 LYS B 187 ? ? -140.51 23.23
11 1 ASP B 198 ? ? 55.99 -131.39
12 1 ASN B 211 ? ? -140.53 43.52
13 1 ASP B 215 ? ? 94.60 176.31
14 1 ILE B 231 ? ? -125.52 -59.20
15 1 ARG B 246 ? ? -163.53 118.28
16 1 SER B 255 ? ? 72.37 -4.27
17 1 SER H 56 ? ? 61.64 61.36
18 1 LEU H 112 ? ? -97.63 57.18
19 1 ASP L 17 ? ? -160.32 -165.89
20 1 ALA L 50 ? ? 55.82 -158.28
21 1 SER L 53 ? ? -166.26 -167.73
22 1 SER L 56 ? ? 55.25 -143.26
23 1 SER L 67 ? ? -166.16 -167.08
24 1 PRO L 80 ? ? -57.65 -8.39
#
_em_3d_fitting.entry_id 7RBU
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol ?
_em_3d_fitting.ref_space ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.method ?
#
_em_3d_reconstruction.entry_id 7RBU
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles 60639
_em_3d_reconstruction.resolution 3.7
_em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF'
_em_3d_reconstruction.symmetry_type POINT
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 7.5
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'SARS-CoV-2 Spike:PVI.V6-14 Fab complex'
_em_entity_assembly.source 'MULTIPLE SOURCES'
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list '1, 2, 3'
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 7RBU
_em_imaging.accelerating_voltage 300
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TITAN KRIOS'
_em_imaging.mode 'BRIGHT FIELD'
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max 2500
_em_imaging.nominal_defocus_min 800
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.entry_id 7RBU
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 7RBU
_em_experiment.id 1
_em_experiment.aggregation_state PARTICLE
_em_experiment.reconstruction_method 'SINGLE PARTICLE'
_em_experiment.entity_assembly_id 1
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 B ALA 292 ? A ALA 279
2 1 Y 1 B LEU 293 ? A LEU 280
3 1 Y 1 B ASP 294 ? A ASP 281
4 1 Y 1 B PRO 295 ? A PRO 282
5 1 Y 1 B LEU 296 ? A LEU 283
6 1 Y 1 B SER 297 ? A SER 284
7 1 Y 1 B GLU 298 ? A GLU 285
8 1 Y 1 B THR 299 ? A THR 286
9 1 Y 1 B LYS 300 ? A LYS 287
10 1 Y 1 B CYS 301 ? A CYS 288
11 1 Y 1 B THR 302 ? A THR 289
12 1 Y 1 B LEU 303 ? A LEU 290
13 1 Y 1 B LYS 304 ? A LYS 291
14 1 Y 1 B SER 305 ? A SER 292
15 1 Y 1 B PHE 306 ? A PHE 293
16 1 Y 1 B THR 307 ? A THR 294
17 1 Y 1 H GLN 1 ? B GLN 1
18 1 Y 1 H SER 127 ? B SER 127
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
ILE N N N N 158
ILE CA C N S 159
ILE C C N N 160
ILE O O N N 161
ILE CB C N S 162
ILE CG1 C N N 163
ILE CG2 C N N 164
ILE CD1 C N N 165
ILE OXT O N N 166
ILE H H N N 167
ILE H2 H N N 168
ILE HA H N N 169
ILE HB H N N 170
ILE HG12 H N N 171
ILE HG13 H N N 172
ILE HG21 H N N 173
ILE HG22 H N N 174
ILE HG23 H N N 175
ILE HD11 H N N 176
ILE HD12 H N N 177
ILE HD13 H N N 178
ILE HXT H N N 179
LEU N N N N 180
LEU CA C N S 181
LEU C C N N 182
LEU O O N N 183
LEU CB C N N 184
LEU CG C N N 185
LEU CD1 C N N 186
LEU CD2 C N N 187
LEU OXT O N N 188
LEU H H N N 189
LEU H2 H N N 190
LEU HA H N N 191
