HEADER NUCLEAR PROTEIN 09-JUL-21 7RDN TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE PRE-MRNA LEAKAGE PROTEIN 39 (PML39) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA LEAKAGE PROTEIN 39; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 39 KDA PRE-MRNA LEAKAGE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: PML39, YML107C, YM8339.12; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRNA NUCLEAR EXPORT, NUCLEAR PORE COMPLEX, NUCLEAR BASKET, BIR KEYWDS 2 DOMAIN, ZN ION BINDING, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,D.H.RAMIREZ,N.PAWLAK,G.BLOBEL,B.PALANCADE,E.W.DEBLER REVDAT 2 08-FEB-23 7RDN 1 JRNL REVDAT 1 27-JUL-22 7RDN 0 JRNL AUTH H.HASHIMOTO,D.H.RAMIREZ,O.LAUTIER,N.PAWLAK,G.BLOBEL, JRNL AUTH 2 B.PALANCADE,E.W.DEBLER JRNL TITL STRUCTURE OF THE PRE-MRNA LEAKAGE 39-KDA PROTEIN REVEALS A JRNL TITL 2 SINGLE DOMAIN OF INTEGRATED ZF-C3HC AND RSM1 MODULES. JRNL REF SCI REP V. 12 17691 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 36271106 JRNL DOI 10.1038/S41598-022-22183-3 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3400 - 4.7600 1.00 2549 137 0.1947 0.2451 REMARK 3 2 4.7600 - 3.7800 1.00 2555 134 0.2053 0.2214 REMARK 3 3 3.7800 - 3.3000 1.00 2535 134 0.2722 0.2438 REMARK 3 4 3.3000 - 3.0000 1.00 2588 142 0.2894 0.3581 REMARK 3 5 3.0000 - 2.7900 1.00 2518 122 0.2982 0.3673 REMARK 3 6 2.7900 - 2.6200 1.00 2574 134 0.3001 0.3414 REMARK 3 7 2.6200 - 2.4900 1.00 2552 138 0.3128 0.3639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.373 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1820 REMARK 3 ANGLE : 0.492 2461 REMARK 3 CHIRALITY : 0.037 272 REMARK 3 PLANARITY : 0.004 305 REMARK 3 DIHEDRAL : 13.188 672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3603 23.0211 48.9485 REMARK 3 T TENSOR REMARK 3 T11: 0.5736 T22: 0.7459 REMARK 3 T33: 0.5964 T12: -0.0549 REMARK 3 T13: -0.0177 T23: -0.0713 REMARK 3 L TENSOR REMARK 3 L11: 6.7180 L22: 6.9730 REMARK 3 L33: 6.9106 L12: -2.0105 REMARK 3 L13: 1.6212 L23: -0.5106 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: 0.3325 S13: -0.4383 REMARK 3 S21: -0.5907 S22: -0.1666 S23: -0.3113 REMARK 3 S31: 0.8097 S32: 0.3710 S33: 0.0525 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0736 29.8428 53.3552 REMARK 3 T TENSOR REMARK 3 T11: 0.4927 T22: 0.6400 REMARK 3 T33: 0.4325 T12: -0.0811 REMARK 3 T13: -0.0085 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.7658 L22: 3.1783 REMARK 3 L33: 5.3059 L12: 1.4228 REMARK 3 L13: 1.5162 L23: 0.4325 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: -0.3575 S13: 0.3194 REMARK 3 S21: 0.0573 S22: -0.2383 S23: 0.0836 REMARK 3 S31: -0.4038 S32: 0.6500 S33: 0.4151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8597 15.6018 30.2528 REMARK 3 T TENSOR REMARK 3 T11: 1.2420 T22: 1.0404 REMARK 3 T33: 0.7380 T12: -0.0988 REMARK 3 T13: 0.0351 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 2.7796 L22: 4.7443 REMARK 3 L33: 4.0950 L12: 0.6608 REMARK 3 L13: 1.9732 L23: 3.8678 REMARK 3 S TENSOR REMARK 3 S11: 0.3201 S12: 0.8956 S13: -0.0383 REMARK 3 S21: -1.6352 S22: -0.4568 S23: -0.9794 REMARK 3 S31: 1.0381 S32: -0.5661 S33: -0.2390 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9583 7.4417 36.