data_7RBU # _entry.id 7RBU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7RBU pdb_00007rbu 10.2210/pdb7rbu/pdb WWPDB D_1000257982 ? ? EMDB EMD-24402 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-05-04 2 'Structure model' 1 1 2022-07-06 3 'Structure model' 1 2 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' em_admin 5 3 'Structure model' pdbx_entry_details 6 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_em_admin.last_update' 3 3 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7RBU _pdbx_database_status.recvd_initial_deposition_date 2021-07-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-24402 'associated EM volume' EMDB . EMD-24403 'other EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email goran.bajic@mssm.edu _pdbx_contact_author.name_first Goran _pdbx_contact_author.name_last Bajic _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0480-4324 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Altomare, C.G.' 1 0000-0002-7564-704X 'Bajic, G.' 2 0000-0003-0480-4324 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Mbio _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2150-7511 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first e0358021 _citation.page_last e0358021 _citation.title ;Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1128/mbio.03580-21 _citation.pdbx_database_id_PubMed 35467422 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Altomare, C.G.' 1 ? primary 'Adelsberg, D.C.' 2 ? primary 'Carreno, J.M.' 3 ? primary 'Sapse, I.A.' 4 ? primary 'Amanat, F.' 5 ? primary 'Ellebedy, A.H.' 6 ? primary 'Simon, V.' 7 ? primary 'Krammer, F.' 8 0000-0003-4121-776X primary 'Bajic, G.' 9 0000-0003-0480-4324 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 33417.703 1 ? ? 'N-terminal domain (UNP residues 14-307)' ? 2 polymer man 'PVI.V6-14 Fab heavy chain, variable region' 13932.396 1 ? ? ? ? 3 polymer man 'PVI.V6-14 Fab light chain, variable region' 11385.669 1 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'IGL c713_light_IGKV1-12_IGKJ4' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT ; ;QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT ; B ? 2 'polypeptide(L)' no no ;QVQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQF SLKLSSVTAADTAVYYCARCRPEYYFGSGSYLDFDYWGQGTLVTVSS ; ;QVQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQF SLKLSSVTAADTAVYYCARCRPEYYFGSGSYLDFDYWGQGTLVTVSS ; H ? 3 'polypeptide(L)' no no ;DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQANSFPLTFGGGTKVEIK ; ;DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQANSFPLTFGGGTKVEIK ; L ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 CYS n 1 3 VAL n 1 4 ASN n 1 5 LEU n 1 6 THR n 1 7 THR n 1 8 ARG n 1 9 THR n 1 10 GLN n 1 11 LEU n 1 12 PRO n 1 13 PRO n 1 14 ALA n 1 15 TYR n 1 16 THR n 1 17 ASN n 1 18 SER n 1 19 PHE n 1 20 THR n 1 21 ARG n 1 22 GLY n 1 23 VAL n 1 24 TYR n 1 25 TYR n 1 26 PRO n 1 27 ASP n 1 28 LYS n 1 29 VAL n 1 30 PHE n 1 31 ARG n 1 32 SER n 1 33 SER n 1 34 VAL n 1 35 LEU n 1 36 HIS n 1 37 SER n 1 38 THR n 1 39 GLN n 1 40 ASP n 1 41 LEU n 1 42 PHE n 1 43 LEU n 1 44 PRO n 1 45 PHE n 1 46 PHE n 1 47 SER n 1 48 ASN n 1 49 VAL n 1 50 THR n 1 51 TRP n 1 52 PHE n 1 53 HIS n 1 54 ALA n 1 55 ILE n 1 56 HIS n 1 57 VAL n 1 58 SER n 1 59 GLY n 1 60 THR n 1 61 ASN n 1 62 GLY n 1 63 THR n 1 64 LYS n 1 65 ARG n 1 66 PHE n 1 67 ASP n 1 68 ASN n 1 69 PRO n 1 70 VAL n 1 71 LEU n 1 72 PRO n 1 73 PHE n 1 74 ASN n 1 75 ASP n 1 76 GLY n 1 77 VAL n 1 78 TYR n 1 79 PHE n 1 80 ALA n 1 81 SER n 1 82 THR n 1 83 GLU n 1 84 LYS n 1 85 SER n 1 86 ASN n 1 87 ILE n 1 88 ILE n 1 89 ARG n 1 90 GLY n 1 91 TRP n 1 92 ILE n 1 93 PHE n 1 94 GLY n 1 95 THR n 1 96 THR n 1 97 LEU n 1 98 ASP n 1 99 SER n 1 100 LYS n 1 101 THR n 1 102 GLN n 1 103 SER n 1 104 LEU n 1 105 LEU n 1 106 ILE n 1 107 VAL n 1 108 ASN n 1 109 ASN n 1 110 ALA n 1 111 THR n 1 112 ASN n 1 113 VAL n 1 114 VAL n 1 115 ILE n 1 116 LYS n 1 117 VAL n 1 118 CYS n 1 119 GLU n 1 120 PHE n 1 121 GLN n 1 122 PHE n 1 123 CYS n 1 124 ASN n 1 125 ASP n 1 126 PRO n 1 127 PHE n 1 128 LEU n 1 129 GLY n 1 130 VAL n 1 131 TYR n 1 132 TYR n 1 133 HIS n 1 134 LYS n 1 135 ASN n 1 136 ASN n 1 137 LYS n 1 138 SER n 1 139 TRP n 1 140 MET n 1 141 GLU n 1 142 SER n 1 143 GLU n 1 144 PHE n 1 145 ARG n 1 146 VAL n 1 147 TYR n 1 148 SER n 1 149 SER n 1 150 ALA n 1 151 ASN n 1 152 ASN n 1 153 CYS n 1 154 THR n 1 155 PHE n 1 156 GLU n 1 157 TYR n 1 158 VAL n 1 159 SER n 1 160 GLN n 1 161 PRO n 1 162 PHE n 1 163 LEU n 1 164 MET n 1 165 ASP n 1 166 LEU n 1 167 GLU n 1 168 GLY n 1 169 LYS n 1 170 GLN n 1 171 GLY n 1 172 ASN n 1 173 PHE n 1 174 LYS n 1 175 ASN n 1 176 LEU n 1 177 ARG n 1 178 GLU n 1 179 PHE n 1 180 VAL n 1 181 PHE n 1 182 LYS n 1 183 ASN n 1 184 ILE n 1 185 ASP n 1 186 GLY n 1 187 TYR n 1 188 PHE n 1 189 