LEU HB2 H N N 192
LEU HB3 H N N 193
LEU HG H N N 194
LEU HD11 H N N 195
LEU HD12 H N N 196
LEU HD13 H N N 197
LEU HD21 H N N 198
LEU HD22 H N N 199
LEU HD23 H N N 200
LEU HXT H N N 201
LYS N N N N 202
LYS CA C N S 203
LYS C C N N 204
LYS O O N N 205
LYS CB C N N 206
LYS CG C N N 207
LYS CD C N N 208
LYS CE C N N 209
LYS NZ N N N 210
LYS OXT O N N 211
LYS H H N N 212
LYS H2 H N N 213
LYS HA H N N 214
LYS HB2 H N N 215
LYS HB3 H N N 216
LYS HG2 H N N 217
LYS HG3 H N N 218
LYS HD2 H N N 219
LYS HD3 H N N 220
LYS HE2 H N N 221
LYS HE3 H N N 222
LYS HZ1 H N N 223
LYS HZ2 H N N 224
LYS HZ3 H N N 225
LYS HXT H N N 226
MET N N N N 227
MET CA C N S 228
MET C C N N 229
MET O O N N 230
MET CB C N N 231
MET CG C N N 232
MET SD S N N 233
MET CE C N N 234
MET OXT O N N 235
MET H H N N 236
MET H2 H N N 237
MET HA H N N 238
MET HB2 H N N 239
MET HB3 H N N 240
MET HG2 H N N 241
MET HG3 H N N 242
MET HE1 H N N 243
MET HE2 H N N 244
MET HE3 H N N 245
MET HXT H N N 246
NAG C1 C N R 247
NAG C2 C N R 248
NAG C3 C N R 249
NAG C4 C N S 250
NAG C5 C N R 251
NAG C6 C N N 252
NAG C7 C N N 253
NAG C8 C N N 254
NAG N2 N N N 255
NAG O1 O N N 256
NAG O3 O N N 257
NAG O4 O N N 258
NAG O5 O N N 259
NAG O6 O N N 260
NAG O7 O N N 261
NAG H1 H N N 262
NAG H2 H N N 263
NAG H3 H N N 264
NAG H4 H N N 265
NAG H5 H N N 266
NAG H61 H N N 267
NAG H62 H N N 268
NAG H81 H N N 269
NAG H82 H N N 270
NAG H83 H N N 271
NAG HN2 H N N 272
NAG HO1 H N N 273
NAG HO3 H N N 274
NAG HO4 H N N 275
NAG HO6 H N N 276
PHE N N N N 277
PHE CA C N S 278
PHE C C N N 279
PHE O O N N 280
PHE CB C N N 281
PHE CG C Y N 282
PHE CD1 C Y N 283
PHE CD2 C Y N 284
PHE CE1 C Y N 285
PHE CE2 C Y N 286
PHE CZ C Y N 287
PHE OXT O N N 288
PHE H H N N 289
PHE H2 H N N 290
PHE HA H N N 291
PHE HB2 H N N 292
PHE HB3 H N N 293
PHE HD1 H N N 294
PHE HD2 H N N 295
PHE HE1 H N N 296
PHE HE2 H N N 297
PHE HZ H N N 298
PHE HXT H N N 299
PRO N N N N 300
PRO CA C N S 301
PRO C C N N 302
PRO O O N N 303
PRO CB C N N 304
PRO CG C N N 305
PRO CD C N N 306
PRO OXT O N N 307
PRO H H N N 308
PRO HA H N N 309
PRO HB2 H N N 310
PRO HB3 H N N 311
PRO HG2 H N N 312
PRO HG3 H N N 313
PRO HD2 H N N 314
PRO HD3 H N N 315
PRO HXT H N N 316
SER N N N N 317
SER CA C N S 318
SER C C N N 319
SER O O N N 320
SER CB C N N 321
SER OG O N N 322
SER OXT O N N 323
SER H H N N 324
SER H2 H N N 325
SER HA H N N 326
SER HB2 H N N 327
SER HB3 H N N 328
SER HG H N N 329
SER HXT H N N 330
THR N N N N 331
THR CA C N S 332
THR C C N N 333
THR O O N N 334
THR CB C N R 335
THR OG1 O N N 336
THR CG2 C N N 337
THR OXT O N N 338
THR H H N N 339
THR H2 H N N 340
THR HA H N N 341
THR HB H N N 342
THR HG1 H N N 343
THR HG21 H N N 344
THR HG22 H N N 345
THR HG23 H N N 346
THR HXT H N N 347
TRP N N N N 348
TRP CA C N S 349
TRP C C N N 350
TRP O O N N 351
TRP CB C N N 352
TRP CG C Y N 353
TRP CD1 C Y N 354
TRP CD2 C Y N 355
TRP NE1 N Y N 356
TRP CE2 C Y N 357
TRP CE3 C Y N 358
TRP CZ2 C Y N 359
TRP CZ3 C Y N 360
TRP CH2 C Y N 361
TRP OXT O N N 362
TRP H H N N 363
