HEADER MOTOR PROTEIN 20-JUL-21 7RIK TITLE MAGIC-ANGLE-SPINNING NMR STRUCTURE OF KINESIN-1 MOTOR DOMAIN ASSEMBLED TITLE 2 WITH MICROTUBULES COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-1 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINESIN MOTOR DOMAIN RESIDUES 1-349; COMPND 5 SYNONYM: CONVENTIONAL KINESIN HEAVY CHAIN,UBIQUITOUS KINESIN HEAVY COMPND 6 CHAIN,UKHC; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF5B, KNS, KNS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINESIN-1 MOTOR DOMAIN, KIF5B, MICROTUBULES, MTS, INTEGRATED KEYWDS 2 STRUCTURAL BIOLOGY, MOTOR PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 22 AUTHOR C.ZHANG,C.GUO,R.W.RUSSELL,C.M.QUINN,M.LI,J.C.WILLIAMS,A.M.GRONENBORN, AUTHOR 2 T.POLENOVA REVDAT 2 15-MAY-24 7RIK 1 REMARK REVDAT 1 23-NOV-22 7RIK 0 JRNL AUTH C.ZHANG,C.GUO,R.W.RUSSELL,C.M.QUINN,M.LI,J.C.WILLIAMS, JRNL AUTH 2 A.M.GRONENBORN,T.POLENOVA JRNL TITL MAGIC-ANGLE-SPINNING NMR STRUCTURE OF THE KINESIN-1 MOTOR JRNL TITL 2 DOMAIN ASSEMBLED WITH MICROTUBULES REVEALS THE ELUSIVE NECK JRNL TITL 3 LINKER ORIENTATION JRNL REF NAT COMMUN V. 13 6795 2022 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-022-34026-W REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS REMARK 4 REMARK 4 7RIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000255430. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 9.1 % W/W [U-100% 13C; U-100% REMARK 210 15N] APO-KIF5B, 16.4 % W/W REMARK 210 PORCINE-ALPHA-TUBULIN, 16.4 % W/ REMARK 210 W PORCINE-BETA-TUBULIN, 5 UM REMARK 210 TAXOL, 1 MM GUANOSINE-5'- REMARK 210 TRIPHOSPHATE, 1 MM GUANOSINE-5'- REMARK 210 DIPHOSPHATE, 58.1 % W/W BUFFER, REMARK 210 100% H2O; 8.2 % W/W [1,6-13C- REMARK 210 GLUCOSE; U-100% 15N] APO-KIF5B, REMARK 210 16.4 % W/W PORCINE-ALPHA-TUBULIN, REMARK 210 16.4 % W/W PORCINE-BETA-TUBULIN, REMARK 210 5 UM TAXOL, 1 MM GUANOSINE-5'- REMARK 210 TRIPHOSPHATE, 1 MM GUANOSINE-5'- REMARK 210 DIPHOSPHATE, 59 % W/W BUFFER, REMARK 210 100% H2O; 7.6 % W/W [2-13C- REMARK 210 GLUCOSE; U-100% 15N] APO-KIF5B, REMARK 210 16.4 % W/W PORCINE-ALPHA-TUBULIN, REMARK 210 16.4 % W/W PORCINE-BETA-TUBULIN, REMARK 210 5 UM TAXOL, 1 MM GUANOSINE-5'- REMARK 210 TRIPHOSPHATE, 1 MM GUANOSINE-5'- REMARK 210 DIPHOSPHATE, 59.6 % W/W BUFFER, REMARK 210 100% H2O; 9.1 % W/W [U-100% 13C; REMARK 210 U-100% 15N] APO-KIF5B, 16.4 % W/ REMARK 210 W PORCINE-ALPHA-TUBULIN, 16.4 % REMARK 210 W/W PORCINE-BETA-TUBULIN, 5 UM REMARK 210 TAXOL, 1 MM GUANOSINE-5'- REMARK 210 TRIPHOSPHATE, 1 MM GUANOSINE-5'- REMARK 210 