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.9763 T22: 1.1462 REMARK 3 T33: 1.0712 T12: -0.3455 REMARK 3 T13: -0.0546 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 7.5307 L22: 6.1135 REMARK 3 L33: 7.4640 L12: 3.3680 REMARK 3 L13: 3.5665 L23: 2.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.8890 S12: -0.0111 S13: -1.3398 REMARK 3 S21: 0.1932 S22: -0.9576 S23: 1.1947 REMARK 3 S31: 1.5614 S32: -0.9861 S33: 0.0248 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2043 7.1153 39.2898 REMARK 3 T TENSOR REMARK 3 T11: 1.0784 T22: 0.6332 REMARK 3 T33: 0.5719 T12: 0.0692 REMARK 3 T13: -0.0439 T23: -0.1334 REMARK 3 L TENSOR REMARK 3 L11: 5.3214 L22: 6.2877 REMARK 3 L33: 5.3843 L12: 1.8991 REMARK 3 L13: 1.7360 L23: 3.5023 REMARK 3 S TENSOR REMARK 3 S11: 0.5059 S12: 0.7213 S13: -0.8594 REMARK 3 S21: 0.0959 S22: 0.2214 S23: -0.3539 REMARK 3 S31: 1.8460 S32: 0.5383 S33: -0.5424 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5236 14.9492 44.4238 REMARK 3 T TENSOR REMARK 3 T11: 0.7048 T22: 0.7952 REMARK 3 T33: 0.5973 T12: -0.2773 REMARK 3 T13: 0.0569 T23: -0.0666 REMARK 3 L TENSOR REMARK 3 L11: 6.3958 L22: 4.8253 REMARK 3 L33: 4.5945 L12: 0.1660 REMARK 3 L13: 1.2450 L23: 2.4799 REMARK 3 S TENSOR REMARK 3 S11: 0.3038 S12: -0.2798 S13: 0.0885 REMARK 3 S21: -0.1313 S22: -0.4524 S23: 0.5511 REMARK 3 S31: 0.4545 S32: -0.9952 S33: 0.0193 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 44.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.88900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES-HCL PH 7.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.09000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.18000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.18000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.09000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 71 REMARK 465 PRO A 72 REMARK 465 HIS A 73 REMARK 465 MET A 74 REMARK 465 ALA A 75 REMARK 465 MET A 76 REMARK 465 GLY A 77 REMARK 465 PHE A 78 REMARK 465 ASN A 148 REMARK 465 GLY A 149 REMARK 465 ASP A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 ASN A 215 REMARK 465 GLU A 216 REMARK 465 PHE A 217 REMARK 465 SER A 218 REMARK 465 LEU A 219 REMARK 465 LYS A 220 REMARK 465 ARG A 221 REMARK 465 ASN A 222 REMARK 465 SER A 223 REMARK 465 SER A 224 REMARK 465 ARG A 225 REMARK 465 ILE A 226 REMARK 465 ASP A 312 REMARK 465 LYS A 313 REMARK 465 LEU A 314 REMARK 465 ILE A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 SER A 212 OG REMARK 470 PHE A 227 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 108 -60.92 -92.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 134 SG REMARK 620 2 CYS A 137 SG 131.5 REMARK 620 3 HIS A 172 ND1 101.6 119.0 REMARK 620 4 CYS A 176 SG 108.9 90.3 99.