data_7RDN # _entry.id 7RDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7RDN pdb_00007rdn 10.2210/pdb7rdn/pdb WWPDB D_1000258049 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7RDN _pdbx_database_status.recvd_initial_deposition_date 2021-07-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hashimoto, H.' 1 0000-0002-5674-5779 'Ramirez, D.H.' 2 0000-0003-3288-9951 'Pawlak, N.' 3 0000-0003-0346-4903 'Blobel, G.' 4 ? 'Palancade, B.' 5 0000-0002-3894-9735 'Debler, E.W.' 6 0000-0002-2587-2150 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 17691 _citation.page_last 17691 _citation.title 'Structure of the pre-mRNA leakage 39-kDa protein reveals a single domain of integrated zf-C3HC and Rsm1 modules.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-022-22183-3 _citation.pdbx_database_id_PubMed 36271106 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hashimoto, H.' 1 ? primary 'Ramirez, D.H.' 2 ? primary 'Lautier, O.' 3 ? primary 'Pawlak, N.' 4 ? primary 'Blobel, G.' 5 ? primary 'Palancade, B.' 6 ? primary 'Debler, E.W.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7RDN _cell.details ? _cell.formula_units_Z ? _cell.length_a 53.010 _cell.length_a_esd ? _cell.length_b 53.010 _cell.length_b_esd ? _cell.length_c 171.270 _cell.length_c_esd ? _cell.volume 416799.835 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ;P 31 2" ; _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pre-mRNA leakage protein 39' 29087.699 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '39 kDa pre-mRNA leakage protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPHMAMGFRLHDLRALLKRICSIQNYTRHVLIEWDVRWVNPLTLASKGWEPYQSASQSQVPFKCCCCHAIMTIPLLKNGD DVADYTMKLNEKIWNSNIIGNHLQKCPWRENQVDLNKEYYLSSQNLIREIERIHTEIDRIVSGSNEFSLKRNSSRIFHYL SEKEIQKLAFFFDCKDYSLVGLLLLGYTKFQKDDLVQCTACFHRASLKKLEYTEFNGHALWCRYYNKELLPTMLLELIGK EDKLITK ; _entity_poly.pdbx_seq_one_letter_code_can ;GPHMAMGFRLHDLRALLKRICSIQNYTRHVLIEWDVRWVNPLTLASKGWEPYQSASQSQVPFKCCCCHAIMTIPLLKNGD DVADYTMKLNEKIWNSNIIGNHLQKCPWRENQVDLNKEYYLSSQNLIREIERIHTEIDRIVSGSNEFSLKRNSSRIFHYL SEKEIQKLAFFFDCKDYSLVGLLLLGYTKFQKDDLVQCTACFHRASLKKLEYTEFNGHALWCRYYNKELLPTMLLELIGK EDKLITK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 MET n 1 7 GLY n 1 8 PHE n 1 9 ARG n 1 10 LEU n 1 11 HIS n 1 12 ASP n 1 13 LEU n 1 14 ARG n 1 15 ALA n 1 16 LEU n 1 17 LEU n 1 18 LYS n 1 19 ARG n 1 20 ILE n 1 21 CYS n 1 22 SER n 1 23 ILE n 1 24 GLN n 1 25 ASN n 1 26 TYR n 1 27 THR n 1 28 ARG n 1 29 HIS n 1 30 VAL n 1 31 LEU n 1 32 ILE n 1 33 GLU n 1 34 TRP n 1 35 ASP n 1 36 VAL n 1 37 ARG n 1 38 TRP n 1 39 VAL n 1 40 ASN n 1 41 PRO n 1 42 LEU n 1 43 THR n 1 44 LEU n 1 45 ALA n 1 46 SER n 1 47 LYS n 1 48 GLY n 1 49 TRP n 1 50 GLU n 1 51 PRO n 1 52 TYR n 1 53 GLN n 1 54 SER n 1 55 ALA n 1 56 SER n 1 57 GLN n 1 58 SER n 1 59 GLN n 1 60 VAL n 1 61 PRO n 1 62 PHE n 1 63 LYS n 1 64 CYS n 1 65 CYS n 1 66 CYS n 1 67 CYS n 1 68 HIS n 1 69 ALA n 1 70 ILE n 1 71 MET n 1 72 THR n 1 73 ILE n 1 74 PRO n 1 75 LEU n 1 76 LEU n 1 77 LYS n 1 78 ASN n 1 79 GLY n 1 80 ASP n 1 81 ASP n 1 82 VAL n 1 83 ALA n 1 84 ASP n 1 85 TYR n 1 86 THR n 1 87 MET n 1 88 LYS n 1 89 LEU n 1 90 ASN n 1 91 GLU n 1 92 LYS n 1 93 ILE n 1 94 TRP n 1 95 ASN n 1 96 SER n 1 97 ASN n 1 98 ILE n 1 99 ILE n 1 100 GLY n 1 101 ASN n 1 102 HIS n 1 103 LEU n 1 104 GLN n 1 105 LYS n 1 106 CYS n 1 107 PRO n 1 108 TRP n 1 109 ARG n 1 110 GLU n 1 111 ASN n 1 112 GLN n 1 113 VAL n 1 114 ASP n 1 115 LEU n 1 116 ASN n 1 117 LYS n 1 118 GLU n 1 119 TYR n 1 120 TYR n 1 121 LEU n 1 122 SER n 1 123 SER n 1 124 GLN n 1 125 ASN