LYS n 1 190 ILE n 1 191 TYR n 1 192 SER n 1 193 LYS n 1 194 HIS n 1 195 THR n 1 196 PRO n 1 197 ILE n 1 198 ASN n 1 199 LEU n 1 200 VAL n 1 201 ARG n 1 202 ASP n 1 203 LEU n 1 204 PRO n 1 205 GLN n 1 206 GLY n 1 207 PHE n 1 208 SER n 1 209 ALA n 1 210 LEU n 1 211 GLU n 1 212 PRO n 1 213 LEU n 1 214 VAL n 1 215 ASP n 1 216 LEU n 1 217 PRO n 1 218 ILE n 1 219 GLY n 1 220 ILE n 1 221 ASN n 1 222 ILE n 1 223 THR n 1 224 ARG n 1 225 PHE n 1 226 GLN n 1 227 THR n 1 228 LEU n 1 229 LEU n 1 230 ALA n 1 231 LEU n 1 232 HIS n 1 233 ARG n 1 234 SER n 1 235 TYR n 1 236 LEU n 1 237 THR n 1 238 PRO n 1 239 GLY n 1 240 ASP n 1 241 SER n 1 242 SER n 1 243 SER n 1 244 GLY n 1 245 TRP n 1 246 THR n 1 247 ALA n 1 248 GLY n 1 249 ALA n 1 250 ALA n 1 251 ALA n 1 252 TYR n 1 253 TYR n 1 254 VAL n 1 255 GLY n 1 256 TYR n 1 257 LEU n 1 258 GLN n 1 259 PRO n 1 260 ARG n 1 261 THR n 1 262 PHE n 1 263 LEU n 1 264 LEU n 1 265 LYS n 1 266 TYR n 1 267 ASN n 1 268 GLU n 1 269 ASN n 1 270 GLY n 1 271 THR n 1 272 ILE n 1 273 THR n 1 274 ASP n 1 275 ALA n 1 276 VAL n 1 277 ASP n 1 278 CYS n 1 279 ALA n 1 280 LEU n 1 281 ASP n 1 282 PRO n 1 283 LEU n 1 284 SER n 1 285 GLU n 1 286 THR n 1 287 LYS n 1 288 CYS n 1 289 THR n 1 290 LEU n 1 291 LYS n 1 292 SER n 1 293 PHE n 1 294 THR n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 LYS n 2 14 PRO n 2 15 SER n 2 16 GLU n 2 17 THR n 2 18 LEU n 2 19 SER n 2 20 LEU n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 GLY n 2 28 SER n 2 29 ILE n 2 30 SER n 2 31 SER n 2 32 SER n 2 33 SER n 2 34 TYR n 2 35 TYR n 2 36 TRP n 2 37 GLY n 2 38 TRP n 2 39 ILE n 2 40 ARG n 2 41 GLN n 2 42 PRO n 2 43 PRO n 2 44 GLY n 2 45 LYS n 2 46 GLY n 2 47 LEU n 2 48 GLU n 2 49 TRP n 2 50 ILE n 2 51 GLY n 2 52 SER n 2 53 ILE n 2 54 TYR n 2 55 TYR n 2 56 SER n 2 57 GLY n 2 58 SER n 2 59 THR n 2 60 TYR n 2 61 TYR n 2 62 ASN n 2 63 PRO n 2 64 SER n 2 65 LEU n 2 66 LYS n 2 67 SER n 2 68 ARG n 2 69 VAL n 2 70 THR n 2 71 ILE n 2 72 SER n 2 73 VAL n 2 74 ASP n 2 75 THR n 2 76 SER n 2 77 LYS n 2 78 ASN n 2 79 GLN n 2 80 PHE n 2 81 SER n 2 82 LEU n 2 83 LYS n 2 84 LEU n 2 85 SER n 2 86 SER n 2 87 VAL n 2 88 THR n 2 89 ALA n 2 90 ALA n 2 91 ASP n 2 92 THR n 2 93 ALA n 2 94 VAL n 2 95 TYR n 2 96 TYR n 2 97 CYS n 2 98 ALA n 2 99 ARG n 2 100 CYS n 2 101 ARG n 2 102 PRO n 2 103 GLU n 2 104 TYR n 2 105 TYR n 2 106 PHE n 2 107 GLY n 2 108 SER n 2 109 GLY n 2 110 SER n 2 111 TYR n 2 112 LEU n 2 113 ASP n 2 114 PHE n 2 115 ASP n 2 116 TYR n 2 117 TRP n 2 118 GLY n 2 119 GLN n 2 120 GLY n 2 121 THR n 2 122 LEU n 2 123 VAL n 2 124 THR n 2 125 VAL n 2 126 SER n 2 127 SER n 3 1 ASP n 3 2 ILE n 3 3 GLN n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 SER n 3 10 SER n 3 11 VAL n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 VAL n 3 16 GLY n 3 17 ASP n 3 18 ARG n 3 19 VAL n 3 20 THR n 3 21 ILE n 3 22 THR n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 GLY n 3 29 ILE n 3 30 SER n 3 31 SER n 3 32 TRP n 3 33 LEU n 3 34 ALA n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LYS n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ALA n 3 51 ALA n 3 52 SER n 3 53 SER n 3 54 LEU n 3 55 GLN n 3 56 SER n 3 57 GLY n 3 58 VAL n 3 59 PRO n 3 60 SER n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 ASP n 3 71 PHE n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ILE n 3 76 SER n 3 77 SER n 3 78 LEU n 3 79 GLN n 3 80 PRO n 3 81 GLU n 3 82 ASP n 3 83 PHE n 3 84 ALA n 3 85 THR n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 GLN n 3 90 GLN n 3 91 ALA n 3 92 ASN n 3 93 SER n 3 94 PHE n 3 95 PRO n 3 96 LEU n 3 97 THR n 3 98 PHE n 3 99 GLY n 3 100 GLY n 3 101 GLY n 3 102 THR n 3 103 LYS n 3 104 VAL n 3 105 GLU n 3 106 ILE n 3 107 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 294 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? Expi293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 127 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? Expi293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 107 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? Expi293 ? ? Expi293 ? ? ? ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 14 14 GLN GLN B . n A 1 2 CYS 2 15 15 CYS CYS B . n A 1 3 VAL 3 16 16 VAL VAL B . n A 1 4 ASN 4 17 17 ASN ASN B . n A 1 5 LEU 5 18 18 LEU LEU B . n A 1 6 THR 6 19 19 THR THR B . n A 1 7 THR 7 20 20 THR THR B . n A 1 8 ARG 8 21 21 ARG ARG B . n A 1 9 THR 9 22 22 THR THR B . n A 1 10 GLN 10 23 23 GLN GLN B . n A 1 11 LEU 11 24 24 LEU LEU B . n A 1 12 PRO 12 25 25 PRO PRO B . n A 1 13 PRO 13 26 26 PRO PRO B . n A 1 14 ALA 14 27 27 ALA ALA B . n A 1 15 TYR 15 28 28 TYR TYR B . n A 1 16 THR 16 29 29 THR THR B . n A 1 17 ASN 17 30 30 ASN ASN B . n A 1 18 SER 18 31 31 SER SER B . n A 1 19 PHE 19 32 32 PHE PHE B . n A 1 20 THR 20 33 33 THR THR B . n A 1 21 ARG 21 34 34 ARG ARG B . n A 1 22 GLY 22 35 35 GLY GLY B . n A 1 23 VAL 23 36 36 VAL VAL B . n A 1 24 TYR 24 37 37 TYR TYR B . n A 1 25 TYR 25 38 38 TYR TYR B . n A 1 26 PRO 26 39 39 PRO PRO B . n A 1 27 ASP 27 40 40 ASP ASP B . n A 1 28 LYS 28 41 41 LYS LYS B . n A 1 29 VAL 29 42 42 VAL VAL B . n A 1 30 PHE 30 43 43 PHE PHE B . n A 1 31 ARG 31 44 44 ARG ARG B . n A 1 32 SER 32 45 45 SER SER B . n A 1 33 SER 33 46 46 SER SER B . n A 1 34 VAL 34 47 47 VAL VAL B . n A 1 35 LEU 35 48 48 LEU LEU B . n A 1 36 HIS 36 49 49 HIS HIS B . n A 1 37 SER 37 50 50 SER SER B . n A 1 38 THR 38 51 51 THR THR B . n A 1 39 GLN 39 52 52 GLN GLN B . n A 1 40 ASP 40 53 53 ASP ASP B . n A 1 41 LEU 41 54 54 LEU LEU B . n A 1 42 PHE 42 55 55 PHE PHE B . n A 1 43 LEU 43 56 56 LEU LEU B . n A 1 44 PRO 44 57 57 PRO PRO B . n A 1 45 PHE 45 58 58 PHE PHE B . n A 1 46 PHE 46 59 59 PHE PHE B . n A 1 47 SER 47 60 60 SER SER B . n A 1 48 ASN 48 61 61 ASN ASN B . n A 1 49 VAL 49 62 62 VAL VAL B . n A 1 50 THR 50 63 63 THR THR B . n A 1 51 TRP 51 64 64 TRP TRP B . n A 1 52 PHE 52 65 65 PHE PHE B . n A 1 53 HIS 53 66 66 HIS HIS B . n A 1 54 ALA 54 67 67 ALA ALA B . n A 1 55 ILE 55 68 68 ILE ILE B . n A 1 56 HIS 56 69 69 HIS HIS B . n A 1 57 VAL 57 70 70 VAL VAL B . n A 1 58 SER 58 71 71 SER SER B . n A 1 59 GLY 59 72 72 GLY GLY B . n A 1 60 THR 60 73 73 THR THR B . n A 1 61 ASN 61 74 74 ASN ASN B . n A 1 62 GLY 62 75 75 GLY GLY B . n A 1 63 THR 63 76 76 THR THR B . n A 1 64 LYS 64 77 77 LYS LYS B . n A 1 65 ARG 65 78 78 ARG ARG B . n A 1 66 PHE 66 79 79 PHE PHE B . n A 1 67 ASP 67 80 80 ASP ASP B . n A 1 68 ASN 68 81 81 ASN ASN B . n A 1 69 PRO 69 82 82 PRO PRO B . n A 1 70 VAL 70 83 83 VAL VAL B . n A 1 71 LEU 71 84 84 LEU LEU B . n A 1 72 PRO 72 85 85 PRO PRO B . n A 1 73 PHE 73 86 86 PHE PHE B . n A 1 74 ASN 74 87 87 ASN ASN B . n A 1 75 ASP 75 88 88 ASP ASP B . n A 1 76 GLY 76 89 89 GLY GLY B . n A 1 77 VAL 77 90 90 VAL VAL B . n A 1 78 TYR 78 91 91 TYR TYR B . n A 1 79 PHE 79 92 92 PHE PHE B . n A 1 80 ALA 80 93 93 ALA ALA B . n A 1 81 SER 81 94 94 SER SER B . n A 1 82 THR 82 95 95 THR THR B . n A 1 83 GLU 83 96 96 GLU GLU B . n A 1 84 LYS 84 97 97 LYS LYS B . n A 1 85 SER 85 98 98 SER SER B . n A 1 86 ASN 86 99 99 ASN ASN B . n A 1 87 ILE 87 100 100 ILE ILE B . n A 1 88 ILE 88 101 101 ILE ILE B . n A 1 89 ARG 89 102 102 ARG ARG B . n A 1 90 GLY 90 103 103 GLY GLY B . n A 1 91 TRP 91 104 104 TRP TRP B . n A 1 92 ILE 92 105 105 ILE ILE B . n A 1 93 PHE 93 106 106 PHE PHE B . n A 1 94 GLY 94 107 107 GLY GLY B . n A 1 95 THR 95 108 108 THR THR B . n A 1 96 THR 96 109 109 THR THR B . n A 1 97 LEU 97 110 110 LEU LEU B . n A 1 98 ASP 98 111 111 ASP ASP B . n A 1 99 SER 99 112 112 SER SER B . n A 1 100 LYS 100 113 113 LYS LYS B . n A 1 101 THR 101 114 114 THR THR B . n A 1 102 GLN 102 115 115 GLN GLN B . n A 1 103 SER 103 116 116 SER SER B . n A 1 104 LEU 104 117 117 LEU LEU B . n A 1 105 LEU 105 118 118 LEU LEU B . n A 1 106 ILE 106 119 119 ILE ILE B . n A 1 107 VAL 107 120 120 VAL VAL B . n A 1 108 ASN 108 121 121 ASN ASN B . n A 1 109 ASN 109 122 122 ASN ASN B . n A 1 110 ALA 110 123 123 ALA ALA B . n A 1 111 THR 111 124 124 THR THR B . n A 1 112 ASN 112 125 125 ASN ASN B . n A 1 113 VAL 113 126 126 VAL VAL B . n A 1 114 VAL 114 127 127 VAL VAL B . n A 1 115 ILE 115 128 128 ILE ILE B . n A 1 116 LYS 116 129 129 LYS LYS B . n A 1 117 VAL 117 130 130 VAL VAL B . n A 1 118 CYS 118 131 131 CYS CYS B . n A 1 119 GLU 119 132 132 GLU GLU B . n A 1 120 PHE 120 133 133 PHE PHE B . n A 1 121 GLN 121 134 134 GLN GLN B . n A 1 122 PHE 122 135 135 PHE PHE B . n A 1 123 CYS 123 136 136 CYS CYS B . n A 1 124 ASN 124 137 137 ASN ASN B . n A 1 125 ASP 125 138 138 ASP ASP B . n A 1 126 PRO 126 139 139 PRO PRO B . n A 1 127 PHE 127 140 140 PHE PHE B . n A 1 128 LEU 128 141 141 LEU LEU B . n A 1 129 GLY 129 142 142 GLY GLY B . n A 1 130 VAL 130 143 143 VAL VAL B . n A 1 131 TYR 131 144 144 TYR TYR B . n A 1 132 TYR 132 145 145 TYR TYR B . n A 1 133 HIS 133 146 146 HIS HIS B . n A 1 134 LYS 134 147 147 LYS LYS B . n A 1 135 ASN 135 148 148 ASN ASN B . n A 1 136 ASN 136 149 149 ASN ASN B . n A 1 137 LYS 137 150 150 LYS LYS B . n A 1 138 SER 138 151 151 SER SER B . n A 1 139 TRP 139 152 152 TRP TRP B . n A 1 140 MET 140 153 153 MET MET B . n A 1 141 GLU 141 154 154 GLU GLU B . n A 1 142 SER 142 155 155 SER SER B . n A 1 143 GLU 143 156 156 GLU GLU B . n A 1 144 PHE 144 157 157 PHE PHE B . n A 1 145 ARG 145 158 158 ARG ARG B . n A 1 146 VAL 146 159 159 VAL VAL B . n A 1 147 TYR 147 160 160 TYR TYR B . n A 1 148 SER 148 161 161 SER SER B . n A 1 149 SER 149 162 162 SER SER B . n A 1 150 ALA 150 163 163 ALA ALA B . n A 1 151 ASN 151 164 164 ASN ASN B . n A 1 152 ASN 152 165 165 ASN ASN B . n A 1 153 CYS 153 166 166 CYS CYS B . n A 1 154 THR 154 167 167 THR THR B . n A 1 155 PHE 155 168 168 