HEADER RNA 13-JUL-21 7REX TITLE PREQ1-1 (TYPE-1) RIBOSWITCH IN COMPLEX WITH TANDEM STACKED METABOLITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (34-MER); COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: CARNOBACTERIUM ANTARCTICUM; SOURCE 4 ORGANISM_TAXID: 2126436 KEYWDS PREQ1, PREQ0, QUEUOSINE, RIBOSOMAL BINDING SITE, APTAMER, METABOLITE, KEYWDS 2 SHINE-DALGARNO SEQUENCE, H-TYPE PSEUDOKNOT, RIBOSWITCH, RNA FOLDING, KEYWDS 3 GENE REGULATION, RNA-LIGAND INTERACTIONS, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.L.JENKINS,G.M.SCHROEDER,J.E.WEDEKIND REVDAT 3 18-OCT-23 7REX 1 REMARK REVDAT 2 19-JAN-22 7REX 1 JRNL REVDAT 1 29-DEC-21 7REX 0 JRNL AUTH G.M.SCHROEDER,C.E.CAVENDER,M.E.BLAU,J.L.JENKINS,D.H.MATHEWS, JRNL AUTH 2 J.E.WEDEKIND JRNL TITL A SMALL RNA THAT COOPERATIVELY SENSES TWO STACKED JRNL TITL 2 METABOLITES IN ONE POCKET FOR GENE CONTROL JRNL REF NAT COMMUN V. 13 199 2022 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-021-27790-8 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.770 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8000 - 5.9500 0.99 1323 148 0.2224 0.2606 REMARK 3 2 5.9200 - 4.7200 0.99 1316 134 0.2121 0.2477 REMARK 3 3 4.7200 - 4.1300 1.00 1293 148 0.2008 0.2465 REMARK 3 4 4.1300 - 3.7500 0.99 1345 137 0.2177 0.3139 REMARK 3 5 3.7500 - 3.4800 0.99 1308 151 0.2123 0.2767 REMARK 3 6 3.4800 - 3.2800 0.99 1310 136 0.2010 0.2152 REMARK 3 7 3.2800 - 3.1100 0.99 1318 139 0.1754 0.2151 REMARK 3 8 3.1100 - 2.9800 0.99 1297 163 0.2505 0.2629 REMARK 3 9 2.9800 - 2.8600 0.97 1287 135 0.3364 0.3545 REMARK 3 10 2.8600 - 2.7600 0.99 1313 151 0.3830 0.4181 REMARK 3 11 2.7600 - 2.6800 0.99 1335 149 0.4142 0.4095 REMARK 3 12 2.6800 - 2.6000 0.95 1251 131 0.4246 0.4283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4926 23.4751 46.0867 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.4763 REMARK 3 T33: 0.2587 T12: 0.1326 REMARK 3 T13: -0.0550 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 4.1213 L22: 4.4909 REMARK 3 L33: 3.1931 L12: 0.6571 REMARK 3 L13: -1.8076 L23: -0.4767 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: 0.0455 S13: -0.2046 REMARK 3 S21: 0.1332 S22: -0.0882 S23: -0.1985 REMARK 3 S31: 0.2713 S32: 0.2320 S33: 0.0309 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6705 17.0220 54.8086 REMARK 3 T TENSOR REMARK 3 T11: 1.2854 T22: 1.6130 REMARK 3 T33: 0.6056 T12: 0.3488 REMARK 3 T13: -0.1288 T23: 0.1829 REMARK 3 L TENSOR REMARK 3 L11: 8.0374 L22: 2.9325 REMARK 3 L33: 3.9674 L12: 1.1328 REMARK 3 L13: 4.9264 L23: -0.8782 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: 1.7673 S13: -0.6438 REMARK 3 S21: -0.8601 S22: -0.0483 S23: -0.8162 REMARK 3 S31: 0.2668 S32: 2.3257 S33: 0.0783 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3161 12.4912 46.5726 REMARK 3 T TENSOR REMARK 3 T11: 1.0717 T22: 0.6116 REMARK 3 T33: 0.7984 T12: 0.1593 REMARK 3 T13: 0.0606 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.0018 L22: 2.0246 REMARK 3 L33: 2.0076 L12: 3.6938 REMARK 3 L13: 1.9835 L23: 2.