n 1 126 LEU n 1 127 ILE n 1 128 ARG n 1 129 GLU n 1 130 ILE n 1 131 GLU n 1 132 ARG n 1 133 ILE n 1 134 HIS n 1 135 THR n 1 136 GLU n 1 137 ILE n 1 138 ASP n 1 139 ARG n 1 140 ILE n 1 141 VAL n 1 142 SER n 1 143 GLY n 1 144 SER n 1 145 ASN n 1 146 GLU n 1 147 PHE n 1 148 SER n 1 149 LEU n 1 150 LYS n 1 151 ARG n 1 152 ASN n 1 153 SER n 1 154 SER n 1 155 ARG n 1 156 ILE n 1 157 PHE n 1 158 HIS n 1 159 TYR n 1 160 LEU n 1 161 SER n 1 162 GLU n 1 163 LYS n 1 164 GLU n 1 165 ILE n 1 166 GLN n 1 167 LYS n 1 168 LEU n 1 169 ALA n 1 170 PHE n 1 171 PHE n 1 172 PHE n 1 173 ASP n 1 174 CYS n 1 175 LYS n 1 176 ASP n 1 177 TYR n 1 178 SER n 1 179 LEU n 1 180 VAL n 1 181 GLY n 1 182 LEU n 1 183 LEU n 1 184 LEU n 1 185 LEU n 1 186 GLY n 1 187 TYR n 1 188 THR n 1 189 LYS n 1 190 PHE n 1 191 GLN n 1 192 LYS n 1 193 ASP n 1 194 ASP n 1 195 LEU n 1 196 VAL n 1 197 GLN n 1 198 CYS n 1 199 THR n 1 200 ALA n 1 201 CYS n 1 202 PHE n 1 203 HIS n 1 204 ARG n 1 205 ALA n 1 206 SER n 1 207 LEU n 1 208 LYS n 1 209 LYS n 1 210 LEU n 1 211 GLU n 1 212 TYR n 1 213 THR n 1 214 GLU n 1 215 PHE n 1 216 ASN n 1 217 GLY n 1 218 HIS n 1 219 ALA n 1 220 LEU n 1 221 TRP n 1 222 CYS n 1 223 ARG n 1 224 TYR n 1 225 TYR n 1 226 ASN n 1 227 LYS n 1 228 GLU n 1 229 LEU n 1 230 LEU n 1 231 PRO n 1 232 THR n 1 233 MET n 1 234 LEU n 1 235 LEU n 1 236 GLU n 1 237 LEU n 1 238 ILE n 1 239 GLY n 1 240 LYS n 1 241 GLU n 1 242 ASP n 1 243 LYS n 1 244 LEU n 1 245 ILE n 1 246 THR n 1 247 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 247 _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PML39, YML107C, YM8339.12' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PML39_YEAST _struct_ref.pdbx_db_accession Q03760 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GFRLHDLRALLKRICSIQNYTRHVLIEWDVRWVNPLTLASKGWEPYQSASQSQVPFKCCCCHAIMTIPLLKNGDDVADYT MKLNEKIWNSNIIGNHLQKCPWRENQVDLNKEYYLSSQNLIREIERIHTEIDRIVSGSNEFSLKRNSSRIFHYLSEKEIQ KLAFFFDCKDYSLVGLLLLGYTKFQKDDLVQCTACFHRASLKKLEYTEFNGHALWCRYYNKELLPTMLLELIGKEDKLIT K ; _struct_ref.pdbx_align_begin 77 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7RDN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 247 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q03760 _struct_ref_seq.db_align_beg 77 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 317 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 77 _struct_ref_seq.pdbx_auth_seq_align_end 317 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7RDN GLY A 1 ? UNP Q03760 ? ? 'expression tag' 71 1 1 7RDN PRO A 2 ? UNP Q03760 ? ? 'expression tag' 72 2 1 7RDN HIS A 3 ? UNP Q03760 ? ? 'expression tag' 73 3 1 7RDN MET A 4 ? UNP Q03760 ? ? 'expression tag' 74 4 1 7RDN ALA A 5 ? UNP Q03760 ? ? 'expression tag' 75 5 1 7RDN MET A 6 ? UNP Q03760 ? ? 'expression tag' 76 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7RDN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 8000, HEPES-HCl pH 7.7' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-08-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.282 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.282 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 67.50 _reflns.entry_id 7RDN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.49 _reflns.d_resolution_low 44.34 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18812 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.3 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 30.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.954 _reflns.pdbx_CC_star 0.988 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.49 _reflns_shell.d_res_low 2.