PHE PHE B . n A 1 156 GLU 156 169 169 GLU GLU B . n A 1 157 TYR 157 170 170 TYR TYR B . n A 1 158 VAL 158 171 171 VAL VAL B . n A 1 159 SER 159 172 172 SER SER B . n A 1 160 GLN 160 173 173 GLN GLN B . n A 1 161 PRO 161 174 174 PRO PRO B . n A 1 162 PHE 162 175 175 PHE PHE B . n A 1 163 LEU 163 176 176 LEU LEU B . n A 1 164 MET 164 177 177 MET MET B . n A 1 165 ASP 165 178 178 ASP ASP B . n A 1 166 LEU 166 179 179 LEU LEU B . n A 1 167 GLU 167 180 180 GLU GLU B . n A 1 168 GLY 168 181 181 GLY GLY B . n A 1 169 LYS 169 182 182 LYS LYS B . n A 1 170 GLN 170 183 183 GLN GLN B . n A 1 171 GLY 171 184 184 GLY GLY B . n A 1 172 ASN 172 185 185 ASN ASN B . n A 1 173 PHE 173 186 186 PHE PHE B . n A 1 174 LYS 174 187 187 LYS LYS B . n A 1 175 ASN 175 188 188 ASN ASN B . n A 1 176 LEU 176 189 189 LEU LEU B . n A 1 177 ARG 177 190 190 ARG ARG B . n A 1 178 GLU 178 191 191 GLU GLU B . n A 1 179 PHE 179 192 192 PHE PHE B . n A 1 180 VAL 180 193 193 VAL VAL B . n A 1 181 PHE 181 194 194 PHE PHE B . n A 1 182 LYS 182 195 195 LYS LYS B . n A 1 183 ASN 183 196 196 ASN ASN B . n A 1 184 ILE 184 197 197 ILE ILE B . n A 1 185 ASP 185 198 198 ASP ASP B . n A 1 186 GLY 186 199 199 GLY GLY B . n A 1 187 TYR 187 200 200 TYR TYR B . n A 1 188 PHE 188 201 201 PHE PHE B . n A 1 189 LYS 189 202 202 LYS LYS B . n A 1 190 ILE 190 203 203 ILE ILE B . n A 1 191 TYR 191 204 204 TYR TYR B . n A 1 192 SER 192 205 205 SER SER B . n A 1 193 LYS 193 206 206 LYS LYS B . n A 1 194 HIS 194 207 207 HIS HIS B . n A 1 195 THR 195 208 208 THR THR B . n A 1 196 PRO 196 209 209 PRO PRO B . n A 1 197 ILE 197 210 210 ILE ILE B . n A 1 198 ASN 198 211 211 ASN ASN B . n A 1 199 LEU 199 212 212 LEU LEU B . n A 1 200 VAL 200 213 213 VAL VAL B . n A 1 201 ARG 201 214 214 ARG ARG B . n A 1 202 ASP 202 215 215 ASP ASP B . n A 1 203 LEU 203 216 216 LEU LEU B . n A 1 204 PRO 204 217 217 PRO PRO B . n A 1 205 GLN 205 218 218 GLN GLN B . n A 1 206 GLY 206 219 219 GLY GLY B . n A 1 207 PHE 207 220 220 PHE PHE B . n A 1 208 SER 208 221 221 SER SER B . n A 1 209 ALA 209 222 222 ALA ALA B . n A 1 210 LEU 210 223 223 LEU LEU B . n A 1 211 GLU 211 224 224 GLU GLU B . n A 1 212 PRO 212 225 225 PRO PRO B . n A 1 213 LEU 213 226 226 LEU LEU B . n A 1 214 VAL 214 227 227 VAL VAL B . n A 1 215 ASP 215 228 228 ASP ASP B . n A 1 216 LEU 216 229 229 LEU LEU B . n A 1 217 PRO 217 230 230 PRO PRO B . n A 1 218 ILE 218 231 231 ILE ILE B . n A 1 219 GLY 219 232 232 GLY GLY B . n A 1 220 ILE 220 233 233 ILE ILE B . n A 1 221 ASN 221 234 234 ASN ASN B . n A 1 222 ILE 222 235 235 ILE ILE B . n A 1 223 THR 223 236 236 THR THR B . n A 1 224 ARG 224 237 237 ARG ARG B . n A 1 225 PHE 225 238 238 PHE PHE B . n A 1 226 GLN 226 239 239 GLN GLN B . n A 1 227 THR 227 240 240 THR THR B . n A 1 228 LEU 228 241 241 LEU LEU B . n A 1 229 LEU 229 242 242 LEU LEU B . n A 1 230 ALA 230 243 243 ALA ALA B . n A 1 231 LEU 231 244 244 LEU LEU B . n A 1 232 HIS 232 245 245 HIS HIS B . n A 1 233 ARG 233 246 246 ARG ARG B . n A 1 234 SER 234 247 247 SER SER B . n A 1 235 TYR 235 248 248 TYR TYR B . n A 1 236 LEU 236 249 249 LEU LEU B . n A 1 237 THR 237 250 250 THR THR B . n A 1 238 PRO 238 251 251 PRO PRO B . n A 1 239 GLY 239 252 252 GLY GLY B . n A 1 240 ASP 240 253 253 ASP ASP B . n A 1 241 SER 241 254 254 SER SER B . n A 1 242 SER 242 255 255 SER SER B . n A 1 243 SER 243 256 256 SER SER B . n A 1 244 GLY 244 257 257 GLY GLY B . n A 1 245 TRP 245 258 258 TRP TRP B . n A 1 246 THR 246 259 259 THR THR B . n A 1 247 ALA 247 260 260 ALA ALA B . n A 1 248 GLY 248 261 261 GLY GLY B . n A 1 249 ALA 249 262 262 ALA ALA B . n A 1 250 ALA 250 263 263 ALA ALA B . n A 1 251 ALA 251 264 264 ALA ALA B . n A 1 252 TYR 252 265 265 TYR TYR B . n A 1 253 TYR 253 266 266 TYR TYR B . n A 1 254 VAL 254 267 267 VAL VAL B . n A 1 255 GLY 255 268 268 GLY GLY B . n A 1 256 TYR 256 269 269 TYR TYR B . n A 1 257 LEU 257 270 270 LEU LEU B . n A 1 258 GLN 258 271 271 GLN GLN B . n A 1 259 PRO 259 272 272 PRO PRO B . n A 1 260 ARG 260 273 273 ARG ARG B . n A 1 261 THR 261 274 274 THR THR B . n A 1 262 PHE 262 275 275 PHE PHE B . n A 1 263 LEU 263 276 276 LEU LEU B . n A 1 264 LEU 264 277 277 LEU LEU B . n A 1 265 LYS 265 278 278 LYS LYS B . n A 1 266 TYR 266 279 279 TYR TYR B . n A 1 267 ASN 267 280 280 ASN ASN B . n A 1 268 GLU 268 281 281 GLU GLU B . n A 1 269 ASN 269 282 282 ASN ASN B . n A 1 270 GLY 270 283 283 GLY GLY B . n A 1 271 THR 271 284 284 THR THR B . n A 1 272 ILE 272 285 285 ILE ILE B . n A 1 273 THR 273 286 286 THR THR B . n A 1 274 ASP 274 287 287 ASP ASP B . n A 1 275 ALA 275 288 288 ALA ALA B . n A 1 276 VAL 276 289 289 VAL VAL B . n A 1 277 ASP 277 290 290 ASP ASP B . n A 1 278 CYS 278 291 291 CYS CYS B . n A 1 279 ALA 279 292 ? ? ? B . n A 1 280 LEU 280 293 ? ? ? B . n A 1 281 ASP 281 294 ? ? ? B . n A 1 282 