HEADER VIRAL PROTEIN/INHIBITOR 20-JUL-21 7RJ2 TITLE CO-CRYSTAL STRUCTURE OF LENACAPAVIR BOUND TO Q67H/N74D MUTANT OF TITLE 2 DISULFIDE STABILIZED HIV-1 CA HEXAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, VIRAL PROTEIN, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BESTER,M.KVARATSKHELIA REVDAT 4 18-OCT-23 7RJ2 1 REMARK REVDAT 3 09-NOV-22 7RJ2 1 JRNL HETSYN REVDAT 2 19-OCT-22 7RJ2 1 JRNL REVDAT 1 27-JUL-22 7RJ2 0 JRNL AUTH S.M.BESTER,D.ADU-AMPRATWUM,A.S.ANNAMALAI,G.WEI,L.BRIGANTI, JRNL AUTH 2 B.C.MURPHY,R.HANEY,J.R.FUCHS,M.KVARATSKHELIA JRNL TITL STRUCTURAL AND MECHANISTIC BASES OF VIRAL RESISTANCE TO JRNL TITL 2 HIV-1 CAPSID INHIBITOR LENACAPAVIR. JRNL REF MBIO V. 13 80422 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36190128 JRNL DOI 10.1128/MBIO.01804-22 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9200 - 3.6800 1.00 2961 163 0.1868 0.2229 REMARK 3 2 3.6800 - 2.9200 1.00 2893 173 0.2041 0.2637 REMARK 3 3 2.9200 - 2.5500 1.00 2904 140 0.1945 0.2643 REMARK 3 4 2.5500 - 2.3200 1.00 2891 128 0.2329 0.2676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.227 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1827 REMARK 3 ANGLE : 0.924 2521 REMARK 3 CHIRALITY : 0.047 263 REMARK 3 PLANARITY : 0.006 309 REMARK 3 DIHEDRAL : 16.205 672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0029 -8.0081 33.1898 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1208 REMARK 3 T33: 0.1843 T12: 0.0080 REMARK 3 T13: -0.0026 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.7279 L22: 1.9810 REMARK 3 L33: 3.2617 L12: 0.1409 REMARK 3 L13: -0.1237 L23: 0.5378 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.2784 S13: -0.0357 REMARK 3 S21: 0.2561 S22: -0.1381 S23: -0.0248 REMARK 3 S31: 0.1462 S32: -0.1136 S33: 0.0985 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 146 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4145 -32.2345 9.0305 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.2068 REMARK 3 T33: 0.1797 T12: -0.0453 REMARK 3 T13: 0.0288 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 4.3336 L22: 6.2887 REMARK 3 L33: 2.6161 L12: -1.3826 REMARK 3 L13: 0.6541 L23: 2.5698 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: 0.1951 S13: -0.0108 REMARK 3 S21: 0.1165 S22: -0.0747 S23: 0.2092 REMARK 3 S31: 0.1849 S32: -0.1714 S33: 0.1415 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 196 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4778 -43.3514 10.7909 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.2190 REMARK 3 T33: 0.3321 T12: 0.0212 REMARK 3 T13: 0.0648 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 5.5269 L22: 5.9769 REMARK 3 L33: 5.0165 L12: 0.2948 REMARK 3 L13: 3.8440 L23: 3.6836 REMARK 3 S TENSOR REMARK 3 S11: 0.2932 S12: 0.2451 S13: -0.3016 REMARK 3 S21: 0.2722 S22: -0.1888 S23: -0.4660 REMARK 3 S31: 1.0770 S32: 0.0131 S33: -0.1560 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 46.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.425M NAI, 6% PEG 3350, 6% GLYCEROL, REMARK 280 0.1M SODIUM CACODYLATE TRIHYDRATE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -398.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 531 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 587 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 177 REMARK 465 SER C 178 REMARK 465 GLN C 179 REMARK 465 GLU C 180 REMARK 465 VAL C 181 REMARK 465 LYS C 182 REMARK 465 ASN C 183 REMARK 465 ALA C 184 REMARK 465 ALA C 185 REMARK 465 GLY C 220 REMARK 465 VAL C 221 REMARK 465 GLY C 222 REMARK 465 GLY C 223 REMARK 465 PRO C 224 REMARK 465 GLY C 225 REMARK 465 HIS C 226 REMARK 465 LYS C 227 REMARK 465 ALA C 228 REMARK 465 ARG C 229 REMARK 465 VAL C 230 REMARK 465 LEU C 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 31 -114.27 51.40 REMARK 500 GLU C 35 1.03 -69.