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.16 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1837 _reflns_shell.percent_possible_all 99.67 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.889 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 11.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 97.49 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7RDN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.49 _refine.ls_d_res_low 44.34 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18812 _refine.ls_number_reflns_R_free 941 _refine.ls_number_reflns_R_work 17871 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.81 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2341 _refine.ls_R_factor_R_free 0.2625 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2327 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.2152 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3730 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.49 _refine_hist.d_res_low 44.34 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1781 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1779 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0026 ? 1820 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.4915 ? 2461 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0374 ? 272 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0036 ? 305 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.1881 ? 672 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.49 2.62 . . 138 2552 99.70 . . . 0.3639 . 0.3128 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.62 2.79 . . 134 2574 99.71 . . . 0.3414 . 0.3001 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.79 3.00 . . 122 2518 99.77 . . . 0.3673 . 0.2982 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.00 3.30 . . 142 2588 99.85 . . . 0.3581 . 0.2894 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.30 3.78 . . 134 2535 99.93 . . . 0.2438 . 0.2722 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.78 4.76 . . 134 2555 100.00 . . . 0.2214 . 0.2053 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.76 44.34 . . 137 2549 99.70 . . . 0.2451 . 0.1947 . . . . . . . . . . . # _struct.entry_id 7RDN _struct.title 'Crystal structure of S. cerevisiae pre-mRNA leakage protein 39 (Pml39)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7RDN _struct_keywords.text 'mRNA nuclear export, nuclear pore complex, nuclear basket, BIR domain, ZN ion binding, NUCLEAR PROTEIN' _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 12 ? ARG A 28 ? ASP A 82 ARG A 98 1 ? 17 HELX_P HELX_P2 AA2 ASN A 40 ? LYS A 47 ? ASN A 110 LYS A 117 1 ? 8 HELX_P HELX_P3 AA3 TYR A 85 ? ASN A 97 ? TYR A 155 ASN A 167 1 ? 13 HELX_P HELX_P4 AA4 ASP A 114 ? TYR A 119 ? ASP A 184 TYR A 189 1 ? 6 HELX_P HELX_P5 AA5 ASN A 125 ? SER A 142 ? ASN A 195 SER A 212 1 ? 18 HELX_P HELX_P6 AA6 SER A 161 ? PHE A 172 ? SER A 231 PHE A 242 1 ? 12 HELX_P HELX_P7 AA7 ASP A 176 ? LEU A 185 ? ASP A 246 LEU A 255 1 ? 10 HELX_P HELX_P8 AA8 LEU A 207 ? GLU A 211 ? LEU A 277 GLU A 281 1 ? 