PRO 282 295 ? ? ? B . n A 1 283 LEU 283 296 ? ? ? B . n A 1 284 SER 284 297 ? ? ? B . n A 1 285 GLU 285 298 ? ? ? B . n A 1 286 THR 286 299 ? ? ? B . n A 1 287 LYS 287 300 ? ? ? B . n A 1 288 CYS 288 301 ? ? ? B . n A 1 289 THR 289 302 ? ? ? B . n A 1 290 LEU 290 303 ? ? ? B . n A 1 291 LYS 291 304 ? ? ? B . n A 1 292 SER 292 305 ? ? ? B . n A 1 293 PHE 293 306 ? ? ? B . n A 1 294 THR 294 307 ? ? ? B . n B 2 1 GLN 1 1 ? ? ? H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 GLN 5 5 5 GLN GLN H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 LYS 13 13 13 LYS LYS H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 SER 15 15 15 SER SER H . n B 2 16 GLU 16 16 16 GLU GLU H . n B 2 17 THR 17 17 17 THR THR H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 SER 19 19 19 SER SER H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 THR 21 21 21 THR THR H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 THR 23 23 23 THR THR H . n B 2 24 VAL 24 24 24 VAL VAL H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 GLY 27 27 27 GLY GLY H . n B 2 28 SER 28 28 28 SER SER H . n B 2 29 ILE 29 29 29 ILE ILE H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 SER 31 31 31 SER SER H . n B 2 32 SER 32 32 32 SER SER H . n B 2 33 SER 33 33 33 SER SER H . n B 2 34 TYR 34 34 34 TYR TYR H . n B 2 35 TYR 35 35 35 TYR TYR H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 GLY 37 37 37 GLY GLY H . n B 2 38 TRP 38 38 38 TRP TRP H . n B 2 39 ILE 39 39 39 ILE ILE H . n B 2 40 ARG 40 40 40 ARG ARG H . n B 2 41 GLN 41 41 41 GLN GLN H . n B 2 42 PRO 42 42 42 PRO PRO H . n B 2 43 PRO 43 43 43 PRO PRO H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LYS 45 45 45 LYS LYS H . n B 2 46 GLY 46 46 46 GLY GLY H . n B 2 47 LEU 47 47 47 LEU LEU H . n B 2 48 GLU 48 48 48 GLU GLU H . n B 2 49 TRP 49 49 49 TRP TRP H . n B 2 50 ILE 50 50 50 ILE ILE H . n B 2 51 GLY 51 51 51 GLY GLY H . n B 2 52 SER 52 52 52 SER SER H . n B 2 53 ILE 53 53 53 ILE ILE H . n B 2 54 TYR 54 54 54 TYR TYR H . n B 2 55 TYR 55 55 55 TYR TYR H . n B 2 56 SER 56 56 56 SER SER H . n B 2 57 GLY 57 57 57 GLY GLY H . n B 2 58 SER 58 58 58 SER SER H . n B 2 59 THR 59 59 59 THR THR H . n B 2 60 TYR 60 60 60 TYR TYR H . n B 2 61 TYR 61 61 61 TYR TYR H . n B 2 62 ASN 62 62 62 ASN ASN H . n B 2 63 PRO 63 63 63 PRO PRO H . n B 2 64 SER 64 64 64 SER SER H . n B 2 65 LEU 65 65 65 LEU LEU H . n B 2 66 LYS 66 66 66 LYS LYS H . n B 2 67 SER 67 67 67 SER SER H . n B 2 68 ARG 68 68 68 ARG ARG H . n B 2 69 VAL 69 69 69 VAL VAL H . n B 2 70 THR 70 70 70 THR THR H . n B 2 71 ILE 71 71 71 ILE ILE H . n B 2 72 SER 72 72 72 SER SER H . n B 2 73 VAL 73 73 73 VAL VAL H . n B 2 74 ASP 74 74 74 ASP ASP H . n B 2 75 THR 75 75 75 THR THR H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 LYS 77 77 77 LYS LYS H . n B 2 78 ASN 78 78 78 ASN ASN H . n B 2 79 GLN 79 79 79 GLN GLN H . n B 2 80 PHE 80 80 80 PHE PHE H . n B 2 81 SER 81 81 81 SER SER H . n B 2 82 LEU 82 82 82 LEU LEU H . n B 2 83 LYS 83 83 83 LYS LYS H . n B 2 84 LEU 84 84 84 LEU LEU H . n B 2 85 SER 85 85 85 SER SER H . n B 2 86 SER 86 86 86 SER SER H . n B 2 87 VAL 87 87 87 VAL VAL H . n B 2 88 THR 88 88 88 THR THR H . n B 2 89 ALA 89 89 89 ALA ALA H . n B 2 90 ALA 90 90 90 ALA ALA H . n B 2 91 ASP 91 91 91 ASP ASP H . n B 2 92 THR 92 92 92 THR THR H . n B 2 93 ALA 93 93 93 ALA ALA H . n B 2 94 VAL 94 94 94 VAL VAL H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 TYR 96 96 96 TYR TYR H . n B 2 97 CYS 97 97 97 CYS CYS H . n B 2 98 ALA 98 98 98 ALA ALA H . n B 2 99 ARG 99 99 99 ARG ARG H . n B 2 100 CYS 100 100 100 CYS CYS H . n B 2 101 ARG 101 101 101 ARG ARG H . n B 2 102 PRO 102 102 102 PRO PRO H . n B 2 103 GLU 103 103 103 GLU GLU H . n B 2 104 TYR 104 104 104 TYR TYR H . n B 2 105 TYR 105 105 105 TYR TYR H . n B 2 106 PHE 106 106 106 PHE PHE H . n B 2 107 GLY 107 107 107 GLY GLY H . n B 2 108 SER 108 108 108 SER SER H . n B 2 109 GLY 109 109 109 GLY GLY H . n B 2 110 SER 110 110 110 SER SER H . n B 2 111 TYR 111 111 111 TYR TYR H . n B 2 112 LEU 112 112 112 LEU LEU H . n B 2 113 ASP 113 113 113 ASP ASP H . n B 2 114 PHE 114 114 114 PHE PHE H . n B 2 115 ASP 115 115 115 ASP ASP H . n B 2 116 TYR 116 116 116 TYR TYR H . n B 2 117 TRP 117 117 117 TRP TRP H . n B 2 118 GLY 118 118 118 GLY GLY H . n B 2 119 GLN 119 119 119 GLN GLN H . n B 2 120 GLY 120 120 120 GLY GLY H . n B 2 121 THR 121 121 121 THR THR H . n B 2 122 LEU 122 122 122 LEU LEU H . n B 2 123 VAL 123 123 123 VAL VAL H . n B 2 124 THR 124 124 124 THR THR H . n B 2 125 VAL 125 125 125 VAL VAL H . n B 2 126 SER 126 126 126 SER SER H . n B 2 127 SER 127 127 ? ? ? H . n C 3 1 ASP 1 1 1 ASP ASP L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 GLN 3 3 3 GLN GLN L . n C 3 4 MET 4 4 4 MET MET L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 SER 