HEADER IMMUNE SYSTEM 09-JUL-21 7RDK TITLE CRYSTAL STRUCTURE OF PCDN-16B, AN ANTI-HIV ANTIBODY FROM THE PCDN BNAB TITLE 2 LINEAGE (CYSTEINYLATED STATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCDN-16B FAB LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PCDN-16B FAB HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, BROADLY NEUTRALIZING, HIV-1, CYSTEINYLATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR O.OMORODION,I.A.WILSON REVDAT 3 18-OCT-23 7RDK 1 REMARK REVDAT 2 17-NOV-21 7RDK 1 JRNL REVDAT 1 10-NOV-21 7RDK 0 JRNL AUTH O.OMORODION,I.A.WILSON JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF JRNL TITL 2 CYSTEINYLATION IN BROADLY NEUTRALIZING ANTIBODIES TO HIV-1. JRNL REF J.MOL.BIOL. V. 433 67303 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34666044 JRNL DOI 10.1016/J.JMB.2021.167303 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 14003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5500 - 4.2000 0.94 2745 155 0.1549 0.1901 REMARK 3 2 4.2000 - 3.3300 0.96 2754 172 0.1837 0.2350 REMARK 3 3 3.3300 - 2.9100 0.94 2719 145 0.2480 0.2967 REMARK 3 4 2.9100 - 2.6500 0.93 2668 129 0.2916 0.3867 REMARK 3 5 2.6500 - 2.4600 0.83 2415 101 0.3129 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.413 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.904 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3485 REMARK 3 ANGLE : 0.516 4745 REMARK 3 CHIRALITY : 0.041 531 REMARK 3 PLANARITY : 0.005 608 REMARK 3 DIHEDRAL : 14.343 1248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 0:61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 201.464 -51.654 102.269 REMARK 3 T TENSOR REMARK 3 T11: 0.3187 T22: 0.1972 REMARK 3 T33: 0.3624 T12: -0.0568 REMARK 3 T13: 0.0282 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 4.2689 L22: 6.0356 REMARK 3 L33: 7.1048 L12: -0.0046 REMARK 3 L13: 0.2903 L23: 0.3364 REMARK 3 S TENSOR REMARK 3 S11: -0.0275 S12: -0.0138 S13: -0.2149 REMARK 3 S21: -0.1798 S22: 0.2286 S23: 0.2881 REMARK 3 S31: 0.4072 S32: -0.1897 S33: -0.1651 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 62:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 199.467 -48.746 98.209 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.1808 REMARK 3 T33: 0.3706 T12: 0.0408 REMARK 3 T13: -0.0212 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 0.4751 L22: 2.2023 REMARK 3 L33: 3.2719 L12: -0.2200 REMARK 3 L13: 0.9138 L23: -2.2180 REMARK 3 S TENSOR REMARK 3 S11: 0.2643 S12: -0.0708 S13: -0.2047 REMARK 3 S21: -0.2606 S22: 0.2143 S23: 0.3319 REMARK 3 S31: 0.3278 S32: -0.0032 S33: -0.4810 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 114:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 203.268 -19.697 84.337 REMARK 3 T TENSOR REMARK 3 T11: 0.2329 T22: 0.2612 REMARK 3 T33: 0.3384 T12: 0.0456 REMARK 3 T13: 0.0637 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.3935 L22: 6.8231 REMARK 3 L33: 0.8559 L12: 2.8433 REMARK 3 L13: 0.6527 L23: 0.1628 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: 0.1922 S13: 0.3491 REMARK 3 S21: -0.3016 S22: 0.1112 S23: -0.1232 REMARK 3 S31: 0.0127 S32: -0.0289 S33: -0.0439 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 207.204 -37.159 119.909 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.2801 REMARK 3 T33: 0.4955 T12: 0.0234 REMARK 3 T13: 0.1911 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 0.7168 L22: 4.5451 REMARK 3 L33: 2.4718 L12: -0.0171 REMARK 3 L13: 0.6067 L23: -0.8368 REMARK 3 S TENSOR REMARK 3 S11: 0.2913 S12: -0.1153 S13: 0.5877 REMARK 3 S21: 0.6556 S22: 0.3934 S23: -0.1139 REMARK 3 S31: -0.3945 S32: 0.1670 S33: -0.5688 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 41:63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 