5 HELX_P HELX_P9 AA9 GLU A 228 ? LYS A 240 ? GLU A 298 LYS A 310 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 64 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 134 A ZN 402 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc2 metalc ? ? A CYS 67 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 137 A ZN 402 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc3 metalc ? ? A HIS 102 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 172 A ZN 402 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc4 metalc ? ? A CYS 106 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 176 A ZN 402 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc5 metalc ? ? A CYS 198 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 268 A ZN 401 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc6 metalc ? ? A CYS 201 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 271 A ZN 401 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc7 metalc ? ? A HIS 218 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 288 A ZN 401 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc8 metalc ? ? A CYS 222 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 292 A ZN 401 1_555 ? ? ? ? ? ? ? 2.323 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 49 ? PRO A 51 ? TRP A 119 PRO A 121 AA1 2 GLN A 59 ? CYS A 64 ? GLN A 129 CYS A 134 AA1 3 ILE A 70 ? PRO A 74 ? ILE A 140 PRO A 144 AA2 1 TYR A 187 ? LYS A 189 ? TYR A 257 LYS A 259 AA2 2 LEU A 195 ? CYS A 198 ? LEU A 265 CYS A 268 AA2 3 ARG A 204 ? SER A 206 ? ARG A 274 SER A 276 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 50 ? N GLU A 120 O LYS A 63 ? O LYS A 133 AA1 2 3 N PHE A 62 ? N PHE A 132 O MET A 71 ? O MET A 141 AA2 1 2 N THR A 188 ? N THR A 258 O GLN A 197 ? O GLN A 267 AA2 2 3 N VAL A 196 ? N VAL A 266 O ALA A 205 ? O ALA A 275 # _atom_sites.entry_id 7RDN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018864 _atom_sites.fract_transf_matrix[1][2] 0.010891 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021783 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005839 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 24.64596 5.25405 ? ? 2.14387 29.76375 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 71 ? ? ? A . n A 1 2 PRO 2 72 ? ? ? A . n A 1 3 HIS 3 73 ? ? ? A . n A 1 4 MET 4 74 ? ? ? A . n A 1 5 ALA 5 75 ? ? ? A . n A 1 6 MET 6 76 ? ? ? A . n A 1 7 GLY 7 77 ? ? ? A . n A 1 8 PHE 8 78 ? ? ? A . n A 1 9 ARG 9 79 79 ARG ARG A . n A 1 10 LEU 10 80 80 LEU LEU A . n A 1 11 HIS 11 81 81 HIS HIS A . n A 1 12 ASP 12 82 82 ASP ASP A . n A 1 13 LEU 13 83 83 LEU LEU A . n A 1 14 ARG 14 84 84 ARG ARG A . n A 1 15 ALA 15 85 85 ALA ALA A . n A 1 16 LEU 16 86 86 LEU LEU A . n A 1 17 LEU 17 87 87 LEU LEU A . n A 1 18 LYS 18 88 88 LYS LYS A . n A 1 19 ARG 19 89 89 ARG ARG A . n A 1 20 ILE 20 90 90 ILE ILE A . n A 1 21 CYS 21 91 91 CYS CYS A . n A 1 22 SER 22 92 92 SER SER A . n A 1 23 ILE 23 93 93 ILE ILE A . n A 1 24 GLN 24 94 94 GLN GLN A . n A 1 25 ASN 25 95 95 ASN ASN A . n A 1 26 TYR 26 96 96 TYR TYR A . n A 1 27 THR 27 97 97 THR THR A . n A 1 28 ARG 28 98 98 ARG ARG A . n A 1 29 HIS 29 99 99 HIS HIS A . n A 1 30 VAL 30 100 100 VAL VAL A . n A 1 31 LEU 31 101 101 LEU LEU A . n A 1 32 ILE 32 102 102 ILE ILE A . n A 1 33 GLU 33 103 103 GLU GLU A . n A 1 34 TRP 34 104 104 TRP TRP A . n A 1 35 ASP 35 105 105 ASP ASP A . n A 1 36 VAL 36 106 106 VAL VAL A . n A 1 37 ARG 37 107 107 ARG ARG A . n A 1 38 TRP 38 108 108 TRP TRP A . n A 1 39 VAL 39 109 109 VAL VAL A . n A 1 40 ASN 40 110 110 ASN ASN A . n A 1 41 PRO 41 111 111 PRO PRO A . n A 1 42 LEU 42 112 112 LEU LEU A . n A 1 43 THR 43 113 113 THR THR A . n A 1 44 LEU 44 114 114 LEU LEU A . n A 1 45 ALA 45 115 115 ALA ALA A . n A 1 46 SER 46 116 116 SER SER A . n A 1 47 LYS 47 117 117 LYS LYS A . n A 1 48 GLY 48 118 118 GLY GLY A . n A 1 49 TRP 49 119 119 TRP TRP A . n A 1 50 GLU 50 120 120 GLU GLU A . n A 1 51 PRO 51 121 121 PRO PRO A . n A 1 52 TYR 52 