9 9 9 SER SER L . n C 3 10 SER 10 10 10 SER SER L . n C 3 11 VAL 11 11 11 VAL VAL L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 ALA 13 13 13 ALA ALA L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 VAL 15 15 15 VAL VAL L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 ARG 18 18 18 ARG ARG L . n C 3 19 VAL 19 19 19 VAL VAL L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 ILE 21 21 21 ILE ILE L . n C 3 22 THR 22 22 22 THR THR L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 GLY 28 28 28 GLY GLY L . n C 3 29 ILE 29 29 29 ILE ILE L . n C 3 30 SER 30 30 30 SER SER L . n C 3 31 SER 31 31 31 SER SER L . n C 3 32 TRP 32 32 32 TRP TRP L . n C 3 33 LEU 33 33 33 LEU LEU L . n C 3 34 ALA 34 34 34 ALA ALA L . n C 3 35 TRP 35 35 35 TRP TRP L . n C 3 36 TYR 36 36 36 TYR TYR L . n C 3 37 GLN 37 37 37 GLN GLN L . n C 3 38 GLN 38 38 38 GLN GLN L . n C 3 39 LYS 39 39 39 LYS LYS L . n C 3 40 PRO 40 40 40 PRO PRO L . n C 3 41 GLY 41 41 41 GLY GLY L . n C 3 42 LYS 42 42 42 LYS LYS L . n C 3 43 ALA 43 43 43 ALA ALA L . n C 3 44 PRO 44 44 44 PRO PRO L . n C 3 45 LYS 45 45 45 LYS LYS L . n C 3 46 LEU 46 46 46 LEU LEU L . n C 3 47 LEU 47 47 47 LEU LEU L . n C 3 48 ILE 48 48 48 ILE ILE L . n C 3 49 TYR 49 49 49 TYR TYR L . n C 3 50 ALA 50 50 50 ALA ALA L . n C 3 51 ALA 51 51 51 ALA ALA L . n C 3 52 SER 52 52 52 SER SER L . n C 3 53 SER 53 53 53 SER SER L . n C 3 54 LEU 54 54 54 LEU LEU L . n C 3 55 GLN 55 55 55 GLN GLN L . n C 3 56 SER 56 56 56 SER SER L . n C 3 57 GLY 57 57 57 GLY GLY L . n C 3 58 VAL 58 58 58 VAL VAL L . n C 3 59 PRO 59 59 59 PRO PRO L . n C 3 60 SER 60 60 60 SER SER L . n C 3 61 ARG 61 61 61 ARG ARG L . n C 3 62 PHE 62 62 62 PHE PHE L . n C 3 63 SER 63 63 63 SER SER L . n C 3 64 GLY 64 64 64 GLY GLY L . n C 3 65 SER 65 65 65 SER SER L . n C 3 66 GLY 66 66 66 GLY GLY L . n C 3 67 SER 67 67 67 SER SER L . n C 3 68 GLY 68 68 68 GLY GLY L . n C 3 69 THR 69 69 69 THR THR L . n C 3 70 ASP 70 70 70 ASP ASP L . n C 3 71 PHE 71 71 71 PHE PHE L . n C 3 72 THR 72 72 72 THR THR L . n C 3 73 LEU 73 73 73 LEU LEU L . n C 3 74 THR 74 74 74 THR THR L . n C 3 75 ILE 75 75 75 ILE ILE L . n C 3 76 SER 76 76 76 SER SER L . n C 3 77 SER 77 77 77 SER SER L . n C 3 78 LEU 78 78 78 LEU LEU L . n C 3 79 GLN 79 79 79 GLN GLN L . n C 3 80 PRO 80 80 80 PRO PRO L . n C 3 81 GLU 81 81 81 GLU GLU L . n C 3 82 ASP 82 82 82 ASP ASP L . n C 3 83 PHE 83 83 83 PHE PHE L . n C 3 84 ALA 84 84 84 ALA ALA L . n C 3 85 THR 85 85 85 THR THR L . n C 3 86 TYR 86 86 86 TYR TYR L . n C 3 87 TYR 87 87 87 TYR TYR L . n C 3 88 CYS 88 88 88 CYS CYS L . n C 3 89 GLN 89 89 89 GLN GLN L . n C 3 90 GLN 90 90 90 GLN GLN L . n C 3 91 ALA 91 91 91 ALA ALA L . n C 3 92 ASN 92 92 92 ASN ASN L . n C 3 93 SER 93 93 93 SER SER L . n C 3 94 PHE 94 94 94 PHE PHE L . n C 3 95 PRO 95 95 95 PRO PRO L . n C 3 96 LEU 96 96 96 LEU LEU L . n C 3 97 THR 97 97 97 THR THR L . n C 3 98 PHE 98 98 98 PHE PHE L . n C 3 99 GLY 99 99 99 GLY GLY L . n C 3 100 GLY 100 100 100 GLY GLY L . n C 3 101 GLY 101 101 101 GLY GLY L . n C 3 102 THR 102 102 102 THR THR L . n C 3 103 LYS 103 103 103 LYS LYS L . n C 3 104 VAL 104 104 104 VAL VAL L . n C 3 105 GLU 105 105 105 GLU GLU L . n C 3 106 ILE 106 106 106 ILE ILE L . n C 3 107 LYS 107 107 107 LYS LYS L . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 A NAG 1 B NAG 293 n D 4 NAG 2 A NAG 2 B NAG 294 n E 4 NAG 1 C NAG 1 B NAG 314 n E 4 NAG 2 C NAG 2 B NAG 315 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG 1 401 301 NAG NAG B . G 5 NAG 1 402 312 NAG NAG B . H 5 NAG 1 403 313 NAG NAG B . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7RBU _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7RBU _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7RBU _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 ? 4218 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.676 ? 5741 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.592 ? 598 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 647 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 721 ? f_plane_restr ? ? # _struct.entry_id 7RBU _struct.title 'SARS-CoV-2 Spike in complex with PVI.V6-14 Fab' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7RBU _struct_keywords.text 'virus, neutralizing antibody, vaccine, plasmablast, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA STEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQ PFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGD SSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT ; 14 2 PDB 7RBU 7RBU ? 2 ? 1 3 UNP A0A5C2FYK4_HUMAN A0A5C2FYK4 ? 3 ;DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQANSFPLTFGGGTKVEIK ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7RBU B 1 ? 294 ? P0DTC2 14 ? 307 ? 14 307 2 2 7RBU H 1 ? 127 ? 7RBU 1 ? 127 ? 1 127 3 3 7RBU L 1 ? 