DIPHOSPHATE, 58.1 % W/W BUFFER, REMARK 210 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 13C-DETECTED CORD; 2D NCACX; REMARK 210 3D NCACX; 3D NCOCX REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, TALOS-N, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 11 88.99 34.05 REMARK 500 1 GLU A 20 -71.06 69.47 REMARK 500 1 ALA A 31 110.31 -168.52 REMARK 500 1 PHE A 33 176.06 161.77 REMARK 500 1 ASP A 37 -95.11 41.20 REMARK 500 1 ALA A 42 157.71 -46.08 REMARK 500 1 SER A 43 -11.80 -45.56 REMARK 500 1 GLN A 53 -149.97 -120.63 REMARK 500 1 SER A 57 14.87 58.34 REMARK 500 1 GLN A 58 -72.60 62.54 REMARK 500 1 GLU A 103 84.46 160.62 REMARK 500 1 MET A 105 166.34 -46.93 REMARK 500 1 VAL A 148 -3.20 74.94 REMARK 500 1 LYS A 159 -60.34 -90.33 REMARK 500 1 GLU A 220 31.26 -92.32 REMARK 500 1 GLN A 221 -39.26 -30.87 REMARK 500 1 SER A 224 171.57 67.78 REMARK 500 1 VAL A 238 155.50 -46.89 REMARK 500 1 SER A 239 -86.44 71.55 REMARK 500 1 THR A 241 -19.49 -149.94 REMARK 500 1 GLU A 244 -89.07 59.24 REMARK 500 1 LYS A 252 -73.31 -105.09 REMARK 500 1 TYR A 277 -53.01 -177.44 REMARK 500 1 ARG A 278 25.09 41.16 REMARK 500 1 LEU A 317 -17.52 -49.46 REMARK 500 1 PHE A 318 -70.44 -46.31 REMARK 500 2 ILE A 9 26.12 43.38 REMARK 500 2 LYS A 10 -160.52 63.70 REMARK 500 2 ARG A 14 43.19 -140.88 REMARK 500 2 PHE A 15 75.76 -68.49 REMARK 500 2 GLU A 20 -70.92 69.86 REMARK 500 2 ALA A 31 111.79 -168.47 REMARK 500 2 PHE A 33 177.59 177.34 REMARK 500 2 ALA A 42 157.56 -45.63 REMARK 500 2 SER A 43 -9.67 -44.31 REMARK 500 2 GLN A 53 -157.12 -118.47 REMARK 500 2 GLN A 58 -75.96 62.13 REMARK 500 2 LEU A 74 -73.52 -80.89 REMARK 500 2 TYR A 77 -77.54 -90.47 REMARK 500 2 ILE A 142 16.31 54.73 REMARK 500 2 VAL A 148 -16.18 79.18 REMARK 500 2 GLU A 170 23.72 -78.06 REMARK 500 2 GLU A 220 31.89 -89.10 REMARK 500 2 GLN A 221 -38.22 -35.88 REMARK 500 2 SER A 224 -168.29 72.85 REMARK 500 2 LYS A 237 -88.22 10.16 REMARK 500 2 VAL A 238 100.98 54.60 REMARK 500 2 LYS A 240 -103.86 -143.62 REMARK 500 2 THR A 241 15.89 54.84 REMARK 500 2 GLU A 244 -93.54 63.27 REMARK 500 REMARK 500 THIS ENTRY HAS 711 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30936 RELATED DB: BMRB REMARK 900 ATOMIC-RESOLUTION STRUCTURE OF KINESIN-1 MOTOR DOMAIN IN COMPLEX REMARK 900 WITH POLYMERIC MICROTUBULES BY MAGIC ANGLE SPINNING NMR DBREF 7RIK A 1 349 UNP P33176 KINH_HUMAN 1 349 SEQRES 1 A 349 MET ALA ASP LEU ALA GLU CYS ASN ILE LYS VAL MET CYS SEQRES 2 A 349 ARG PHE ARG PRO LEU ASN GLU SER GLU VAL ASN ARG GLY SEQRES 3 A 349 ASP LYS