122 122 TYR TYR A . n A 1 53 GLN 53 123 123 GLN GLN A . n A 1 54 SER 54 124 124 SER SER A . n A 1 55 ALA 55 125 125 ALA ALA A . n A 1 56 SER 56 126 126 SER SER A . n A 1 57 GLN 57 127 127 GLN GLN A . n A 1 58 SER 58 128 128 SER SER A . n A 1 59 GLN 59 129 129 GLN GLN A . n A 1 60 VAL 60 130 130 VAL VAL A . n A 1 61 PRO 61 131 131 PRO PRO A . n A 1 62 PHE 62 132 132 PHE PHE A . n A 1 63 LYS 63 133 133 LYS LYS A . n A 1 64 CYS 64 134 134 CYS CYS A . n A 1 65 CYS 65 135 135 CYS CYS A . n A 1 66 CYS 66 136 136 CYS CYS A . n A 1 67 CYS 67 137 137 CYS CYS A . n A 1 68 HIS 68 138 138 HIS HIS A . n A 1 69 ALA 69 139 139 ALA ALA A . n A 1 70 ILE 70 140 140 ILE ILE A . n A 1 71 MET 71 141 141 MET MET A . n A 1 72 THR 72 142 142 THR THR A . n A 1 73 ILE 73 143 143 ILE ILE A . n A 1 74 PRO 74 144 144 PRO PRO A . n A 1 75 LEU 75 145 145 LEU LEU A . n A 1 76 LEU 76 146 146 LEU LEU A . n A 1 77 LYS 77 147 147 LYS LYS A . n A 1 78 ASN 78 148 ? ? ? A . n A 1 79 GLY 79 149 ? ? ? A . n A 1 80 ASP 80 150 ? ? ? A . n A 1 81 ASP 81 151 ? ? ? A . n A 1 82 VAL 82 152 152 VAL VAL A . n A 1 83 ALA 83 153 153 ALA ALA A . n A 1 84 ASP 84 154 154 ASP ASP A . n A 1 85 TYR 85 155 155 TYR TYR A . n A 1 86 THR 86 156 156 THR THR A . n A 1 87 MET 87 157 157 MET MET A . n A 1 88 LYS 88 158 158 LYS LYS A . n A 1 89 LEU 89 159 159 LEU LEU A . n A 1 90 ASN 90 160 160 ASN ASN A . n A 1 91 GLU 91 161 161 GLU GLU A . n A 1 92 LYS 92 162 162 LYS LYS A . n A 1 93 ILE 93 163 163 ILE ILE A . n A 1 94 TRP 94 164 164 TRP TRP A . n A 1 95 ASN 95 165 165 ASN ASN A . n A 1 96 SER 96 166 166 SER SER A . n A 1 97 ASN 97 167 167 ASN ASN A . n A 1 98 ILE 98 168 168 ILE ILE A . n A 1 99 ILE 99 169 169 ILE ILE A . n A 1 100 GLY 100 170 170 GLY GLY A . n A 1 101 ASN 101 171 171 ASN ASN A . n A 1 102 HIS 102 172 172 HIS HIS A . n A 1 103 LEU 103 173 173 LEU LEU A . n A 1 104 GLN 104 174 174 GLN GLN A . n A 1 105 LYS 105 175 175 LYS LYS A . n A 1 106 CYS 106 176 176 CYS CYS A . n A 1 107 PRO 107 177 177 PRO PRO A . n A 1 108 TRP 108 178 178 TRP TRP A . n A 1 109 ARG 109 179 179 ARG ARG A . n A 1 110 GLU 110 180 180 GLU GLU A . n A 1 111 ASN 111 181 181 ASN ASN A . n A 1 112 GLN 112 182 182 GLN GLN A . n A 1 113 VAL 113 183 183 VAL VAL A . n A 1 114 ASP 114 184 184 ASP ASP A . n A 1 115 LEU 115 185 185 LEU LEU A . n A 1 116 ASN 116 186 186 ASN ASN A . n A 1 117 LYS 117 187 187 LYS LYS A . n A 1 118 GLU 118 188 188 GLU GLU A . n A 1 119 TYR 119 189 189 TYR TYR A . n A 1 120 TYR 120 190 190 TYR TYR A . n A 1 121 LEU 121 191 191 LEU LEU A . n A 1 122 SER 122 192 192 SER SER A . n A 1 123 SER 123 193 193 SER SER A . n A 1 124 GLN 124 194 194 GLN GLN A . n A 1 125 ASN 125 195 195 ASN ASN A . n A 1 126 LEU 126 196 196 LEU LEU A . n A 1 127 ILE 127 197 197 ILE ILE A . n A 1 128 ARG 128 198 198 ARG ARG A . n A 1 129 GLU 129 199 199 GLU GLU A . n A 1 130 ILE 130 200 200 ILE ILE A . n A 1 131 GLU 131 201 201 GLU GLU A . n A 1 132 ARG 132 202 202 ARG ARG A . n A 1 133 ILE 133 203 203 ILE ILE A . n A 1 134 HIS 134 204 204 HIS HIS A . n A 1 135 THR 135 205 205 THR THR A . n A 1 136 GLU 136 206 206 GLU GLU A . n A 1 137 ILE 137 207 207 ILE ILE A . n A 1 138 ASP 138 208 208 ASP ASP A . n A 1 139 ARG 139 209 209 ARG ARG A . n A 1 140 ILE 140 210 210 ILE ILE A . n A 1 141 VAL 141 211 211 VAL VAL A . n A 1 142 SER 142 212 212 SER SER A . n A 1 143 GLY 143 213 ? ? ? A . n A 1 144 SER 144 214 ? ? ? A . n A 1 145 ASN 145 215 ? ? ? A . n A 1 146 GLU 146 216 ? ? ? A . n A 1 147 PHE 147 217 ? ? ? A . n A 1 148 SER 148 218 ? ? ? A . n A 1 149 LEU 149 219 ? ? ? A . n A 1 150 LYS 150 220 ? ? ? A . n A 1 151 ARG 151 221 ? ? ? A . n A 1 152 ASN 152 222 ? ? ? A . n A 1 153 SER 153 223 ? ? ? A . n A 1 154 SER 154 224 ? ? ? A . n A 1 155 ARG 155 225 ? ? ? A . n A 1 156 ILE 156 226 ? ? ? A . n A 1 157 PHE 157 227 227 PHE PHE A . n A 1 158 HIS 158 228 228 HIS HIS A . n A 1 159 TYR 159 229 229 TYR TYR A . n A 1 160 LEU 160 230 230 LEU LEU A . n A 1 161 SER 161 231 231 SER SER A . n A 1 162 GLU 162 232 232 GLU GLU A . n A 1 163 LYS 163 233 233 LYS LYS A . n A 1 164 GLU 164 234 234 GLU GLU A . n A 1 165 ILE 165 235 235 ILE ILE A . n A 1 166 GLN 166 236 236 GLN GLN A . n A 1 167 LYS 167 237 237 LYS LYS A . n A 1 168 LEU 168 238 238 LEU LEU A . n A 1 169 ALA 169 239 239 ALA ALA A . n A 1 170 PHE 170 240 240 PHE PHE A . n A 1 171 PHE 171 241 241 PHE PHE A . n A 1 172 PHE 172 242 242 PHE PHE A . n A 1 173 ASP 173 243 243 ASP ASP A . n A 1 174 CYS 174 244 244 CYS CYS A . n A 1 175 LYS 175 245 245 LYS LYS A . n A 1 176 ASP 176 246 246 ASP ASP A . n A 1 177 TYR 177 247 247 TYR TYR A . n A 1 178 SER 178 248 248 SER SER A . n A 1 179 LEU 179 249 249 LEU LEU A . n A 1 180 VAL 180 250 250 VAL VAL A . n A 1 181 GLY 181 251 251 GLY GLY A . n A 1 182 LEU 182 252 252 LEU LEU A . n A 1 183 LEU 183 253 253 LEU LEU A . n A 1 184 LEU 184 254 254 LEU LEU A . n A 1 185 LEU 185 255 255 LEU LEU A . n A 1 186 GLY 186 256 256 GLY GLY A . n A 1 187 TYR 187 257 257 TYR TYR A . n A 1 188 THR 188 258 258 THR THR A . n A 1 189 LYS 189 259 259 LYS LYS A . n A 1 190 PHE 190 260 260 PHE PHE A . n A 1 191 GLN 191 261 261 GLN GLN A . n A 1 192 LYS 192 262 262 LYS LYS A . n A 1 193 ASP 193 263 263 ASP ASP A . n A 1 194 ASP 194 264 264 ASP ASP A . n A 1 195 LEU 195 265 265 LEU LEU A . n A 1 196 VAL 196 266 266 VAL VAL A . n A 1 197 GLN 197 267 267 GLN GLN A . n A 1 198 CYS 198 268 268 CYS CYS A . n A 1 199 THR 199 269 269 THR THR A . n A 1 200 ALA 200 270 270 ALA ALA A . n A 1 201 CYS 201 271 271 CYS CYS A . n A 1 202 PHE 202 272 272 PHE PHE A . n A 1 203 HIS 203 273 273 HIS HIS A . n A 1 204 ARG 204 274 274 ARG ARG A . n A 1 205 ALA 205 275 275 ALA ALA A . n A 1 206 SER 206 276 276 SER SER A . n A 1 207 LEU 207 277 277 LEU LEU A . n A 1 208 LYS 208 278 278 LYS LYS A . n A 1 209 LYS 209 279 279 LYS LYS A . n A 1 210 LEU 210 280 280 LEU LEU A . n A 1 211 GLU 211 281 281 GLU GLU A . n A 1 212 TYR 212 282 282 TYR TYR A . n A 1 213 THR 213 283 283 THR THR A . n A 1 214 GLU 214 284 284 GLU GLU A . n A 1 215 PHE 215 285 285 PHE PHE A . n A 1 216 ASN 216 286 286 ASN ASN A . n A 1 217 GLY 217 287 287 GLY GLY A . n A 1 218 HIS 218 288 288 HIS HIS A . n A 1 219 ALA 219 289 289 ALA ALA A . n A 1 220 LEU 220 290 290 LEU LEU A . n A 1 221 TRP 221 291 291 TRP TRP A . n A 1 222 CYS 222 292 292 CYS CYS A . n A 1 223 ARG 223 293 293 ARG ARG A . n A 1 224 TYR 224 294 294 TYR TYR A . n A 1 225 TYR 225 295 295 TYR TYR A . n A 1 226 ASN 226 296 296 ASN ASN A . n A 1 227 LYS 227 297 297 LYS LYS A . n A 1 228 GLU 228 298 298 GLU GLU A . n A 1 229 LEU 229 299 299 LEU LEU A . n A 1 230 LEU 230 300 300 LEU LEU A . n A 1 231 PRO 231 301 301 PRO PRO A . n A 1 232 THR 232 302 302 THR THR A . n A 1 233 MET 233 303 303 MET MET A . n A 1 234 LEU 234 304 304 LEU LEU A . n A 1 235 LEU 235 305 305 LEU LEU A . n A 1 236 GLU 236 306 306 GLU GLU A . n A 1 237 LEU 237 307 307 LEU LEU A . n A 1 238 ILE 238 308 308 ILE ILE A . n A 1 239 GLY 239 309 309 GLY GLY A . n A 1 240 LYS 240 310 310 LYS LYS A . n A 1 241 GLU 241 311 311 GLU GLU A . n A 1 242 ASP 242 312 ? ? ? A . n A 1 243 LYS 243 313 ? ? ? A . n A 1 244 LEU 244 314 ? ? ? A . n A 1 245 ILE 245 315 ? ? ? A . n A 1 246 THR 246 316 ? ? ? A . n A 1 247 LYS 247 317 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 401 2 ZN ZN A . C 2 ZN 1 402 3 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 64 ? A CYS 134 ? 