107 ? A0A5C2FYK4 1 ? 107 ? 1 107 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 123 SG ? ? B CYS 15 B CYS 136 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 118 SG ? ? ? 1_555 A CYS 153 SG ? ? B CYS 131 B CYS 166 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 97 SG ? ? H CYS 22 H CYS 97 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf4 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.042 ? ? covale1 covale one ? A ASN 4 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 17 C NAG 1 1_555 ? ? ? ? ? ? ? 1.434 ? N-Glycosylation covale2 covale one ? A ASN 48 ND2 ? ? ? 1_555 G NAG . C1 ? ? B ASN 61 B NAG 402 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale3 covale one ? A ASN 109 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 122 A NAG 1 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation covale4 covale one ? A ASN 136 ND2 ? ? ? 1_555 H NAG . C1 ? ? B ASN 149 B NAG 403 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale5 covale one ? A ASN 221 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 234 B NAG 401 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale6 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale7 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN A 109 ? NAG A 1 ? 1_555 ASN B 122 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG E . ? ASN A 4 ? NAG C 1 ? 1_555 ASN B 17 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG F . ? ASN A 221 ? NAG B 401 ? 1_555 ASN B 234 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG G . ? ASN A 48 ? NAG B 402 ? 1_555 ASN B 61 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 NAG H . ? ASN A 136 ? NAG B 403 ? 1_555 ASN B 149 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 6 CYS A 2 ? CYS A 123 ? CYS B 15 ? 1_555 CYS B 136 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 118 ? CYS A 153 ? CYS B 131 ? 1_555 CYS B 166 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 22 ? CYS B 97 ? CYS H 22 ? 1_555 CYS H 97 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS C 23 ? CYS C 88 ? CYS L 23 ? 1_555 CYS L 88 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 6 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 4 ? AB1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AB1 1 2 ? parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 14 ? SER A 18 ? ALA B 27 SER B 31 AA1 2 SER A 47 ? VAL A 57 ? SER B 60 VAL B 70 AA1 3 ALA A 249 ? TYR A 256 ? ALA B 262 TYR B 269 AA1 4 GLY A 76 ? GLU A 83 ? GLY B 89 GLU B 96 AA1 5 LEU A 176 ? ILE A 184 ? LEU B 189 ILE B 197 AA1 6 TYR A 187 ? THR A 195 ? TYR B 200 THR B 208 AA1 7 ALA A 209 ? PRO A 217 ? ALA B 222 PRO B 230 AA1 8 VAL A 23 ? TYR A 24 ? VAL B 36 TYR B 37 AA2 1 ALA A 14 ? SER A 18 ? ALA B 27 SER B 31 AA2 2 SER A 47 ? VAL A 57 ? SER B 60 VAL B 70 AA2 3 THR A 63 ? LYS A 64 ? THR B 76 LYS B 77 AA3 1 LEU A 35 ? PHE A 42 ? LEU B 48 PHE B 55 AA3 2 GLN A 258 ? TYR A 266 ? GLN B 271 TYR B 279 AA3 3 ILE A 272 ? ASP A 277 ? ILE B 285 ASP B 290 AA4 1 LEU A 71 ? PRO A 72 ? LEU B 84 PRO B 85 AA4 2 ARG A 224 ? LEU A 231 ? ARG B 237 LEU B 244 AA4 3 PHE A 122 ? GLY A 129 ? PHE B 135 GLY B 142 AA4 4 ARG A 145 ? TYR A 147 ? ARG B 158 TYR B 160 AA5 1 LEU A 71 ? PRO A 72 ? LEU B 84 PRO B 85 AA5 2 ARG A 224 ? LEU A 231 ? ARG B 237 LEU B 244 AA5 3 ILE A 88 ? GLY A 94 ? ILE B 101 GLY B 107 AA5 4 SER A 103 ? ASN A 108 ? SER B 116 ASN B 121 AA5 5 VAL A 113 ? GLU A 119 ? VAL B 126 GLU B 132 AA5 6 ASN A 151 ? VAL A 158 ? ASN B 164 VAL B 171 AA6 1 PHE A 162 ? LEU A 163 ? PHE B 175 LEU B 176 AA6 2 SER B 110 ? ASP B 115 ? SER H 110 ASP H 115 AA6 3 ALA B 93 ? PRO B 102 ? ALA H 93 PRO H 102 AA6 4 TRP B 36 ? GLN B 41 ? TRP H 36 GLN H 41 AA6 5 GLU B 48 ? ILE B 53 ? GLU H 48 ILE H 53 AA6 6 TYR B 60 ? TYR B 61 ? TYR H 60 TYR H 61 AA7 1 PHE A 162 ? LEU A 163 ? PHE B 175 LEU B 176 AA7 2 SER B 110 ? ASP B 115 ? SER H 110 ASP H 115 AA7 3 ALA B 93 ? PRO B 102 ? ALA H 93 PRO H 102 AA7 4 THR B 121 ? VAL B 123 ? THR H 121 VAL H 123 AA8 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 AA8 2 THR B 21 ? SER B 25 ? THR H 21 SER H 25 AA8 3 GLN B 79 ? LEU B 84 ? GLN H 79 LEU H 84 AA8 4 VAL B 69 ? ASP B 74 ? VAL H 69 ASP H 74 AA9 1 THR C 5 ? GLN C 6 ? THR L 5 GLN L 6 AA9 2 VAL C 19 ? ARG C 24 ? VAL L 19 ARG L 24 AA9 3 THR C 72 ? ILE C 75 ? THR L 72 ILE L 75 AA9 4 PHE C 62 ? SER C 63 ? PHE L 62 SER L 63 AB1 1 VAL C 11 ? ALA C 13 ? VAL L 11 ALA L 13 AB1 2 THR C 102 ? ILE C 106 ? THR L 102 ILE L 106 AB1 3 ALA C 84 ? GLN C 90 ? ALA L 84 GLN L 90 AB1 4 LEU C 33 ? GLN C 38 ? LEU L 33 GLN L 38 AB1 5 LYS C 45 ? TYR C 49 ? LYS L 45 TYR L 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 16 ? N THR B 29 O VAL A 49 ? O VAL B 62 AA1 2 3 N THR A 50 ? N THR B 63 O VAL A 254 ? O VAL B 267 AA1 3 4 O GLY A 255 ? O GLY B 268 N TYR A 78 ? N TYR B 91 AA1 4 5 N VAL A 77 ? N VAL B 