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.3629 S12: 1.0753 S13: -2.6814 REMARK 3 S21: -0.7192 S22: 0.5695 S23: -0.7439 REMARK 3 S31: 1.6451 S32: 0.6358 S33: -0.8993 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2621 27.7614 43.2040 REMARK 3 T TENSOR REMARK 3 T11: 0.4128 T22: 0.7317 REMARK 3 T33: 0.3952 T12: 0.0422 REMARK 3 T13: 0.0026 T23: 0.1622 REMARK 3 L TENSOR REMARK 3 L11: 7.8927 L22: 6.0887 REMARK 3 L33: 2.0035 L12: 3.6187 REMARK 3 L13: 2.4922 L23: 7.6905 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.4391 S13: 0.3190 REMARK 3 S21: -0.0772 S22: -0.3811 S23: 1.1523 REMARK 3 S31: 0.1487 S32: -1.1730 S33: 0.3640 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2060 21.4494 70.9121 REMARK 3 T TENSOR REMARK 3 T11: 0.8906 T22: 0.6006 REMARK 3 T33: 0.4234 T12: -0.1054 REMARK 3 T13: -0.1564 T23: 0.1380 REMARK 3 L TENSOR REMARK 3 L11: 8.0026 L22: 2.0136 REMARK 3 L33: 2.0080 L12: 1.8544 REMARK 3 L13: 7.9830 L23: -6.8404 REMARK 3 S TENSOR REMARK 3 S11: 1.0185 S12: -0.0397 S13: -0.4957 REMARK 3 S21: 0.7612 S22: -0.8385 S23: -0.0967 REMARK 3 S31: 0.9998 S32: 1.3837 S33: -0.3193 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5041 9.5836 82.5808 REMARK 3 T TENSOR REMARK 3 T11: 0.8645 T22: 0.5850 REMARK 3 T33: 0.2951 T12: -0.1997 REMARK 3 T13: -0.0559 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 4.4166 L22: 6.4768 REMARK 3 L33: 5.3326 L12: -1.0025 REMARK 3 L13: 2.0753 L23: -1.0899 REMARK 3 S TENSOR REMARK 3 S11: 0.2062 S12: -0.0673 S13: -0.2188 REMARK 3 S21: 0.0925 S22: -0.0968 S23: 0.1079 REMARK 3 S31: -0.4032 S32: 0.9346 S33: -0.1896 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0610 11.3699 69.4656 REMARK 3 T TENSOR REMARK 3 T11: 0.9790 T22: 0.4700 REMARK 3 T33: 0.2767 T12: -0.1732 REMARK 3 T13: -0.0908 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 6.3950 L22: 7.6666 REMARK 3 L33: 3.7346 L12: 0.2712 REMARK 3 L13: 0.5849 L23: 1.1806 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.6548 S13: 0.0629 REMARK 3 S21: -0.5212 S22: -0.3877 S23: 0.1579 REMARK 3 S31: 0.2861 S32: 0.0828 S33: 0.2856 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9008 27.3905 68.8015 REMARK 3 T TENSOR REMARK 3 T11: 1.4814 T22: 0.5662 REMARK 3 T33: 0.6424 T12: -0.1136 REMARK 3 T13: 0.0270 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 6.1849 L22: 2.0136 REMARK 3 L33: 2.0101 L12: 2.8690 REMARK 3 L13: 1.9892 L23: 2.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.4257 S12: -0.3948 S13: 1.4068 REMARK 3 S21: 1.4753 S22: 0.5962 S23: 0.8569 REMARK 3 S31: -2.9177 S32: 0.2494 S33: -0.9876 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8091 14.1188 76.9096 REMARK 3 T TENSOR REMARK 3 T11: 0.7330 T22: 0.7023 REMARK 3 T33: 0.5287 T12: -0.2396 REMARK 3 T13: -0.1342 T23: -0.1353 REMARK 3 L TENSOR REMARK 3 L11: 2.0024 L22: 5.6053 REMARK 3 L33: 8.3352 L12: -0.1011 REMARK 3 L13: -5.1616 L23: -1.3820 REMARK 3 S TENSOR REMARK 3 S11: 1.0049 S12: -0.4561 S13: 0.4195 REMARK 3 S21: 1.3247 S22: 0.0596 S23: 1.2433 REMARK 3 S31: -0.4202 S32: -0.1084 S33: -0.8034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5235 1.8496 77.5364 REMARK 3 T TENSOR REMARK 3 T11: 1.5511 T22: 0.5578 REMARK 3 T33: 0.2845 T12: -0.1225 REMARK 3 T13: -0.3897 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.9729 L22: 2.0032 REMARK 3 L33: 2.0056 L12: 0.0818 REMARK 3 L13: -5.3881 L23: 7.2451 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.9973 S13: -0.4994 REMARK 3 S21: 0.6912 S22: -0.5203 S23: -0.2828 REMARK 3 S31: 1.4562 S32: 0.1816 S33: 0.2540 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1560 -3.0145 67.1443 REMARK 3 T TENSOR REMARK 3 T11: 1.4953 T22: 2.3619 REMARK 3 T33: 0.2427 T12: -0.7095 REMARK 3 T13: 0.2603 T23: 0.4296 REMARK 3 L TENSOR REMARK 3 L11: 2.3568 L22: 1.7461 REMARK 3 L33: 2.0024 L12: 0.6377 REMARK 3 L13: 0.3742 L23: -2.