1_555 ZN ? C ZN . ? A ZN 402 ? 1_555 SG ? A CYS 67 ? A CYS 137 ? 1_555 131.5 ? 2 SG ? A CYS 64 ? A CYS 134 ? 1_555 ZN ? C ZN . ? A ZN 402 ? 1_555 ND1 ? A HIS 102 ? A HIS 172 ? 1_555 101.6 ? 3 SG ? A CYS 67 ? A CYS 137 ? 1_555 ZN ? C ZN . ? A ZN 402 ? 1_555 ND1 ? A HIS 102 ? A HIS 172 ? 1_555 119.0 ? 4 SG ? A CYS 64 ? A CYS 134 ? 1_555 ZN ? C ZN . ? A ZN 402 ? 1_555 SG ? A CYS 106 ? A CYS 176 ? 1_555 108.9 ? 5 SG ? A CYS 67 ? A CYS 137 ? 1_555 ZN ? C ZN . ? A ZN 402 ? 1_555 SG ? A CYS 106 ? A CYS 176 ? 1_555 90.3 ? 6 ND1 ? A HIS 102 ? A HIS 172 ? 1_555 ZN ? C ZN . ? A ZN 402 ? 1_555 SG ? A CYS 106 ? A CYS 176 ? 1_555 99.4 ? 7 SG ? A CYS 198 ? A CYS 268 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 201 ? A CYS 271 ? 1_555 106.3 ? 8 SG ? A CYS 198 ? A CYS 268 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 218 ? A HIS 288 ? 1_555 100.7 ? 9 SG ? A CYS 201 ? A CYS 271 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 218 ? A HIS 288 ? 1_555 123.4 ? 10 SG ? A CYS 198 ? A CYS 268 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 222 ? A CYS 292 ? 1_555 105.1 ? 11 SG ? A CYS 201 ? A CYS 271 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 222 ? A CYS 292 ? 1_555 114.7 ? 12 ND1 ? A HIS 218 ? A HIS 288 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 222 ? A CYS 292 ? 1_555 104.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-07-27 2 'Structure model' 1 1 2023-02-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 x-y,-y,-z+2/3 5 -x,-x+y,-z+1/3 6 y,x,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -3.36027358578 23.0210544183 48.9484844441 0.573636898414 ? -0.0549332238435 ? -0.0177473179173 ? 0.745873727457 ? -0.0712808132597 ? 0.596353231496 ? 6.71801209994 ? -2.01054803542 ? 1.62120889764 ? 6.97299543662 ? -0.510635072401 ? 6.91061305596 ? 0.0816884407807 ? 0.332517836703 ? -0.4382551297 ? -0.590718108023 ? -0.166641433743 ? -0.311262472434 ? 0.809682016293 ? 0.370969421992 ? 0.0524614867657 ? 2 'X-RAY DIFFRACTION' ? refined -2.07362639472 29.8428328679 53.3552398012 0.492661751925 ? -0.0811370790186 ? -0.00854942394017 ? 0.639999481013 ? -0.0101067124319 ? 0.432479422324 ? 5.76581294175 ? 1.42283635089 ? 1.51617359375 ? 3.17829471216 ? 0.432485091338 ? 5.30592821033 ? -0.0992115979613 ? -0.357497819221 ? 0.319399358399 ? 0.0573492829295 ? -0.23825035749 ? 0.0835706321752 ? -0.403763748687 ? 0.649970221471 ? 0.415052053768 ? 3 'X-RAY DIFFRACTION' ? refined -15.8596664327 15.6017915279 30.2528060394 1.24202401478 ? -0.0987566055339 ? 0.0351487702413 ? 1.04037693833 ? 0.044547863744 ? 0.738012632592 ? 2.77960523572 ? 0.660827343297 ? 1.97317556319 ? 4.74433380787 ? 3.86779370509 ? 4.09495821526 ? 0.32013669966 ? 0.895571764909 ? -0.038294393256 ? -1.63524878356 ? -0.456799120045 ? -0.979353434409 ? 1.03805401581 ? -0.56610606589 ? -0.239009033371 ? 4 'X-RAY DIFFRACTION' ? refined -27.9582716903 7.44169260038 36.5292434748 0.976322242427 ? -0.345458287536 ? -0.0545722828886 ? 1.14618469346 ? 0.0321422581381 ? 1.0711866295 ? 7.5307354158 ? 3.36803914692 ? 3.56647522188 ? 6.11347415338 ? 2.00655454958 ? 7.46395689551 ? 0.888983871466 ? -0.0110892294159 ? -1.33983300008 ? 0.193173918321 ? -0.957569344573 ? 1.19465723038 ? 1.56140738675 ? -0.986080343284 ? 0.0247833250877 ? 