HEADER VIRAL PROTEIN/INHIBITOR 17-JUL-21 7RHN TITLE CO-CRYSTAL STRUCTURE OF Q67H MUTANT OF DISULFIDE STABILIZED HIV-1 CA TITLE 2 HEXAMER AND LENACAPAVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: CA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, VIRAL PROTEIN, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BESTER,M.KVARATSKHELIA REVDAT 4 18-OCT-23 7RHN 1 REMARK REVDAT 3 09-NOV-22 7RHN 1 JRNL HETSYN REVDAT 2 19-OCT-22 7RHN 1 JRNL REVDAT 1 27-JUL-22 7RHN 0 JRNL AUTH S.M.BESTER,D.ADU-AMPRATWUM,A.S.ANNAMALAI,G.WEI,L.BRIGANTI, JRNL AUTH 2 B.C.MURPHY,R.HANEY,J.R.FUCHS,M.KVARATSKHELIA JRNL TITL STRUCTURAL AND MECHANISTIC BASES OF VIRAL RESISTANCE TO JRNL TITL 2 HIV-1 CAPSID INHIBITOR LENACAPAVIR. JRNL REF MBIO V. 13 80422 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36190128 JRNL DOI 10.1128/MBIO.01804-22 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4800 - 3.5500 1.00 3055 153 0.2184 0.2788 REMARK 3 2 3.5500 - 2.8200 1.00 2986 159 0.2515 0.2883 REMARK 3 3 2.8200 - 2.4600 1.00 2984 146 0.3004 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.938 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1797 REMARK 3 ANGLE : 0.690 2480 REMARK 3 CHIRALITY : 0.041 261 REMARK 3 PLANARITY : 0.005 301 REMARK 3 DIHEDRAL : 18.086 656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3721 -3.1690 -34.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.5822 T22: 0.6040 REMARK 3 T33: 0.4708 T12: -0.0061 REMARK 3 T13: -0.1250 T23: -0.1689 REMARK 3 L TENSOR REMARK 3 L11: 1.7834 L22: 1.9259 REMARK 3 L33: 2.3959 L12: -0.8904 REMARK 3 L13: 1.1954 L23: -2.1163 REMARK 3 S TENSOR REMARK 3 S11: -0.3050 S12: 0.0254 S13: -0.6906 REMARK 3 S21: -0.9494 S22: -0.3325 S23: 0.6342 REMARK 3 S31: -0.9468 S32: -1.3687 S33: 0.4768 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8674 -8.9362 -15.0126 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.2833 REMARK 3 T33: 0.2618 T12: 0.0034 REMARK 3 T13: 0.0083 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.0677 L22: 2.7667 REMARK 3 L33: 2.6932 L12: 0.8008 REMARK 3 L13: -0.0907 L23: -0.9865 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: -0.1274 S13: -0.1039 REMARK 3 S21: 0.1782 S22: -0.1728 S23: -0.0424 REMARK 3 S31: 0.1354 S32: -0.1722 S33: 0.1933 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7931 -8.4221 -18.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.3099 REMARK 3 T33: 0.3093 T12: -0.0036 REMARK 3 T13: -0.0295 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.9296 L22: 1.5170 REMARK 3 L33: 2.7885 L12: -0.3910 REMARK 3 L13: -0.5236 L23: 0.1067 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.0920 S13: 0.2329 REMARK 3 S21: -0.1418 S22: -0.0301 S23: -0.3518 REMARK 3 S31: -0.0747 S32: 0.0616 S33: -0.0435 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 84 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0386 -4.6746 -35.7789 REMARK 3 T TENSOR REMARK 3 T11: 0.3771 T22: 0.6988 REMARK 3 T33: 0.3178 T12: 0.0580 REMARK 3 T13: 0.0470 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 0.4426 L22: 2.1168 REMARK 3 L33: 3.2798 L12: 0.4499 REMARK 3 L13: 0.2052 L23: -1.3432 REMARK 3 S TENSOR REMARK 3 S11: 0.2276 S12: 0.5675 S13: 0.3661 REMARK 3 S21: -0.3593 S22: -0.2604 S23: -0.0774 REMARK 3 S31: -0.0796 S32: 1.4199 S33: 0.0121 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 111 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1890 -6.0389 -37.