214.741 -43.641 114.988 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.2528 REMARK 3 T33: 0.6107 T12: 0.0083 REMARK 3 T13: 0.0451 T23: -0.1581 REMARK 3 L TENSOR REMARK 3 L11: 4.9097 L22: 4.9186 REMARK 3 L33: 6.0972 L12: -3.1111 REMARK 3 L13: 2.6522 L23: -0.8715 REMARK 3 S TENSOR REMARK 3 S11: -0.0758 S12: 0.1195 S13: -0.3371 REMARK 3 S21: 0.4812 S22: 0.3866 S23: -0.6414 REMARK 3 S31: 0.1782 S32: 0.9340 S33: -0.3558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 64:82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 214.387 -38.465 123.342 REMARK 3 T TENSOR REMARK 3 T11: 0.3789 T22: 0.3060 REMARK 3 T33: 0.3089 T12: 0.0548 REMARK 3 T13: -0.1019 T23: -0.0893 REMARK 3 L TENSOR REMARK 3 L11: 2.7654 L22: 7.3577 REMARK 3 L33: 4.9215 L12: 2.0385 REMARK 3 L13: 2.4790 L23: -2.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: -0.2370 S13: -0.2912 REMARK 3 S21: 0.9179 S22: -0.2069 S23: -0.5734 REMARK 3 S31: 0.1757 S32: 0.6093 S33: 0.2372 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 82:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 210.943 -48.285 118.085 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.3086 REMARK 3 T33: 0.4427 T12: -0.0010 REMARK 3 T13: 0.1046 T23: -0.1135 REMARK 3 L TENSOR REMARK 3 L11: 2.0308 L22: 9.2801 REMARK 3 L33: 1.5967 L12: -2.5037 REMARK 3 L13: 0.6893 L23: -3.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: -0.0554 S13: -0.3082 REMARK 3 S21: -0.2463 S22: 0.3317 S23: 0.3728 REMARK 3 S31: 0.0371 S32: 0.0760 S33: -0.1649 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 100:134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 201.697 -25.620 102.365 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.2909 REMARK 3 T33: 0.3953 T12: 0.0671 REMARK 3 T13: 0.1117 T23: -0.1572 REMARK 3 L TENSOR REMARK 3 L11: 0.9088 L22: 2.4645 REMARK 3 L33: 0.6099 L12: -0.4710 REMARK 3 L13: 0.4898 L23: -1.0556 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.0968 S13: -0.0114 REMARK 3 S21: -0.0588 S22: 0.0187 S23: 0.0419 REMARK 3 S31: -0.0372 S32: 0.0229 S33: -0.0141 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 135:154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 197.289 -16.127 98.970 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.4487 REMARK 3 T33: 0.2525 T12: 0.0557 REMARK 3 T13: 0.0646 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 5.2566 L22: 0.9994 REMARK 3 L33: 1.5656 L12: -0.4766 REMARK 3 L13: 0.8786 L23: -1.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.2650 S12: -1.1365 S13: 0.2711 REMARK 3 S21: 0.3239 S22: 0.1831 S23: 0.0057 REMARK 3 S31: -0.2199 S32: -0.5726 S33: -0.1509 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 155:165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 185.839 -19.177 96.020 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.5336 REMARK 3 T33: 0.3514 T12: -0.0832 REMARK 3 T13: 0.0104 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 5.0607 L22: 6.5935 REMARK 3 L33: 0.4039 L12: -1.8143 REMARK 3 L13: 1.4153 L23: -0.2929 REMARK 3 S TENSOR REMARK 3 S11: -0.2237 S12: -0.6105 S13: 0.0239 REMARK 3 S21: 0.1651 S22: 0.0295 S23: 1.3669 REMARK 3 S31: -0.0771 S32: -0.6828 S33: 0.0561 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 166:200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 195.250 -16.031 95.572 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.2881 REMARK 3 T33: 0.3642 T12: -0.0212 REMARK 3 T13: 0.1395 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 5.0807 L22: 2.9876 REMARK 3 L33: 3.2434 L12: 0.8106 REMARK 3 L13: 2.4572 L23: 0.2924 REMARK 3 S TENSOR REMARK 3 S11: 0.1816 S12: -0.4088 S13: -0.0836 REMARK 3 S21: 0.1412 S22: -0.0028 S23: -0.1579 REMARK 3 S31: -0.2577 S32: -0.3595 S33: -0.1770 