HEADER IMMUNE SYSTEM 09-JUL-21 7RDM TITLE CRYSTAL STRUCTURE OF PCDN-38B, A BROADLY NEUTRALIZING ANTI-HIV TITLE 2 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCDN-38B FAB LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PCDN-38B FAB HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, BROADLY NEUTRALIZING, HIV-1, CYSTEINYLATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR O.OMORODION,I.A.WILSON REVDAT 3 18-OCT-23 7RDM 1 REMARK REVDAT 2 17-NOV-21 7RDM 1 JRNL REVDAT 1 10-NOV-21 7RDM 0 JRNL AUTH O.OMORODION,I.A.WILSON JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF JRNL TITL 2 CYSTEINYLATION IN BROADLY NEUTRALIZING ANTIBODIES TO HIV-1. JRNL REF J.MOL.BIOL. V. 433 67303 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34666044 JRNL DOI 10.1016/J.JMB.2021.167303 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5000 - 4.8900 0.99 2696 175 0.1759 0.1836 REMARK 3 2 4.8900 - 3.8800 1.00 2716 135 0.1334 0.1748 REMARK 3 3 3.8800 - 3.3900 1.00 2652 143 0.1560 0.1593 REMARK 3 4 3.3900 - 3.0800 1.00 2673 141 0.1821 0.2017 REMARK 3 5 3.0800 - 2.8600 1.00 2661 169 0.2081 0.2672 REMARK 3 6 2.8600 - 2.6900 0.99 2642 153 0.2161 0.2261 REMARK 3 7 2.6900 - 2.5600 1.00 2668 139 0.2275 0.2869 REMARK 3 8 2.5600 - 2.4400 0.99 2662 106 0.2279 0.2737 REMARK 3 9 2.4400 - 2.3500 1.00 2659 127 0.2513 0.2978 REMARK 3 10 2.3500 - 2.2700 0.99 2643 144 0.2594 0.3017 REMARK 3 11 2.2700 - 2.2000 0.99 2623 156 0.2789 0.3315 REMARK 3 12 2.2000 - 2.1400 0.99 2628 152 0.2936 0.3430 REMARK 3 13 2.1400 - 2.0800 0.94 2503 138 0.3011 0.3397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3690 REMARK 3 ANGLE : 0.578 5027 REMARK 3 CHIRALITY : 0.045 582 REMARK 3 PLANARITY : 0.005 626 REMARK 3 DIHEDRAL : 18.206 1346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -1:25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.724 -1.628 29.007 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.3655 REMARK 3 T33: 0.4190 T12: -0.1180 REMARK 3 T13: -0.0133 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 3.1647 L22: 1.9694 REMARK 3 L33: 6.2823 L12: -1.4722 REMARK 3 L13: 2.4067 L23: -0.6356 REMARK 3 S TENSOR REMARK 3 S11: 0.3347 S12: -0.1985 S13: -0.5561 REMARK 3 S21: 0.1215 S22: 0.2343 S23: 0.2628 REMARK 3 S31: 0.8042 S32: -0.4642 S33: -0.5042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 26:75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.968 7.127 34.546 REMARK 3 T TENSOR REMARK 3 T11: 0.4201 T22: 0.5821 REMARK 3 T33: 0.3515 T12: -0.0236 REMARK 3 T13: 0.0490 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.5777 L22: 3.9130 REMARK 3 L33: 3.1974 L12: -0.9873 REMARK 3 L13: 0.8872 L23: 1.1239 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.3769 S13: -0.0758 REMARK 3 S21: 0.2762 S22: 0.1830 S23: 0.3967 REMARK 3 S31: -0.0773 S32: -0.8550 S33: -0.3057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 76:128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.088 8.416 15.478 REMARK 3 T TENSOR REMARK 3 T11: 0.3043 T22: 0.2665 REMARK 3 T33: 0.3219 T12: 0.0156 REMARK 3 T13: 0.0071 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0302 L22: 0.9155 REMARK 3 L33: 3.2716 L12: 0.1797 REMARK 3 L13: 0.0727 L23: -0.2028 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: -0.1137 S13: -0.0296 REMARK 3 S21: 0.1196 S22: -0.0277 S23: 0.0155 REMARK 3 S31: 0.0577 S32: -0.0811 S33: -0.0456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 129:163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.952 3.558 -0.437 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.2800 