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 268 SG REMARK 620 2 CYS A 271 SG 106.3 REMARK 620 3 HIS A 288 ND1 100.7 123.4 REMARK 620 4 CYS A 292 SG 105.1 114.7 104.5 REMARK 620 N 1 2 3 DBREF 7RDN A 77 317 UNP Q03760 PML39_YEAST 77 317 SEQADV 7RDN GLY A 71 UNP Q03760 EXPRESSION TAG SEQADV 7RDN PRO A 72 UNP Q03760 EXPRESSION TAG SEQADV 7RDN HIS A 73 UNP Q03760 EXPRESSION TAG SEQADV 7RDN MET A 74 UNP Q03760 EXPRESSION TAG SEQADV 7RDN ALA A 75 UNP Q03760 EXPRESSION TAG SEQADV 7RDN MET A 76 UNP Q03760 EXPRESSION TAG SEQRES 1 A 247 GLY PRO HIS MET ALA MET GLY PHE ARG LEU HIS ASP LEU SEQRES 2 A 247 ARG ALA LEU LEU LYS ARG ILE CYS SER ILE GLN ASN TYR SEQRES 3 A 247 THR ARG HIS VAL LEU ILE GLU TRP ASP VAL ARG TRP VAL SEQRES 4 A 247 ASN PRO LEU THR LEU ALA SER LYS GLY TRP GLU PRO TYR SEQRES 5 A 247 GLN SER ALA SER GLN SER GLN VAL PRO PHE LYS CYS CYS SEQRES 6 A 247 CYS CYS HIS ALA ILE MET THR ILE PRO LEU LEU LYS ASN SEQRES 7 A 247 GLY ASP ASP VAL ALA ASP TYR THR MET LYS LEU ASN GLU SEQRES 8 A 247 LYS ILE TRP ASN SER ASN ILE ILE GLY ASN HIS LEU GLN SEQRES 9 A 247 LYS CYS PRO TRP ARG GLU ASN GLN VAL ASP LEU ASN LYS SEQRES 10 A 247 GLU TYR TYR LEU SER SER GLN ASN LEU ILE ARG GLU ILE SEQRES 11 A 247 GLU ARG ILE HIS THR GLU ILE ASP ARG ILE VAL SER GLY SEQRES 12 A 247 SER ASN GLU PHE SER LEU LYS ARG ASN SER SER ARG ILE SEQRES 13 A 247 PHE HIS TYR LEU SER GLU LYS GLU ILE GLN LYS LEU ALA SEQRES 14 A 247 PHE PHE PHE ASP CYS LYS ASP TYR SER LEU VAL GLY LEU SEQRES 15 A 247 LEU LEU LEU GLY TYR THR LYS PHE GLN LYS ASP ASP LEU SEQRES 16 A 247 VAL GLN CYS THR ALA CYS PHE HIS ARG ALA SER LEU LYS SEQRES 17 A 247 LYS LEU GLU TYR THR GLU PHE ASN GLY HIS ALA LEU TRP SEQRES 18 A 247 CYS ARG TYR TYR ASN LYS GLU LEU LEU PRO THR MET LEU SEQRES 19 A 247 LEU GLU LEU ILE GLY LYS GLU ASP LYS LEU ILE THR LYS HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 ASP A 82 ARG A 98 1 17 HELIX 2 AA2 ASN A 110 LYS A 117 1 8 HELIX 3 AA3 TYR A 155 ASN A 167 1 13 HELIX 4 AA4 ASP A 184 TYR A 189 1 6 HELIX 5 AA5 ASN A 195 SER A 212 1 18 HELIX 6 AA6 SER A 231 PHE A 242 1 12 HELIX 7 AA7 ASP A 246 LEU A 255 1 10 HELIX 8 AA8 LEU A 277 GLU A 281 1 5 HELIX 9 AA9 GLU A 298 LYS A 310 1 13 SHEET 1 AA1 3 TRP A 119 PRO A 121 0 SHEET 2 AA1 3 GLN A 129 CYS A 134 -1 O LYS A 133 N GLU A 120 SHEET 3 AA1 3 ILE A 140 PRO A 144 -1 O MET A 141 N PHE A 132 SHEET 1 AA2 3 TYR A 257 LYS A 259 0 SHEET 2 AA2 3 LEU A 265 CYS A 268 -1 O GLN A 267 N THR A 258 SHEET 3 AA2 3 ARG A 274 SER A 276 -1 O ALA A 275 N VAL A 266 LINK SG CYS A 134 ZN ZN A 402 1555 1555 2.35 LINK SG CYS A 137 ZN ZN A 402 1555 1555 2.36 LINK ND1 HIS A 172 ZN ZN A 402 1555 1555 2.17 LINK SG CYS A 176 ZN ZN A 402 1555 1555 2.60 LINK SG CYS A 268 ZN ZN A 401 1555 1555 2.49 LINK SG CYS A 271 ZN ZN A 401 1555 1555 2.33 LINK ND1 HIS A 288 ZN ZN A 401 1555 1555 2.11 LINK SG CYS A 292 ZN ZN A 401 1555 1555 2.32 CRYST1 53.010 53.010 171.270 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018864 0.010891 0.000000 0.00000 SCALE2 0.000000 0.021783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005839 0.00000