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.4667 T22: 0.4329 REMARK 3 T33: 0.3412 T12: 0.0169 REMARK 3 T13: 0.0094 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.2350 L22: 5.0998 REMARK 3 L33: 7.6490 L12: -0.2896 REMARK 3 L13: 1.9186 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.3067 S12: 1.5691 S13: 0.1776 REMARK 3 S21: -0.8632 S22: 0.1527 S23: 0.0095 REMARK 3 S31: 0.5038 S32: 0.2495 S33: -0.3610 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 126 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9229 -15.1579 -19.2881 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.2725 REMARK 3 T33: 0.3054 T12: 0.0120 REMARK 3 T13: 0.0549 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 3.3764 L22: 5.2534 REMARK 3 L33: 3.9974 L12: 0.7414 REMARK 3 L13: -1.8396 L23: -3.8088 REMARK 3 S TENSOR REMARK 3 S11: -0.4253 S12: -0.2238 S13: -0.0010 REMARK 3 S21: -0.7455 S22: -0.6238 S23: -0.0341 REMARK 3 S31: 0.8691 S32: 0.8490 S33: 0.8214 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 145 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7001 -28.7030 3.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.3739 T22: 0.3780 REMARK 3 T33: 0.2268 T12: -0.0191 REMARK 3 T13: -0.0272 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.8056 L22: 2.7031 REMARK 3 L33: 1.7275 L12: 0.9354 REMARK 3 L13: 0.1769 L23: -0.9072 REMARK 3 S TENSOR REMARK 3 S11: -0.2060 S12: -0.0611 S13: 0.3202 REMARK 3 S21: 0.3275 S22: 0.2618 S23: 0.1179 REMARK 3 S31: -0.0828 S32: -0.1593 S33: 0.0839 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 161 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7571 -28.6892 -2.9884 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.2755 REMARK 3 T33: 0.2673 T12: 0.0620 REMARK 3 T13: 0.0051 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 8.8591 L22: 6.1270 REMARK 3 L33: 7.2484 L12: 0.8422 REMARK 3 L13: 0.3681 L23: -2.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.3149 S12: -0.6646 S13: 0.8648 REMARK 3 S21: 0.2766 S22: 0.2602 S23: -0.0268 REMARK 3 S31: 0.0933 S32: -0.6757 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 176 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4172 -37.1310 -2.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.3162 T22: 0.3381 REMARK 3 T33: 0.4358 T12: 0.0743 REMARK 3 T13: -0.0054 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 6.2952 L22: 5.1200 REMARK 3 L33: 5.3894 L12: 5.0841 REMARK 3 L13: -3.1122 L23: -4.1882 REMARK 3 S TENSOR REMARK 3 S11: -0.2665 S12: 0.0949 S13: -1.1569 REMARK 3 S21: -0.2458 S22: 0.0069 S23: -0.8065 REMARK 3 S31: 1.1167 S32: 0.7564 S33: 0.3456 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 196 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9412 -42.4970 -1.6009 REMARK 3 T TENSOR REMARK 3 T11: 0.4818 T22: 0.2857 REMARK 3 T33: 0.4347 T12: -0.0209 REMARK 3 T13: 0.0149 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 3.3718 L22: 3.3772 REMARK 3 L33: 3.3201 L12: 1.3154 REMARK 3 L13: 3.0388 L23: 0.5079 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: -0.3919 S13: -0.3270 REMARK 3 S21: -0.3136 S22: -0.4701 S23: -0.2526 REMARK 3 S31: 0.8591 S32: -0.5061 S33: 0.5042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 45.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.35M NAI, 4% PEG 3350, 6% GLYCEROL, REMARK 280 0.1M SODIUM CACODYLATE TRIHYDRATE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -399.