REMARK 3 T33: 0.3199 T12: 0.0172 REMARK 3 T13: -0.0082 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 5.6331 L22: 0.9152 REMARK 3 L33: 4.4409 L12: -1.8929 REMARK 3 L13: -3.7368 L23: 0.6284 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: -0.1591 S13: -0.1830 REMARK 3 S21: -0.1185 S22: -0.0763 S23: 0.0939 REMARK 3 S31: 0.1730 S32: 0.1540 S33: 0.1698 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 164:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.955 7.279 -3.997 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.2006 REMARK 3 T33: 0.3062 T12: 0.0367 REMARK 3 T13: 0.0006 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 5.5772 L22: 1.1955 REMARK 3 L33: 6.2243 L12: 0.0142 REMARK 3 L13: -3.9168 L23: -0.3577 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: -0.0659 S13: -0.0802 REMARK 3 S21: -0.2475 S22: 0.0062 S23: -0.0918 REMARK 3 S31: -0.0231 S32: 0.3904 S33: 0.0725 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.198 15.301 37.625 REMARK 3 T TENSOR REMARK 3 T11: 0.4307 T22: 0.4202 REMARK 3 T33: 0.3229 T12: -0.0531 REMARK 3 T13: -0.0164 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.3070 L22: 2.9079 REMARK 3 L33: 3.1981 L12: -1.8978 REMARK 3 L13: 0.3991 L23: 0.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0574 S13: 0.2674 REMARK 3 S21: 0.2299 S22: -0.1259 S23: -0.1561 REMARK 3 S31: -0.3471 S32: 0.2437 S33: 0.1426 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 60:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.744 13.387 38.761 REMARK 3 T TENSOR REMARK 3 T11: 0.4003 T22: 0.4517 REMARK 3 T33: 0.3724 T12: -0.0336 REMARK 3 T13: -0.0288 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.1097 L22: 0.3359 REMARK 3 L33: 4.2551 L12: -0.2640 REMARK 3 L13: -0.2628 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.0380 S13: 0.1037 REMARK 3 S21: 0.1186 S22: -0.0490 S23: -0.1132 REMARK 3 S31: -0.1662 S32: 0.2009 S33: 0.0530 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 120:134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.884 19.665 -5.651 REMARK 3 T TENSOR REMARK 3 T11: 0.3675 T22: 0.4177 REMARK 3 T33: 0.3028 T12: 0.0121 REMARK 3 T13: 0.0130 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.8958 L22: 9.0474 REMARK 3 L33: 6.0727 L12: -0.2102 REMARK 3 L13: -4.1845 L23: 0.8020 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 1.2304 S13: 0.0033 REMARK 3 S21: -0.9667 S22: 0.0618 S23: 0.6674 REMARK 3 S31: -0.2153 S32: -0.7744 S33: -0.2627 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 135:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.072 20.494 5.994 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.2102 REMARK 3 T33: 0.2279 T12: -0.0510 REMARK 3 T13: 0.0324 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.1088 L22: 3.0109 REMARK 3 L33: 3.9148 L12: -0.2853 REMARK 3 L13: 0.7664 L23: -1.5008 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0141 S13: 0.0436 REMARK 3 S21: 0.0721 S22: -0.1162 S23: -0.1522 REMARK 3 S31: -0.2649 S32: 0.3537 S33: 0.1424 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 306:306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.327 15.236 40.127 REMARK 3 T TENSOR REMARK 3 T11: 1.0173 T22: 1.0334 REMARK 3 T33: 0.5090 T12: -0.1499 REMARK 3 T13: 0.0631 T23: -0.3492 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 1.9999 REMARK 3 L33: 2.0000 L12: 9.4877 REMARK 3 L13: -2.8126 L23: -5.4074 REMARK 3 S TENSOR REMARK 3 S11: -1.7935 S12: 0.4153 S13: -0.2362 REMARK 3 S21: 4.6572 S22: 2.3553 S23: -1.9807 REMARK 3 S31: -0.7342 S32: -1.5695 S33: -0.4696 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03309 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.98000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 5BZD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM DIHYDROGEN PHOSPHATE, 0.4 REMARK 280 M DIPOTASSIUM HYDROGEN PHOSPHATE, 0.1 M PHOSPHATE-CITRATE, PH REMARK 280 4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.34800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.03250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.34800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.03250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -137.68 52.17 REMARK 500 LYS A 31 62.97 -117.51 REMARK 500 ASN A 32 63.61 -100.04 REMARK 500 VAL A 51 -49.07 69.60 REMARK 500 ALA A 84 -177.37 -172.16 REMARK 500 SER A 93 -154.82 -115.32 REMARK 500 ASP B 101 123.18 -173.61 REMARK 500 SER B 132 126.29 67.52 REMARK 500 ASP B 144 62.78 64.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RDJ RELATED DB: PDB REMARK 900 STRUCTURE IN SAME PUBLICATION REMARK 900 RELATED ID: 7RDK RELATED DB: PDB REMARK 900 STRUCTURE IN SAME PUBLICATION REMARK 900 RELATED ID: 7RDL RELATED DB: PDB REMARK 900 STRUCTURE IN SAME PUBLICATION DBREF 7RDM A -1 214 PDB 7RDM 7RDM -1 214 DBREF 7RDM B 1 217 PDB 7RDM 7RDM 1 217 SEQRES 1 A 216 VAL HIS GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SEQRES 2 A 216 SER LEU SER PRO GLY GLU THR ALA SER LEU SER CYS ARG SEQRES 3 A 216 ALA SER GLN SER VAL SER ASP LYS ASN LEU ALA TRP TYR SEQRES 4 A 216 GLN GLN ARG PRO GLY LEU PRO PRO ARG LEU LEU ILE TYR SEQRES 5 A 216 GLY VAL SER LEU LYS ASN THR GLY VAL PRO ASP ARG PHE SEQRES 6 A 216 SER GLY SER GLY SER GLY THR ASN PHE THR LEU THR ILE SEQRES 7 A 216 THR SER LEU GLU SER GLU ASP SER ALA VAL TYR PHE CYS SEQRES 8 A 216 GLN GLN TYR GLY SER SER PRO THR PHE GLY GLN GLY THR SEQRES 9 A 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 A 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 A 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 A 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 A 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 A 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 A 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 A 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 A 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 232 GLN VAL GLN LEU GLN GLN TRP GLY THR GLY LEU LEU LYS SEQRES 2 B 232 PRO SER GLU SER LEU PHE LEU THR CYS ALA VAL TYR ASN SEQRES 3 B 232 GLU SER MET SER ALA PHE SER TRP SER TRP ILE ARG GLN SEQRES 4 B 232 SER ALA ASP LYS GLY LEU GLU TRP ILE GLY GLU ILE ASP SEQRES 5 B 232 HIS LEU GLN HIS VAL ASN TYR ASN PRO SER LEU THR GLY SEQRES 6 B 232 ARG PHE THR ILE SER ILE ASP THR SER LYS ASN GLN PHE SEQRES 7 B 232 SER LEU ARG PHE PHE SER VAL ILE ALA ALA ASP ALA ALA SEQRES 8 B 232 MET TYR TYR CYS ALA ARG GLY GLY ARG LYS VAL TYR HIS SEQRES 9 B 232 ALA TYR TRP THR GLY TYR VAL ASN ASN CYS PHE ASP PRO SEQRES 10 B 232 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER SEQRES 11 B 232 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 B 232 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 B 232 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 B 232 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 B 232 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 B 232 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 B 232 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 B 232 VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET NAG A 301 14 HET PO4 A 302 5 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET PO4 B 301 5 HET PO4 B 302 5 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET CYS B 306 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM CYS CYSTEINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 3 FUC C6 H12 O5 FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 GOL 9(C3 H8 O3) FORMUL 17 CYS C3 H7 N O2 S FORMUL 18 HOH *259(H2 O) HELIX 1 AA1 GLU A 79 SER A 83 5 5 HELIX 2 AA2 SER A 121 SER A 127 1 7 HELIX 3 AA3 LYS A 183 GLU A 187 1 5 HELIX 4 AA4 SER B 28 SER B 30 5 3 HELIX 5 AA5 ILE B 83 ALA B 87 5 5 HELIX 6 AA6 SER B 156 ALA B 158 5 3 HELIX 7 AA7 SER B 187 THR B 191 5 5 HELIX 8 AA8 LYS B 201 ASN B 204 5 4 SHEET 1 AA1 3 LEU A 4 SER A 7 0 SHEET 2 AA1 3 ALA A 19 VAL A 28 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 3 PHE A 62 ILE A 75 -1 O ILE A 75 N ALA A 19 SHEET 1 AA2 6 THR A 10 LEU A 13 0 SHEET 2 AA2 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA2 6 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 AA2 6 LEU A 33 GLN A 38 -1 N ALA A 34 O GLN A 89 SHEET 5 AA2 6 ARG A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 AA2 6 LEU A 53 LYS A 54 -1 O LEU A 53 N TYR A 49 SHEET 1 AA3 4 THR A 10 LEU A 13 0 SHEET 2 AA3 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O ALA A 193 N LYS A 149 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 GLY B 8 0 SHEET 2 AA6 4 LEU B 18 TYR B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 AA6 4 GLN B 77 PHE B 82 -1 O LEU B 80 N LEU B 20 SHEET 4 AA6 4 PHE B 67 ASP B 72 -1 N ASP B 72 O GLN B 77 SHEET 1 AA7 6 LEU B 11 LEU B 12 0 SHEET 2 AA7 6 THR B 107 VAL B 111 1 O THR B 110 N LEU B 12 SHEET 3 AA7 6 ALA B 88 TYR B 100 -1 N ALA B 88 O VAL B 109 SHEET 4 AA7 6 PHE B 32 SER B 40 -1 N ILE B 37 O TYR B 91 SHEET 5 AA7 6 GLY B 44 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 VAL B 57 TYR B 59 -1 O ASN B 58 N GLU B 50 SHEET 1 AA8 4 LEU B 11 LEU B 12 0 SHEET 2 AA8 4 THR B 107 VAL B 111 1 O THR B 110 N LEU B 12 SHEET 3 AA8 4 ALA B 88 TYR B 100 -1 N ALA B 88 O VAL B 109 SHEET 4 AA8 4 THR B 100E VAL B 100H-1 O GLY B 100F N VAL B 99 SHEET 1 AA9 4 SER B 120 LEU B 124 0 SHEET 2 AA9 4 THR B 135 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AA9 4 TYR B 176 PRO B 185 -1 O TYR B 176 N TYR B 145 SHEET 4 AA9 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AB1 4 SER B 120 LEU B 124 0 SHEET 2 AB1 4 THR B 135 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AB1 4 TYR B 176 PRO B 185 -1 O TYR B 176 N TYR B 145 SHEET 4 AB1 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AB2 3 THR B 151 TRP B 154 0 SHEET 2 AB2 3 ILE B 195 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AB2 3 THR B 205 ARG B 210 -1 O VAL B 207 N VAL B 198 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS A 214 CYS B 216 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 5 CYS B 100K CYS B 306 1555 1555 2.03 SSBOND 6 CYS B 140 CYS B 196 1555 1555 2.03 LINK ND2 ASN A 70 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN B 26 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 5 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 CISPEP 1 SER A 7 PRO A 8 0 -4.07 CISPEP 2 TYR A 140 PRO A 141 0 3.11 CISPEP 3 ASP B 101 PRO B 102 0 -1.63 CISPEP 4 PHE B 146 PRO B 147 0 -2.49 CISPEP 5 GLU B 148 PRO B 149 0 -1.09 CRYST1 116.696 68.065 77.937 90.00 96.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008569 0.000000 0.000998 0.00000 SCALE2 0.000000 0.014692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012918 0.00000