90 O PHE A 181 ? O PHE B 194 AA1 5 6 N LYS A 182 ? N LYS B 195 O LYS A 189 ? O LYS B 202 AA1 6 7 N ILE A 190 ? N ILE B 203 O VAL A 214 ? O VAL B 227 AA1 7 8 O LEU A 210 ? O LEU B 223 N VAL A 23 ? N VAL B 36 AA2 1 2 N THR A 16 ? N THR B 29 O VAL A 49 ? O VAL B 62 AA2 2 3 N VAL A 57 ? N VAL B 70 O THR A 63 ? O THR B 76 AA3 1 2 N ASP A 40 ? N ASP B 53 O ARG A 260 ? O ARG B 273 AA3 2 3 N LEU A 263 ? N LEU B 276 O VAL A 276 ? O VAL B 289 AA4 1 2 N LEU A 71 ? N LEU B 84 O PHE A 225 ? O PHE B 238 AA4 2 3 O LEU A 231 ? O LEU B 244 N LEU A 128 ? N LEU B 141 AA4 3 4 N PHE A 127 ? N PHE B 140 O ARG A 145 ? O ARG B 158 AA5 1 2 N LEU A 71 ? N LEU B 84 O PHE A 225 ? O PHE B 238 AA5 2 3 O ARG A 224 ? O ARG B 237 N GLY A 94 ? N GLY B 107 AA5 3 4 N PHE A 93 ? N PHE B 106 O LEU A 104 ? O LEU B 117 AA5 4 5 N VAL A 107 ? N VAL B 120 O VAL A 114 ? O VAL B 127 AA5 5 6 N ILE A 115 ? N ILE B 128 O TYR A 157 ? O TYR B 170 AA6 1 2 N LEU A 163 ? N LEU B 176 O SER B 110 ? O SER H 110 AA6 2 3 O TYR B 111 ? O TYR H 111 N ARG B 101 ? N ARG H 101 AA6 3 4 O TYR B 96 ? O TYR H 96 N ILE B 39 ? N ILE H 39 AA6 4 5 N TRP B 36 ? N TRP H 36 O ILE B 53 ? O ILE H 53 AA6 5 6 N SER B 52 ? N SER H 52 O TYR B 60 ? O TYR H 60 AA7 1 2 N LEU A 163 ? N LEU B 176 O SER B 110 ? O SER H 110 AA7 2 3 O TYR B 111 ? O TYR H 111 N ARG B 101 ? N ARG H 101 AA7 3 4 N ALA B 93 ? N ALA H 93 O VAL B 123 ? O VAL H 123 AA8 1 2 N GLN B 3 ? N GLN H 3 O SER B 25 ? O SER H 25 AA8 2 3 N CYS B 22 ? N CYS H 22 O PHE B 80 ? O PHE H 80 AA8 3 4 O LYS B 83 ? O LYS H 83 N THR B 70 ? N THR H 70 AA9 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 AA9 2 3 N ILE C 21 ? N ILE L 21 O LEU C 73 ? O LEU L 73 AA9 3 4 O THR C 74 ? O THR L 74 N SER C 63 ? N SER L 63 AB1 1 2 N VAL C 11 ? N VAL L 11 O GLU C 105 ? O GLU L 105 AB1 2 3 O THR C 102 ? O THR L 102 N TYR C 86 ? N TYR L 86 AB1 3 4 O GLN C 89 ? O GLN L 89 N ALA C 34 ? N ALA L 34 AB1 4 5 N GLN C 37 ? N GLN L 37 O LYS C 45 ? O LYS L 45 # _pdbx_entry_details.entry_id 7RBU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 L _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 52 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 GLY _pdbx_validate_close_contact.auth_seq_id_2 64 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 20 ? ? -144.49 30.93 2 1 LEU B 24 ? ? -172.20 149.15 3 1 ASP B 40 ? ? -162.12 -165.85 4 1 ASN B 74 ? ? 53.06 -141.09 5 1 ASN B 81 ? ? -151.83 71.69 6 1 ASN B 87 ? ? 59.22 -123.14 7 1 GLU B 156 ? ? -173.28 136.07 8 1 SER B 162 ? ? -163.28 115.26 9 1 THR B 167 ? ? -99.82 -66.14 10 1 LYS B 187 ? ? -140.51 23.23 11 1 ASP B 198 ? ? 55.99 -131.39 12 1 ASN B 211 ? ? -140.53 43.52 13 1 ASP B 215 ? ? 94.60 176.31 14 1 ILE B 231 ? ? -125.52 -59.20 15 1 ARG B 246 ? ? -163.53 118.28 16 1 SER B 255 ? ? 72.37 -4.27 17 1 SER H 56 ? ? 61.64 61.36 18 1 LEU H 112 ? ? -97.63 57.18 19 1 ASP L 17 ? ? -160.32 -165.89 20 1 ALA L 50 ? ? 55.82 -158.28 21 1 SER L 53 ? ? -166.26 -167.73 22 1 SER L 56 ? ? 55.25 -143.26 23 1 SER L 67 ? ? -166.16 -167.08 24 1 PRO L 80 ? ? -57.65 -8.39 # _em_3d_fitting.entry_id 7RBU _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7RBU _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 60639 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'SARS-CoV-2 Spike:PVI.V6-14 Fab complex' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7RBU _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7RBU _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7RBU _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ALA 292 ? A ALA 279 2 1 Y 1 B LEU 293 ? A LEU 280 3 1 Y 1 B ASP 294 ? A ASP 281 4 1 Y 1 B PRO 295 ? A PRO 282 5 1 Y 1 B LEU 296 ? A LEU 283 6 1 Y 1 B SER 297 ? A SER 284 7 1 Y 1 B GLU 298 ? A GLU 285 8 1 Y 1 B THR 299 ? A THR 286 9 1 Y 1 B LYS 300 ? A LYS 287 10 1 Y 1 B CYS 301 ? A CYS 288 11 1 Y 1 B THR 302 ? A THR 289 12 1 Y 1 B LEU 303 ? A LEU 290 13 1 Y 1 B LYS 304 ? A LYS 291 14 1 Y 1 B SER 305 ? A SER 292 15 1 Y 1 B PHE 306 ? A PHE 293 16 1 Y 1 B THR 307 ? A THR 294 17 1 Y 1 H GLN 1 ? B GLN 1 18 1 Y 1 H SER 127 ? B SER 127 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.entry_id 7RBU _em_admin.current_status REL _em_admin.deposition_date 2021-07-06 _em_admin.deposition_site RCSB _em_admin.last_update 2024-10-09 _em_admin.map_release_date 2022-05-04 _em_admin.title 'SARS-CoV-2 Spike in complex with PVI.V6-14 Fab' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 550 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell Expi293 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? RELION 3.1.2 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' HHSN272201400008C 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 75N93019C00051 2 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n # _atom_sites.entry_id 7RBU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_