TRP H2 H N N 364
TRP HA H N N 365
TRP HB2 H N N 366
TRP HB3 H N N 367
TRP HD1 H N N 368
TRP HE1 H N N 369
TRP HE3 H N N 370
TRP HZ2 H N N 371
TRP HZ3 H N N 372
TRP HH2 H N N 373
TRP HXT H N N 374
TYR N N N N 375
TYR CA C N S 376
TYR C C N N 377
TYR O O N N 378
TYR CB C N N 379
TYR CG C Y N 380
TYR CD1 C Y N 381
TYR CD2 C Y N 382
TYR CE1 C Y N 383
TYR CE2 C Y N 384
TYR CZ C Y N 385
TYR OH O N N 386
TYR OXT O N N 387
TYR H H N N 388
TYR H2 H N N 389
TYR HA H N N 390
TYR HB2 H N N 391
TYR HB3 H N N 392
TYR HD1 H N N 393
TYR HD2 H N N 394
TYR HE1 H N N 395
TYR HE2 H N N 396
TYR HH H N N 397
TYR HXT H N N 398
VAL N N N N 399
VAL CA C N S 400
VAL C C N N 401
VAL O O N N 402
VAL CB C N N 403
VAL CG1 C N N 404
VAL CG2 C N N 405
VAL OXT O N N 406
VAL H H N N 407
VAL H2 H N N 408
VAL HA H N N 409
VAL HB H N N 410
VAL HG11 H N N 411
VAL HG12 H N N 412
VAL HG13 H N N 413
VAL HG21 H N N 414
VAL HG22 H N N 415
VAL HG23 H N N 416
VAL HXT H N N 417
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
ILE N CA sing N N 150
ILE N H sing N N 151
ILE N H2 sing N N 152
ILE CA C sing N N 153
ILE CA CB sing N N 154
ILE CA HA sing N N 155
ILE C O doub N N 156
ILE C OXT sing N N 157
ILE CB CG1 sing N N 158
ILE CB CG2 sing N N 159
ILE CB HB sing N N 160
ILE CG1 CD1 sing N N 161
ILE CG1 HG12 sing N N 162
ILE CG1 HG13 sing N N 163
ILE CG2 HG21 sing N N 164
ILE CG2 HG22 sing N N 165
ILE CG2 HG23 sing N N 166
ILE CD1 HD11 sing N N 167
ILE CD1 HD12 sing N N 168
ILE CD1 HD13 sing N N 169
ILE OXT HXT sing N N 170
LEU N CA sing N N 171
LEU N H sing N N 172
LEU N H2 sing N N 173
LEU CA C sing N N 174
LEU CA CB sing N N 175
LEU CA HA sing N N 176
LEU C O doub N N 177
LEU C OXT sing N N 178
LEU CB CG sing N N 179
LEU CB HB2 sing N N 180
LEU CB HB3 sing N N 181
LEU CG CD1 sing N N 182
LEU CG CD2 sing N N 183
LEU CG HG sing N N 184
LEU CD1 HD11 sing N N 185
LEU CD1 HD12 sing N N 186
LEU CD1 HD13 sing N N 187
LEU CD2 HD21 sing N N 188
LEU CD2 HD22 sing N N 189
LEU CD2 HD23 sing N N 190
LEU OXT HXT sing N N 191
LYS N CA sing N N 192
LYS N H sing N N 193
LYS N H2 sing N N 194
LYS CA C sing N N 195
LYS CA CB sing N N 196
LYS CA HA sing N N 197
LYS C O doub N N 198
LYS C OXT sing N N 199
LYS CB CG sing N N 200
LYS CB HB2 sing N N 201
LYS CB HB3 sing N N 202
LYS CG CD sing N N 203
LYS CG HG2 sing N N 204
LYS CG HG3 sing N N 205
LYS CD CE sing N N 206
LYS CD HD2 sing N N 207
LYS CD HD3 sing N N 208
LYS CE NZ sing N N 209
LYS CE HE2 sing N N 210
LYS CE HE3 sing N N 211
LYS NZ HZ1 sing N N 212
LYS NZ HZ2 sing N N 213
LYS NZ HZ3 sing N N 214
LYS OXT HXT sing N N 215
MET N CA sing N N 216
MET N H sing N N 217
MET N H2 sing N N 218
MET CA C sing N N 219
MET CA CB sing N N 220
MET CA HA sing N N 221
MET C O doub N N 222
MET C OXT sing N N 223
MET CB CG sing N N 224
MET CB HB2 sing N N 225
MET CB HB3 sing N N 226
MET CG SD sing N N 227
MET CG HG2 sing N N 228
MET CG HG3 sing N N 229
MET SD CE sing N N 230
MET CE HE1 sing N N 231
MET CE HE2 sing N N 232
MET CE HE3 sing N N 233
