HEADER VIRAL PROTEIN 14-JUL-21 7RFV TITLE TAILSPIKE PROTEIN 4 (TSP4) FROM PHAGE CBA120, RESIDUES 1-250, OBTAINED TITLE 2 IN THE PRESENCE OF PEG8000 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT (UNP RESIDUES 1-250); COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FULL-LENGTH PROTEIN DEGRADED DURING CRYSTAL GROWTH, COMPND 7 EXACT CLEAVAGE SITE UNKNOWN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA VIRUS CBA120; SOURCE 3 ORGANISM_TAXID: 1987159; SOURCE 4 GENE: ORF213; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TAILSPIKE PROTEIN-PROTEIN INTERACTION, TSP4 ATTACHMENT TO THE TAIL KEYWDS 2 BASEPLATE, TRIPLE BETA-HELIX, BETA JELLYROLL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.CHAO,X.SHANG,J.GRENFIELD,S.B.LINDEN,D.C.NELSON,O.HERZBERG REVDAT 2 18-OCT-23 7RFV 1 REMARK REVDAT 1 23-FEB-22 7RFV 0 JRNL AUTH K.L.CHAO,X.SHANG,J.GREENFIELD,S.B.LINDEN,A.B.ALREJA, JRNL AUTH 2 D.C.NELSON,O.HERZBERG JRNL TITL STRUCTURE OF ESCHERICHIA COLI O157:H7 BACTERIOPHAGE CBA120 JRNL TITL 2 TAILSPIKE PROTEIN 4 BASEPLATE ANCHOR AND TAILSPIKE ASSEMBLY JRNL TITL 3 DOMAINS (TSP4-N). JRNL REF SCI REP V. 12 2061 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 35136138 JRNL DOI 10.1038/S41598-022-06073-2 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 5125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 208 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.4800 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 138.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 151.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.575 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.640 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1810 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1560 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2487 ; 1.484 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3642 ; 1.181 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 239 ; 8.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;37.447 ;24.583 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;22.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;16.066 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2060 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 344 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7RFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7REJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG8000, 0.2 M SODIUM REMARK 280 CHLORIDE, 0.1 M CHAPS, PH 10.5, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 42.34150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 24.44588 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 75.02433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 42.34150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 24.44588 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 75.02433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 42.34150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 24.44588 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.02433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 42.34150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 24.44588 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.02433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 42.34150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 24.44588 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.02433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 42.34150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 24.44588 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.02433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.89175 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 150.04867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 48.89175 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 150.04867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 48.89175 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 150.04867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 48.89175 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 