TYR ILE ALA LYS PHE GLN GLY GLU ASP THR VAL SEQRES 4 A 349 VAL ILE ALA SER LYS PRO TYR ALA PHE ASP ARG VAL PHE SEQRES 5 A 349 GLN SER SER THR SER GLN GLU GLN VAL TYR ASN ASP CYS SEQRES 6 A 349 ALA LYS LYS ILE VAL LYS ASP VAL LEU GLU GLY TYR ASN SEQRES 7 A 349 GLY THR ILE PHE ALA TYR GLY GLN THR SER SER GLY LYS SEQRES 8 A 349 THR HIS THR MET GLU GLY LYS LEU HIS ASP PRO GLU GLY SEQRES 9 A 349 MET GLY ILE ILE PRO ARG ILE VAL GLN ASP ILE PHE ASN SEQRES 10 A 349 TYR ILE TYR SER MET ASP GLU ASN LEU GLU PHE HIS ILE SEQRES 11 A 349 LYS VAL SER TYR PHE GLU ILE TYR LEU ASP LYS ILE ARG SEQRES 12 A 349 ASP LEU LEU ASP VAL SER LYS THR ASN LEU SER VAL HIS SEQRES 13 A 349 GLU ASP LYS ASN ARG VAL PRO TYR VAL LYS GLY CYS THR SEQRES 14 A 349 GLU ARG PHE VAL CYS SER PRO ASP GLU VAL MET ASP THR SEQRES 15 A 349 ILE ASP GLU GLY LYS SER ASN ARG HIS VAL ALA VAL THR SEQRES 16 A 349 ASN MET ASN GLU HIS SER SER ARG SER HIS SER ILE PHE SEQRES 17 A 349 LEU ILE ASN VAL LYS GLN GLU ASN THR GLN THR GLU GLN SEQRES 18 A 349 LYS LEU SER GLY LYS LEU TYR LEU VAL ASP LEU ALA GLY SEQRES 19 A 349 SER GLU LYS VAL SER LYS THR GLY ALA GLU GLY ALA VAL SEQRES 20 A 349 LEU ASP GLU ALA LYS ASN ILE ASN LYS SER LEU SER ALA SEQRES 21 A 349 LEU GLY ASN VAL ILE SER ALA LEU ALA GLU GLY SER THR SEQRES 22 A 349 TYR VAL PRO TYR ARG ASP SER LYS MET THR ARG ILE LEU SEQRES 23 A 349 GLN ASP SER LEU GLY GLY ASN CYS ARG THR THR ILE VAL SEQRES 24 A 349 ILE CYS CYS SER PRO SER SER TYR ASN GLU SER GLU THR SEQRES 25 A 349 LYS SER THR LEU LEU PHE GLY GLN ARG ALA LYS THR ILE SEQRES 26 A 349 LYS ASN THR VAL CYS VAL ASN VAL GLU LEU THR ALA GLU SEQRES 27 A 349 GLN TRP LYS LYS LYS TYR GLU LYS GLU LYS GLU HELIX 1 AA1 GLU A 20 GLY A 26 1 7 HELIX 2 AA2 GLN A 53 SER A 57 5 5 HELIX 3 AA3 GLN A 58 GLU A 75 1 18 HELIX 4 AA4 GLY A 106 SER A 121 1 16 HELIX 5 AA5 SER A 175 GLU A 185 1 11 HELIX 6 AA6 GLY A 186 HIS A 191 1 6 HELIX 7 AA7 GLU A 244 GLY A 271 1 28 HELIX 8 AA8 SER A 280 LEU A 286 1 7 HELIX 9 AA9 ASN A 308 ARG A 321 1 14 SHEET 1 AA1 7 ARG A 50 PHE A 52 0 SHEET 2 AA1 7 MET A 12 ARG A 14 1 N CYS A 13 O PHE A 52 SHEET 3 AA1 7 ARG A 295 ILE A 300 1 O ILE A 300 N ARG A 14 SHEET 4 AA1 7 GLY A 79 TYR A 84 1 N PHE A 82 O VAL A 299 SHEET 5 AA1 7 LYS A 226 LEU A 232 1 O LEU A 232 N ALA A 83 SHEET 6 AA1 7 SER A 206 LYS A 213 -1 N SER A 206 O ASP A 231 SHEET 7 AA1 7 HIS A 129 GLU A 136 -1 N LYS A 131 O ASN A 211 SHEET 1 AA2 2 SER A 154 VAL A 155 0 SHEET 2 AA2 2 PRO A 163 TYR A 164 -1 O TYR A 164 N SER A 154 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1