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.4684 S12: 0.0279 S13: -0.6048 REMARK 3 S21: 0.1188 S22: 0.1408 S23: 0.1911 REMARK 3 S31: 1.8894 S32: -0.1175 S33: -0.4110 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1252 12.3363 53.5660 REMARK 3 T TENSOR REMARK 3 T11: 2.0369 T22: 1.7221 REMARK 3 T33: 1.7411 T12: 0.8448 REMARK 3 T13: 0.9487 T23: 0.8275 REMARK 3 L TENSOR REMARK 3 L11: 6.2793 L22: 1.7843 REMARK 3 L33: 3.5486 L12: 3.1231 REMARK 3 L13: -3.9741 L23: -1.4931 REMARK 3 S TENSOR REMARK 3 S11: 0.2448 S12: 0.3255 S13: 0.9026 REMARK 3 S21: -0.1719 S22: 0.4366 S23: 0.4222 REMARK 3 S31: -1.2598 S32: -0.9774 S33: -0.7216 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9411 3.8965 62.7352 REMARK 3 T TENSOR REMARK 3 T11: 0.8371 T22: 1.0324 REMARK 3 T33: 0.6190 T12: 0.1584 REMARK 3 T13: 0.2709 T23: 0.1954 REMARK 3 L TENSOR REMARK 3 L11: 4.8376 L22: 3.9831 REMARK 3 L33: 0.9265 L12: -1.5565 REMARK 3 L13: -0.0029 L23: -0.7475 REMARK 3 S TENSOR REMARK 3 S11: 0.7073 S12: 0.8178 S13: 0.8288 REMARK 3 S21: -0.2103 S22: 0.5601 S23: 0.6091 REMARK 3 S31: -1.0594 S32: -1.3038 S33: -1.3863 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7556 7.1766 67.0966 REMARK 3 T TENSOR REMARK 3 T11: 1.1119 T22: 3.0029 REMARK 3 T33: 1.0644 T12: 0.6389 REMARK 3 T13: 0.5297 T23: 0.6517 REMARK 3 L TENSOR REMARK 3 L11: 2.3553 L22: 1.8894 REMARK 3 L33: 2.1190 L12: -1.6957 REMARK 3 L13: -0.3152 L23: 1.4022 REMARK 3 S TENSOR REMARK 3 S11: -0.3142 S12: 1.0613 S13: 0.1425 REMARK 3 S21: -0.1490 S22: -0.4707 S23: 0.7064 REMARK 3 S31: 0.0038 S32: -1.2918 S33: 0.4372 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 30 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0285 11.0310 59.8128 REMARK 3 T TENSOR REMARK 3 T11: 1.6469 T22: 0.7725 REMARK 3 T33: 1.2749 T12: 0.1075 REMARK 3 T13: 0.7089 T23: 0.2371 REMARK 3 L TENSOR REMARK 3 L11: 4.7306 L22: 2.0127 REMARK 3 L33: 6.2438 L12: -4.9120 REMARK 3 L13: 4.4549 L23: -0.6865 REMARK 3 S TENSOR REMARK 3 S11: 0.1658 S12: 0.1914 S13: 1.8500 REMARK 3 S21: 1.6109 S22: 0.7794 S23: 0.8841 REMARK 3 S31: -2.9074 S32: -0.5240 S33: -0.9615 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 22 OR REMARK 3 (RESID 27 AND (NAME O5 OR NAME C5 OR NAME REMARK 3 C4 OR NAME O4 OR NAME C3 OR NAME O3 OR REMARK 3 NAME C2 OR NAME O2 OR NAME C1 OR NAME N9 REMARK 3 OR NAME C8 OR NAME N7 OR NAME C5 OR NAME REMARK 3 C6 OR NAME N6 OR NAME N1 OR NAME C2 OR REMARK 3 NAME N3 OR NAME C4 )) OR RESID 28 THROUGH REMARK 3 33 OR RESID 36 THROUGH 37)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 22 OR REMARK 3 (RESID 27 AND (NAME O5 OR NAME C5 OR NAME REMARK 3 C4 OR NAME O4 OR NAME C3 OR NAME O3 OR REMARK 3 NAME C2 OR NAME O2 OR NAME C1 OR NAME N9 REMARK 3 OR NAME C8 OR NAME N7 OR NAME C5 OR NAME REMARK 3 C6 OR NAME N6 OR NAME N1 OR NAME C2 OR REMARK 3 NAME N3 OR NAME C4 )) OR RESID 28 THROUGH REMARK 3 33 OR RESID 36 THROUGH 37)) REMARK 3 ATOM PAIRS NUMBER : 526 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 22 OR REMARK 3 (RESID 27 AND (NAME O5 OR NAME C5 OR NAME REMARK 3 C4 OR NAME O4 OR NAME C3 OR NAME O3 OR REMARK 3 NAME C2 OR NAME O2 OR NAME C1 OR NAME N9 REMARK 3 OR NAME C8 OR NAME N7 OR NAME C5 OR NAME REMARK 3 C6 OR NAME N6 OR NAME N1 OR NAME C2 OR REMARK 3 NAME N3 OR NAME C4 )) OR RESID 28 THROUGH REMARK 3 33 OR RESID 36 THROUGH 37)) REMARK 3 SELECTION : (CHAIN C AND (RESID 1 THROUGH 33 OR RESID REMARK 3 36 THROUGH 37)) REMARK 3 ATOM PAIRS NUMBER : 526 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7REX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000248030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : RH COATED COLLIMATING MIRRORS, K REMARK 200 -B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 15, 2019 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.83 REMARK 200 STARTING MODEL: 3FU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M KCL, 0.012 M NACL, 30% MPD, REMARK 280 0.04 M NACACODYLATE PH 5.5, 0.002 M HEXAMINE COBALT (III) REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.42333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.21167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.21167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.42333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B 34 REMARK 465 U C 23 REMARK 465 A C 24 REMARK 465 A C 25 REMARK 465 A C 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A C 27 P OP1 OP2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 12 OP1 REMARK 620 2 C A 13 OP1 72.7 REMARK 620 3 HOH A 201 O 69.4 73.3 REMARK 620 4 A B 12 OP1 94.6 25.8 67.9 REMARK 620 5 C B 13 OP1 96.2 26.8 69.2 1.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C C 19 O3' REMARK 620 2 A C 20 OP1 54.7 REMARK 620 3 A C 20 OP2 51.6 53.8 REMARK 620 N 1 2 DBREF 7REX A 1 34 PDB 7REX 7REX 1 34 DBREF 7REX B 1 34 PDB 7REX 7REX 1 34 DBREF 7REX C 1 34 PDB 7REX 7REX 1 34 SEQRES 1 A 34 U G U G G U U C G C A A C SEQRES 2 A 34 C A U C C C A C A U A A A SEQRES 3 A 34 A A A A C U A G SEQRES 1 B 34 U G U G G U U C G C A A C SEQRES 2 B 34 C A U C C C A C A U A A A SEQRES 3 B 34 A A A A C U A G SEQRES 1 C 34 U G U G G U U C G C A A C SEQRES 2 C 34 C A U C C C A C A U A A A SEQRES 3 C 34 A A A A C U A G HET PRF A 101 22 HET PRF A 102 22 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET PRF B 101 22 HET PRF B 102 22 HET PRF C 101 22 HET PRF C 102 22 HET MG C 103 1 HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE HETNAM MG MAGNESIUM ION FORMUL 4 PRF 6(C7 H9 N5 O) FORMUL 6 MG 4(MG 2+) FORMUL 14 HOH *(H2 O) LINK OP1 A A 12 MG MG A 103 1555 1555 2.28 LINK OP1 C A 13 MG MG A 103 1555 1555 2.27 LINK MG MG A 103 O HOH A 201 1555 1555 1.96 LINK MG MG A 103 OP1 A B 12 3665 1555 2.14 LINK MG MG A 103 OP1 C B 13 3665 1555 2.46 LINK O3' C C 19 MG MG C 103 1555 1555 2.77 LINK OP1 A C 20 MG MG C 103 1555 1555 2.65 LINK OP2 A C 20 MG MG C 103 1555 1555 2.99 CRYST1 57.797 57.797 153.635 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017302 0.009989 0.000000 0.00000 SCALE2 0.000000 0.019979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006509 0.00000