5 'X-RAY DIFFRACTION' ? refined -12.2043414727 7.11530515272 39.2898228265 1.07843750014 ? 0.0692454232463 ? -0.0439495129684 ? 0.633169096008 ? -0.133355247052 ? 0.571948137759 ? 5.32136316399 ? 1.89909874586 ? 1.73603533236 ? 6.28765546216 ? 3.50228095253 ? 5.38430896892 ? 0.505908053085 ? 0.721310349246 ? -0.859419751812 ? 0.0958577987109 ? 0.221441069863 ? -0.353946261772 ? 1.8460074277 ? 0.538315917885 ? -0.54235694742 ? 6 'X-RAY DIFFRACTION' ? refined -21.523569396 14.9491633463 44.4237621392 0.704798615256 ? -0.277349382153 ? 0.05690171879 ? 0.795235099439 ? -0.0665878106378 ? 0.597342638885 ? 6.39575133996 ? 0.166048775348 ? 1.24495675851 ? 4.82527711095 ? 2.47987838127 ? 4.59454326001 ? 0.303815169473 ? -0.279810089994 ? 0.0885430956621 ? -0.131308539644 ? -0.452431421911 ? 0.551097327787 ? 0.454463206676 ? -0.995240759834 ? 0.0193206114937 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 79 ? A 32 A 110 ? ? ;chain 'A' and (resid 79 through 110 ) ; 2 'X-RAY DIFFRACTION' 2 A 33 A 111 ? A 113 A 195 ? ? ;chain 'A' and (resid 111 through 195 ) ; 3 'X-RAY DIFFRACTION' 3 A 114 A 196 ? A 129 A 211 ? ? ;chain 'A' and (resid 196 through 211 ) ; 4 'X-RAY DIFFRACTION' 4 A 130 A 212 ? A 145 A 241 ? ? ;chain 'A' and (resid 212 through 241 ) ; 5 'X-RAY DIFFRACTION' 5 A 146 A 242 ? A 185 A 281 ? ? ;chain 'A' and (resid 242 through 281 ) ; 6 'X-RAY DIFFRACTION' 6 A 186 A 282 ? A 215 A 311 ? ? ;chain 'A' and (resid 282 through 311 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _pdbx_entry_details.entry_id 7RDN _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 108 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -92.43 _pdbx_validate_torsion.psi -60.92 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 79 ? CG ? A ARG 9 CG 2 1 Y 1 A ARG 79 ? CD ? A ARG 9 CD 3 1 Y 1 A ARG 79 ? NE ? A ARG 9 NE 4 1 Y 1 A ARG 79 ? CZ ? A ARG 9 CZ 5 1 Y 1 A ARG 79 ? NH1 ? A ARG 9 NH1 6 1 Y 1 A ARG 79 ? NH2 ? A ARG 9 NH2 7 1 Y 1 A LYS 147 ? CG ? A LYS 77 CG 8 1 Y 1 A LYS 147 ? CD ? A LYS 77 CD 9 1 Y 1 A LYS 147 ? CE ? A LYS 77 CE 10 1 Y 1 A LYS 147 ? NZ ? A LYS 77 NZ 11 1 Y 1 A SER 212 ? OG ? A SER 142 OG 12 1 Y 1 A PHE 227 ? CG ? A PHE 157 CG 13 1 Y 1 A PHE 227 ? CD1 ? A PHE 157 CD1 14 1 Y 1 A PHE 227 ? CD2 ? A PHE 157 CD2 15 1 Y 1 A PHE 227 ? CE1 ? A PHE 157 CE1 16 1 Y 1 A PHE 227 ? CE2 ? A PHE 157 CE2 17 1 Y 1 A PHE 227 ? CZ ? A PHE 157 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 71 ? A GLY 1 2 1 Y 1 A PRO 72 ? A PRO 2 3 1 Y 1 A HIS 73 ? A HIS 3 4 1 Y 1 A MET 74 ? A MET 4 5 1 Y 1 A ALA 75 ? A ALA 5 6 1 Y 1 A MET 76 ? A MET 6 7 1 Y 1 A GLY 77 ? A GLY 7 8 1 Y 1 A PHE 78 ? A PHE 8 9 1 Y 1 A ASN 148 ? A ASN 78 10 1 Y 1 A GLY 149 ? A GLY 79 11 1 Y 1 A ASP 150 ? A ASP 80 12 1 Y 1 A ASP 151 ? A ASP 81 13 1 Y 1 A GLY 213 ? A GLY 143 14 1 Y 1 A SER 214 ? A SER 144 15 1 Y 1 A ASN 215 ? A ASN 145 16 1 Y 1 A GLU 216 ? A GLU 146 17 1 Y 1 A PHE 217 ? A PHE 147 18 1 Y 1 A SER 218 ? A SER 148 19 1 Y 1 A LEU 219 ? A LEU 149 20 1 Y 1 A LYS 220 ? A LYS 150 21 1 Y 1 A ARG 221 ? A ARG 151 22 1 Y 1 A ASN 222 ? A ASN 152 23 1 Y 1 A SER 223 ? A SER 153 24 1 Y 1 A SER 224 ? A SER 154 25 1 Y 1 A ARG 225 ? A ARG 155 26 1 Y 1 A ILE 226 ? A ILE 156 27 1 Y 1 A ASP 312 ? A ASP 242 28 1 Y 1 A LYS 313 ? A LYS 243 29 1 Y 1 A LEU 314 ? A LEU 244 30 1 Y 1 A ILE 315 ? A ILE 245 31 1 Y 1 A THR 316 ? A THR 246 32 1 Y 1 A LYS 317 ? A LYS 247 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 31 2 1' _space_group.name_Hall ;P 31 2" ; _space_group.IT_number 152 _space_group.crystal_system trigonal _space_group.id 1 #