150.04867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 48.89175 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 150.04867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 48.89175 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 150.04867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -84.68300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -42.34150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -73.33763 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 181 REMARK 465 GLN A 182 REMARK 465 GLY A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 TYR A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 LEU A 73 CG CD1 CD2 REMARK 470 LEU A 75 CG CD1 CD2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 PHE A 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 11 -55.69 -29.23 REMARK 500 LEU A 14 -170.80 -174.76 REMARK 500 LYS A 23 46.55 -98.11 REMARK 500 PHE A 25 178.71 173.33 REMARK 500 GLU A 43 83.24 -68.99 REMARK 500 PRO A 51 159.77 -48.52 REMARK 500 SER A 52 -18.17 69.43 REMARK 500 ASP A 59 -54.30 -121.64 REMARK 500 GLU A 68 -74.05 -58.74 REMARK 500 THR A 116 -79.36 -95.23 REMARK 500 ASP A 120 116.64 -33.63 REMARK 500 ASP A 126 80.96 -69.37 REMARK 500 SER A 141 -157.02 65.73 REMARK 500 ASP A 151 173.25 -58.16 REMARK 500 ASN A 158 -5.52 98.02 REMARK 500 VAL A 178 111.65 -160.62 REMARK 500 LEU A 195 107.60 -40.85 REMARK 500 ASP A 216 -134.45 50.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RFV A 1 250 UNP G3M192 G3M192_9CAUD 1 250 SEQRES 1 A 250 MET ALA ASN LYS PRO THR GLN PRO LEU PHE PRO LEU GLY SEQRES 2 A 250 LEU GLU THR SER GLU SER SER ASN ILE LYS GLY PHE ASN SEQRES 3 A 250 ASN SER GLY THR ILE GLU HIS SER PRO GLY ALA VAL MET SEQRES 4 A 250 THR PHE PRO GLU ASP THR GLU VAL THR GLY LEU PRO SER SEQRES 5 A 250 SER VAL ARG TYR ASN PRO ASP SER ASP GLU PHE GLU GLY SEQRES 6 A 250 TYR TYR GLU ASN GLY GLY TRP LEU SER LEU GLY GLY GLY SEQRES 7 A 250 GLY ILE ARG TRP GLU THR LEU PRO HIS ALA PRO SER SER SEQRES 8 A 250 ASN LEU LEU GLU GLY ARG GLY TYR LEU ILE ASN ASN THR SEQRES 9 A 250 THR GLY THR SER THR VAL VAL LEU PRO SER PRO THR ARG SEQRES 10 A 250 ILE GLY ASP SER VAL THR ILE CYS ASP ALA TYR GLY LYS SEQRES 11 A 250 PHE ALA THR TYR PRO LEU THR VAL SER PRO SER GLY ASN SEQRES 12 A 250 ASN LEU TYR GLY SER THR GLU ASP MET ALA ILE THR THR SEQRES 13 A 250 ASP ASN VAL SER ALA THR PHE THR TRP SER GLY PRO GLU SEQRES 14 A 250 GLN GLY TRP VAL ILE THR SER GLY VAL GLY LEU GLY GLN SEQRES 15 A 250 GLY ARG VAL TYR SER ARG GLU ILE PHE THR GLN ILE LEU SEQRES 16 A 250 ALA SER GLU THR SER ALA VAL THR LEU ASN THR PRO PRO SEQRES 17 A 250 THR ILE VAL ASP VAL TYR ALA ASP GLY LYS ARG LEU ALA SEQRES 18 A 250 GLU SER LYS TYR SER LEU ASP GLY ASN VAL ILE THR PHE SEQRES 19 A 250 SER PRO SER LEU PRO ALA SER THR GLU LEU GLN VAL ILE SEQRES 20 A 250 GLU TYR THR SHEET 1 AA1 3 VAL A 54 ARG A 55 0 SHEET 2 AA1 3 GLU A 64 TYR A 67 -1 O GLU A 64 N ARG A 55 SHEET 3 AA1 3 GLY A 71 SER A 74 -1 O GLY A 71 N TYR A 67 SHEET 1 AA2 5 ARG A 81 LEU A 85 0 SHEET 2 AA2 5 ARG A 97 ILE A 101 1 O GLY A 98 N ARG A 81 SHEET 3 AA2 5 SER A 121 ASP A 126 1 O THR A 123 N TYR A 99 SHEET 4 AA2 5 SER A 160 TRP A 165 -1 O PHE A 163 N VAL A 122 SHEET 5 AA2 5 TRP A 172 VAL A 178 -1 O SER A 176 N THR A 162 SHEET 1 AA3 4 SER A 90 ASN A 92 0 SHEET 2 AA3 4 THR A 109 VAL A 111 1 O VAL A 111 N SER A 91 SHEET 3 AA3 4 LEU A 136 SER A 139 1 O SER A 139 N VAL A 110 SHEET 4 AA3 4 MET A 152 ILE A 154 -1 O MET A 152 N VAL A 138 SHEET 1 AA4 4 ARG A 188 ILE A 194 0 SHEET 2 AA4 4 GLU A 243 TYR A 249 -1 O VAL A 246 N PHE A 191 SHEET 3 AA4 4 ILE A 210 ALA A 215 -1 N TYR A 214 O GLN A 245 SHEET 4 AA4 4 LYS A 218 ARG A 219 -1 O LYS A 218 N ALA A 215 SHEET 1 AA5 3 ALA A 201 THR A 203 0 SHEET 2 AA5 3 VAL A 231 PHE A 234 -1 O ILE A 232 N VAL A 202 SHEET 3 AA5 3 TYR A 225 ASP A 228 -1 N ASP A 228 O VAL A 231 CISPEP 1 SER A 235 PRO A 236 0 1.28 CRYST1 84.683 84.683 225.073 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011809 0.006818 0.000000 0.00000 SCALE2 0.000000 0.013636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004443 0.00000