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 578 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 579 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH C 580 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH C 581 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH C 582 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH C 583 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH C 584 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH C 585 DISTANCE = 8.75 ANGSTROMS REMARK 525 HOH C 586 DISTANCE = 8.91 ANGSTROMS REMARK 525 HOH C 587 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH C 588 DISTANCE = 9.51 ANGSTROMS REMARK 525 HOH C 589 DISTANCE = 11.48 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RHN RELATED DB: PDB REMARK 900 RELATED ID: 7RHM RELATED DB: PDB REMARK 900 RELATED ID: 7RAR RELATED DB: PDB REMARK 900 RELATED ID: 7RAO RELATED DB: PDB DBREF 7RJ2 C 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 7RJ2 CYS C 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RJ2 CYS C 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RJ2 HIS C 67 UNP B6DRA0 GLN 199 ENGINEERED MUTATION SEQADV 7RJ2 ASP C 74 UNP B6DRA0 ASN 206 ENGINEERED MUTATION SEQADV 7RJ2 ALA C 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RJ2 ALA C 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQRES 1 C 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 C 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 C 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 C 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 C 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 C 231 MET HIS MET LEU LYS GLU THR ILE ASP GLU GLU ALA ALA SEQRES 7 C 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 C 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 C 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 C 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 C 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 C 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 C 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 C 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 C 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 C 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 C 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 C 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET QNG C 301 128 HET CL C 302 1 HET CL C 303 1 HET CL C 304 1 HET CL C 305 1 HET IOD C 306 1 HETNAM QNG N-[(1S)-1-(3-{4-CHLORO-3-[(METHYLSULFONYL)AMINO]-1-(2, HETNAM 2 QNG 2,2-TRIFLUOROETHYL)-1H-INDAZOL-7-YL}-6-[3-METHYL-3- HETNAM 3 QNG (METHYLSULFONYL)BUT-1-YN-1-YL]PYRIDIN-2-YL)-2-(3,5- HETNAM 4 QNG DIFLUOROPHENYL)ETHYL]-2-[(3BS,4AR)-5,5-DIFLUORO-3- HETNAM 5 QNG (TRIFLUOROMETHYL)-3B,4,4A,5-TETRAHYDRO-1H- HETNAM 6 QNG CYCLOPROPA[3,4]CYCLOPENTA[1,2-C]PYRAZOL-1-YL]ACETAMIDE HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETSYN QNG LENACAPAVIR FORMUL 2 QNG C39 H32 CL F10 N7 O5 S2 FORMUL 3 CL 4(CL 1-) FORMUL 7 IOD I 1- FORMUL 8 HOH *189(H2 O) HELIX 1 AA1 SER C 16 ALA C 31 1 16 HELIX 2 AA2 GLU C 35 SER C 44 1 10 HELIX 3 AA3 THR C 48 VAL C 59 1 12 HELIX 4 AA4 HIS C 62 HIS C 84 1 23 HELIX 5 AA5 ARG C 100 ALA C 105 1 6 HELIX 6 AA6 THR C 110 THR C 119 1 10 HELIX 7 AA7 PRO C 125 SER C 146 1 22 HELIX 8 AA8 SER C 149 ILE C 153 5 5 HELIX 9 AA9 PRO C 160 GLN C 176 1 17 HELIX 10 AB1 GLU C 187 ASN C 193 1 7 HELIX 11 AB2 ASN C 195 GLY C 206 1 12 HELIX 12 AB3 THR C 210 CYS C 218 1 9 SHEET 1 AA1 2 ILE C 2 GLN C 4 0 SHEET 2 AA1 2 MET C 10 HIS C 12 -1 O VAL C 11 N VAL C 3 SSBOND 1 CYS C 14 CYS C 45 1555 5555 2.03 SSBOND 2 CYS C 198 CYS C 218 1555 1555 2.04 CISPEP 1 ASN C 121 PRO C 122 0 -0.91 CRYST1 92.183 92.183 57.965 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010848 0.006263 0.000000 0.00000 SCALE2 0.000000 0.012526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017252 0.00000