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 414 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS C 87 REMARK 465 ALA C 88 REMARK 465 GLY C 89 REMARK 465 ALA C 177 REMARK 465 SER C 178 REMARK 465 GLN C 179 REMARK 465 GLU C 180 REMARK 465 VAL C 181 REMARK 465 LYS C 182 REMARK 465 ASN C 183 REMARK 465 ALA C 184 REMARK 465 ALA C 185 REMARK 465 GLY C 220 REMARK 465 VAL C 221 REMARK 465 GLY C 222 REMARK 465 GLY C 223 REMARK 465 PRO C 224 REMARK 465 GLY C 225 REMARK 465 HIS C 226 REMARK 465 LYS C 227 REMARK 465 ALA C 228 REMARK 465 ARG C 229 REMARK 465 VAL C 230 REMARK 465 LEU C 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 9 CG CD OE1 NE2 REMARK 470 ARG C 18 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 5 -164.84 -68.90 REMARK 500 ALA C 31 -115.10 53.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 447 DISTANCE = 6.90 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RAO RELATED DB: PDB REMARK 900 RELATED ID: 7RAR RELATED DB: PDB REMARK 900 RELATED ID: 7RHM RELATED DB: PDB DBREF 7RHN C 1 231 UNP P12493 GAG_HV1N5 133 363 SEQADV 7RHN CYS C 14 UNP P12493 ALA 146 CONFLICT SEQADV 7RHN CYS C 45 UNP P12493 GLU 177 CONFLICT SEQADV 7RHN HIS C 67 UNP P12493 GLN 199 ENGINEERED MUTATION SEQADV 7RHN ALA C 184 UNP P12493 TRP 316 CONFLICT SEQADV 7RHN ALA C 185 UNP P12493 MET 317 CONFLICT SEQRES 1 C 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 C 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 C 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 C 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 C 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 C 231 MET HIS MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 C 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 C 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 C 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 C 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 C 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 C 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 C 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 C 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 C 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 C 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 C 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 C 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET QNG C 301 128 HET IOD C 302 1 HET IOD C 303 1 HET IOD C 304 1 HET CL C 305 1 HET CL C 306 1 HET CL C 307 1 HET CL C 308 1 HETNAM QNG N-[(1S)-1-(3-{4-CHLORO-3-[(METHYLSULFONYL)AMINO]-1-(2, HETNAM 2 QNG 2,2-TRIFLUOROETHYL)-1H-INDAZOL-7-YL}-6-[3-METHYL-3- HETNAM 3 QNG (METHYLSULFONYL)BUT-1-YN-1-YL]PYRIDIN-2-YL)-2-(3,5- HETNAM 4 QNG DIFLUOROPHENYL)ETHYL]-2-[(3BS,4AR)-5,5-DIFLUORO-3- HETNAM 5 QNG (TRIFLUOROMETHYL)-3B,4,4A,5-TETRAHYDRO-1H- HETNAM 6 QNG CYCLOPROPA[3,4]CYCLOPENTA[1,2-C]PYRAZOL-1-YL]ACETAMIDE HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION HETSYN QNG LENACAPAVIR FORMUL 2 QNG C39 H32 CL F10 N7 O5 S2 FORMUL 3 IOD 3(I 1-) FORMUL 6 CL 4(CL 1-) FORMUL 10 HOH *47(H2 O) HELIX 1 AA1 SER C 16 ALA C 31 1 16 HELIX 2 AA2 GLU C 35 SER C 44 1 10 HELIX 3 AA3 THR C 48 VAL C 59 1 12 HELIX 4 AA4 HIS C 62 HIS C 84 1 23 HELIX 5 AA5 ARG C 100 ALA C 105 1 6 HELIX 6 AA6 THR C 110 THR C 119 1 10 HELIX 7 AA7 PRO C 125 TYR C 145 1 21 HELIX 8 AA8 SER C 149 ILE C 153 5 5 HELIX 9 AA9 PRO C 160 GLN C 176 1 17 HELIX 10 AB1 GLU C 187 ASN C 193 1 7 HELIX 11 AB2 ASN C 195 GLY C 206 1 12 HELIX 12 AB3 THR C 210 CYS C 218 1 9 SHEET 1 AA1 2 ILE C 2 GLN C 4 0 SHEET 2 AA1 2 MET C 10 HIS C 12 -1 O VAL C 11 N VAL C 3 SSBOND 1 CYS C 14 CYS C 45 1555 6555 2.03 SSBOND 2 CYS C 198 CYS C 218 1555 1555 2.03 CISPEP 1 ASN C 121 PRO C 122 0 -1.80 CRYST1 89.730 89.730 56.092 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011145 0.006434 0.000000 0.00000 SCALE2 0.000000 0.012869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017828 0.00000