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 201:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 194.105 -8.056 98.073 REMARK 3 T TENSOR REMARK 3 T11: 0.3714 T22: 0.6248 REMARK 3 T33: 0.8188 T12: 0.1159 REMARK 3 T13: 0.0482 T23: -0.2132 REMARK 3 L TENSOR REMARK 3 L11: 3.4836 L22: 3.9678 REMARK 3 L33: 5.1696 L12: -0.7278 REMARK 3 L13: 4.1679 L23: -0.3576 REMARK 3 S TENSOR REMARK 3 S11: -0.6202 S12: -0.2621 S13: 1.2139 REMARK 3 S21: 0.0870 S22: 0.2279 S23: -0.7327 REMARK 3 S31: -0.5601 S32: 0.5015 S33: 0.2565 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 301:301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 202.751 -52.780 117.248 REMARK 3 T TENSOR REMARK 3 T11: 0.3367 T22: 0.6754 REMARK 3 T33: 0.6435 T12: 0.1878 REMARK 3 T13: 0.1856 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 5.0527 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 7.9172 REMARK 3 L13: 8.5589 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.3021 S12: -1.1018 S13: -0.0002 REMARK 3 S21: 0.5129 S22: 0.2652 S23: 1.1461 REMARK 3 S31: -0.2031 S32: 0.9649 S33: -0.4935 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.10 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 5BZD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 20% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A -1 REMARK 465 GLY B 190 REMARK 465 THR B 191 REMARK 465 ASP B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 -112.31 52.50 REMARK 500 VAL A 51 -57.11 67.01 REMARK 500 ALA A 84 -169.19 -174.38 REMARK 500 SER A 93 -136.97 -123.75 REMARK 500 ASN A 138 76.71 54.77 REMARK 500 SER B 15 -2.88 68.08 REMARK 500 LYS B 64 -133.04 63.54 REMARK 500 ARG B 65 60.50 -102.70 REMARK 500 ASP B 101 128.90 -170.44 REMARK 500 ASP B 144 78.09 58.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RDK A -1 214 PDB 7RDK 7RDK -1 214 DBREF 7RDK B 1 217 PDB 7RDK 7RDK 1 217 SEQRES 1 A 216 VAL HIS GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SEQRES 2 A 216 SER LEU SER PRO GLY GLU ARG ALA THR VAL SER CYS ARG SEQRES 3 A 216 ALA SER GLN SER VAL SER ALA SER ASN LEU ALA TRP TYR SEQRES 4 A 216 GLN GLN LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR SEQRES 5 A 216 GLY VAL SER SER ARG PRO THR GLY ILE PRO ASP ARG PHE SEQRES 6 A 216 SER GLY SER GLY SER GLY THR ASP PHE THR LEU THR VAL SEQRES 7 A 216 SER ARG LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS SEQRES 8 A 216 GLN GLN TYR GLY SER SER PRO THR PHE GLY GLN GLY THR SEQRES 9 A 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 A 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 A 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 A 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 A 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 A 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 A 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 A 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 A 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 232 GLN VAL GLN LEU GLN GLN TRP GLY ALA GLY LEU LEU LYS SEQRES 2 B 232 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL TYR GLY SEQRES 3 B 232 GLY SER LEU SER GLY ASN PHE TRP SER TRP ILE ARG GLN SEQRES 4 B 232 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 B 232 HIS SER GLY GLU THR ASN HIS ASN PRO SER LEU LYS ARG SEQRES 6 B 232 ARG VAL THR LEU SER VAL ASP THR SER LYS ASN GLN PHE SEQRES 7 B 232 SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR ALA SEQRES 8 B 232 VAL TYR TYR CYS ALA ARG GLY GLY PRO LYS VAL TYR TYR SEQRES 9 B 232 GLU TYR TRP SER GLY TYR VAL ASN ASN CYS PHE ASP PRO SEQRES 10 B 232 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER SEQRES 11 B 232 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 B 232 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 