MET OXT HXT sing N N 234
NAG C1 C2 sing N N 235
NAG C1 O1 sing N N 236
NAG C1 O5 sing N N 237
NAG C1 H1 sing N N 238
NAG C2 C3 sing N N 239
NAG C2 N2 sing N N 240
NAG C2 H2 sing N N 241
NAG C3 C4 sing N N 242
NAG C3 O3 sing N N 243
NAG C3 H3 sing N N 244
NAG C4 C5 sing N N 245
NAG C4 O4 sing N N 246
NAG C4 H4 sing N N 247
NAG C5 C6 sing N N 248
NAG C5 O5 sing N N 249
NAG C5 H5 sing N N 250
NAG C6 O6 sing N N 251
NAG C6 H61 sing N N 252
NAG C6 H62 sing N N 253
NAG C7 C8 sing N N 254
NAG C7 N2 sing N N 255
NAG C7 O7 doub N N 256
NAG C8 H81 sing N N 257
NAG C8 H82 sing N N 258
NAG C8 H83 sing N N 259
NAG N2 HN2 sing N N 260
NAG O1 HO1 sing N N 261
NAG O3 HO3 sing N N 262
NAG O4 HO4 sing N N 263
NAG O6 HO6 sing N N 264
PHE N CA sing N N 265
PHE N H sing N N 266
PHE N H2 sing N N 267
PHE CA C sing N N 268
PHE CA CB sing N N 269
PHE CA HA sing N N 270
PHE C O doub N N 271
PHE C OXT sing N N 272
PHE CB CG sing N N 273
PHE CB HB2 sing N N 274
PHE CB HB3 sing N N 275
PHE CG CD1 doub Y N 276
PHE CG CD2 sing Y N 277
PHE CD1 CE1 sing Y N 278
PHE CD1 HD1 sing N N 279
PHE CD2 CE2 doub Y N 280
PHE CD2 HD2 sing N N 281
PHE CE1 CZ doub Y N 282
PHE CE1 HE1 sing N N 283
PHE CE2 CZ sing Y N 284
PHE CE2 HE2 sing N N 285
PHE CZ HZ sing N N 286
PHE OXT HXT sing N N 287
PRO N CA sing N N 288
PRO N CD sing N N 289
PRO N H sing N N 290
PRO CA C sing N N 291
PRO CA CB sing N N 292
PRO CA HA sing N N 293
PRO C O doub N N 294
PRO C OXT sing N N 295
PRO CB CG sing N N 296
PRO CB HB2 sing N N 297
PRO CB HB3 sing N N 298
PRO CG CD sing N N 299
PRO CG HG2 sing N N 300
PRO CG HG3 sing N N 301
PRO CD HD2 sing N N 302
PRO CD HD3 sing N N 303
PRO OXT HXT sing N N 304
SER N CA sing N N 305
SER N H sing N N 306
SER N H2 sing N N 307
SER CA C sing N N 308
SER CA CB sing N N 309
SER CA HA sing N N 310
SER C O doub N N 311
SER C OXT sing N N 312
SER CB OG sing N N 313
SER CB HB2 sing N N 314
SER CB HB3 sing N N 315
SER OG HG sing N N 316
SER OXT HXT sing N N 317
THR N CA sing N N 318
THR N H sing N N 319
THR N H2 sing N N 320
THR CA C sing N N 321
THR CA CB sing N N 322
THR CA HA sing N N 323
THR C O doub N N 324
THR C OXT sing N N 325
THR CB OG1 sing N N 326
THR CB CG2 sing N N 327
THR CB HB sing N N 328
THR OG1 HG1 sing N N 329
THR CG2 HG21 sing N N 330
THR CG2 HG22 sing N N 331
THR CG2 HG23 sing N N 332
THR OXT HXT sing N N 333
TRP N CA sing N N 334
TRP N H sing N N 335
TRP N H2 sing N N 336
TRP CA C sing N N 337
TRP CA CB sing N N 338
TRP CA HA sing N N 339
TRP C O doub N N 340
TRP C OXT sing N N 341
TRP CB CG sing N N 342
TRP CB HB2 sing N N 343
TRP CB HB3 sing N N 344
TRP CG CD1 doub Y N 345
TRP CG CD2 sing Y N 346
TRP CD1 NE1 sing Y N 347
TRP CD1 HD1 sing N N 348
TRP CD2 CE2 doub Y N 349
TRP CD2 CE3 sing Y N 350
TRP NE1 CE2 sing Y N 351
TRP NE1 HE1 sing N N 352
TRP CE2 CZ2 sing Y N 353
TRP CE3 CZ3 doub Y N 354
TRP CE3 HE3 sing N N 355
TRP CZ2 CH2 doub Y N 356
TRP CZ2 HZ2 sing N N 357
TRP CZ3 CH2 sing Y N 358
TRP CZ3 HZ3 sing N N 359
TRP CH2 HH2 sing N N 360