B 232 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 B 232 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 B 232 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 B 232 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 B 232 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 B 232 VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP HET GOL A 301 6 HET EDO A 302 4 HET CYS B 301 7 HET SO4 B 302 5 HET EDO B 303 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CYS CYSTEINE HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 CYS C3 H7 N O2 S FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *75(H2 O) HELIX 1 AA1 GLU A 79 PHE A 83 5 5 HELIX 2 AA2 SER A 121 LYS A 126 1 6 HELIX 3 AA3 LYS A 183 LYS A 188 1 6 HELIX 4 AA4 PRO B 61 LYS B 64 5 4 HELIX 5 AA5 THR B 83 THR B 87 5 5 HELIX 6 AA6 SER B 127 LYS B 129 5 3 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 ALA A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 VAL A 75 -1 O LEU A 73 N VAL A 21 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 AA2 5 THR A 10 LEU A 13 0 SHEET 2 AA2 5 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AA2 5 VAL A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AA2 5 LEU A 33 GLN A 38 -1 N GLN A 38 O VAL A 85 SHEET 5 AA2 5 ARG A 45 ILE A 48 -1 O ARG A 45 N GLN A 37 SHEET 1 AA3 4 THR A 10 LEU A 13 0 SHEET 2 AA3 4 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AA3 4 VAL A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O ASN A 137 N SER A 114 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O TYR A 173 N PHE A 139 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 ALA A 144 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 HIS A 198 -1 O GLU A 195 N GLN A 147 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 GLY B 8 0 SHEET 2 AA6 4 LEU B 18 TYR B 25 -1 O TYR B 25 N GLN B 3 SHEET 3 AA6 4 GLN B 77 LEU B 82 -1 O LEU B 82 N LEU B 18 SHEET 4 AA6 4 VAL B 67 ASP B 72 -1 N ASP B 72 O GLN B 77 SHEET 1 AA7 6 LEU B 11 LEU B 12 0 SHEET 2 AA7 6 THR B 107 VAL B 111 1 O THR B 110 N LEU B 12 SHEET 3 AA7 6 ALA B 88 TYR B 100 -1 N ALA B 88 O VAL B 109 SHEET 4 AA7 6 ASN B 32 GLN B 39 -1 N PHE B 33 O GLY B 95 SHEET 5 AA7 6 GLU B 46 ASN B 52 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 THR B 57 HIS B 59 -1 O ASN B 58 N GLU B 50 SHEET 1 AA8 4 LEU B 11 LEU B 12 0 SHEET 2 AA8 4 THR B 107 VAL B 111 1 O THR B 110 N LEU B 12 SHEET 3 AA8 4 ALA B 88 TYR B 100 -1 N ALA B 88 O VAL B 109 SHEET 4 AA8 4 SER B 100E TYR B 100G-1 O GLY B 100F N VAL B 99 SHEET 1 AA9 4 SER B 120 LEU B 124 0 SHEET 2 AA9 4 THR B 135 TYR B 145 -1 O LYS B 143 N SER B 120 SHEET 3 AA9 4 TYR B 176 PRO B 185 -1 O TYR B 176 N TYR B 145 SHEET 4 AA9 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AB1 4 THR B 131 SER B 132 0 SHEET 2 AB1 4 THR B 135 TYR B 145 -1 O THR B 135 N SER B 132 SHEET 3 AB1 4 TYR B 176 PRO B 185 -1 O TYR B 176 N TYR B 145 SHEET 4 AB1 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AB2 3 THR B 151 TRP B 154 0 SHEET 2 AB2 3 ILE B 195 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AB2 3 THR B 205 ARG B 210 -1 O VAL B 207 N VAL B 198 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS A 214 CYS B 216 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 5 CYS B 100K CYS B 301 1555 1555 2.03 SSBOND 6 CYS B 140 CYS B 196 1555 1555 2.03 CISPEP 1 SER A 7 PRO A 8 0 -4.88 CISPEP 2 TYR A 140 PRO A 141 0 1.90 CISPEP 3 ASP B 101 PRO B 102 0 -0.49 CISPEP 4 PHE B 146 PRO B 147 0 -3.07 CISPEP 5 GLU B 148 PRO B 149 0 -6.78 CRYST1 42.211 115.230 44.104 90.00 99.09 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023691 0.000000 0.003788 0.00000 SCALE2 0.000000 0.008678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022962 0.00000