TRP OXT HXT sing N N 361
TYR N CA sing N N 362
TYR N H sing N N 363
TYR N H2 sing N N 364
TYR CA C sing N N 365
TYR CA CB sing N N 366
TYR CA HA sing N N 367
TYR C O doub N N 368
TYR C OXT sing N N 369
TYR CB CG sing N N 370
TYR CB HB2 sing N N 371
TYR CB HB3 sing N N 372
TYR CG CD1 doub Y N 373
TYR CG CD2 sing Y N 374
TYR CD1 CE1 sing Y N 375
TYR CD1 HD1 sing N N 376
TYR CD2 CE2 doub Y N 377
TYR CD2 HD2 sing N N 378
TYR CE1 CZ doub Y N 379
TYR CE1 HE1 sing N N 380
TYR CE2 CZ sing Y N 381
TYR CE2 HE2 sing N N 382
TYR CZ OH sing N N 383
TYR OH HH sing N N 384
TYR OXT HXT sing N N 385
VAL N CA sing N N 386
VAL N H sing N N 387
VAL N H2 sing N N 388
VAL CA C sing N N 389
VAL CA CB sing N N 390
VAL CA HA sing N N 391
VAL C O doub N N 392
VAL C OXT sing N N 393
VAL CB CG1 sing N N 394
VAL CB CG2 sing N N 395
VAL CB HB sing N N 396
VAL CG1 HG11 sing N N 397
VAL CG1 HG12 sing N N 398
VAL CG1 HG13 sing N N 399
VAL CG2 HG21 sing N N 400
VAL CG2 HG22 sing N N 401
VAL CG2 HG23 sing N N 402
VAL OXT HXT sing N N 403
#
_em_admin.entry_id 7RBU
_em_admin.current_status REL
_em_admin.deposition_date 2021-07-06
_em_admin.deposition_site RCSB
_em_admin.last_update 2024-10-09
_em_admin.map_release_date 2022-05-04
_em_admin.title 'SARS-CoV-2 Spike in complex with PVI.V6-14 Fab'
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.experimental_flag NO
_em_entity_assembly_molwt.units KILODALTONS/NANOMETER
_em_entity_assembly_molwt.value 550
#
_em_entity_assembly_naturalsource.id 1
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.ncbi_tax_id 2697049
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_entity_assembly_recombinant.id 1
_em_entity_assembly_recombinant.entity_assembly_id 1
_em_entity_assembly_recombinant.cell Expi293
_em_entity_assembly_recombinant.ncbi_tax_id 9606
_em_entity_assembly_recombinant.organism 'Homo sapiens'
_em_entity_assembly_recombinant.plasmid ?
_em_entity_assembly_recombinant.strain ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 50
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
_em_image_recording.avg_electron_dose_per_subtomogram ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'PARTICLE SELECTION' ? ? ? 1 ? ?
2 'IMAGE ACQUISITION' ? ? ? ? ? 1
3 MASKING ? ? ? ? ? ?
4 'CTF CORRECTION' ? ? ? 1 ? ?
5 'LAYERLINE INDEXING' ? ? ? ? ? ?
6 'DIFFRACTION INDEXING' ? ? ? ? ? ?
7 'MODEL FITTING' ? ? ? ? ? ?
8 'MODEL REFINEMENT' ? ? ? ? ? ?
9 OTHER ? ? ? ? ? ?
10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ?
11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ?
12 CLASSIFICATION ? ? ? 1 ? ?
13 RECONSTRUCTION ? RELION 3.1.2 1 ? ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration 1
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States'
HHSN272201400008C 1
'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 75N93019C00051 2
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
4 NAG 1 n
4 NAG 2 n
#
_atom_sites.entry_id 7RBU
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_