HEADER PEPTIDE BINDING PROTEIN 21-JUL-21 7RJJ TITLE CRYSTAL STRUCTURE OF THE PEPTIDOGLYCAN BINDING DOMAIN OF THE OUTER TITLE 2 MEMBRANE PROTEIN (OMPA) FROM KLEBSIELLA PNEUMONIAE WITH BOUND D- TITLE 3 ALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMPA FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 72407; SOURCE 4 GENE: C4Z38_016670, EJ893_12145, I5002_15200, JMY88_11465; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, OUTER MEMBRANE PROTEIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.DUBROVSKA,K.J.F.SATCHELL,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 14-JUN-23 7RJJ 1 JRNL REVDAT 1 28-JUL-21 7RJJ 0 JRNL AUTH N.L.INNISS,T.J.KOCHAN,G.MINASOV,Z.WAWRZAK,C.CHANG,K.TAN, JRNL AUTH 2 L.SHUVALOVA,O.KIRYUKHINA,S.PSHENYCHNYI,R.WU,I.DUBROVSKA, JRNL AUTH 3 G.BABNIGG,M.ENDRES,W.F.ANDERSON,A.R.HAUSER,A.JOACHIMIAK, JRNL AUTH 4 K.J.F.SATCHELL JRNL TITL A STRUCTURAL SYSTEMS BIOLOGY APPROACH TO HIGH-RISK CG23 JRNL TITL 2 KLEBSIELLA PNEUMONIAE. JRNL REF MICROBIOL RESOUR ANNOUNC V. 12 01322 2023 JRNL REFN ISSN 2576-098X JRNL PMID 36695589 JRNL DOI 10.1128/MRA.01013-22 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 19054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 37.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.379 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1919 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1859 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2602 ; 1.442 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4286 ; 0.361 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 3.497 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;21.663 ;20.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;10.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.303 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2160 ; 0.054 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 424 ; 0.048 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 428 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6920 8.1900 -13.8350 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.0627 REMARK 3 T33: 0.0975 T12: -0.0005 REMARK 3 T13: 0.0244 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 1.9179 L22: 4.0068 REMARK 3 L33: 3.7563 L12: -0.7109 REMARK 3 L13: 0.5496 L23: -0.1282 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: 0.3095 S13: 0.2152 REMARK 3 S21: -0.6018 S22: -0.0071 S23: -0.0546 REMARK 3 S31: -0.2351 S32: -0.0345 S33: -0.0416 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 465 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1300 8.9480 -1.6110 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.0766 REMARK 3 T33: 0.1101 T12: 0.0368 REMARK 3 T13: 0.0330 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 5.2685 L22: 9.0134 REMARK 3 L33: 1.7181 L12: -5.1188 REMARK 3 L13: -1.1634 L23: 2.5470 REMARK 3 S TENSOR REMARK 3 S11: -0.1522 S12: -0.1049 S13: -0.0408 REMARK 3 S21: 0.2342 S22: 0.0570 S23: 0.2839 REMARK 3 S31: -0.0026 S32: -0.2241 S33: 0.0952 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 488 A 518 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8840 2.5850 -7.5420 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.1100 REMARK 3 T33: 0.0921 T12: 0.0017 REMARK 3 T13: 0.0115 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 1.7760 L22: 5.0759 REMARK 3 L33: 3.6729 L12: -0.0472 REMARK 3 L13: 0.4714 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.0781 S13: 0.0860 REMARK 3 S21: -0.1082 S22: 0.1212 S23: 0.2081 REMARK 3 S31: 0.1953 S32: -0.4666 S33: -0.0984 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 519 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1830 13.5630 -5.8350 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.0287 REMARK 3 T33: 0.1439 T12: 0.0341 REMARK 3 T13: 0.0477 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.1624 L22: 8.3298 REMARK 3 L33: 1.4937 L12: -1.8768 REMARK 3 L13: 0.6679 L23: 1.1238 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: -0.0656 S13: 0.3305 REMARK 3 S21: -0.2449 S22: 0.1979 S23: -0.3512 REMARK 3 S31: -0.1697 S32: -0.0104 S33: -0.0391 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 428 B 463 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2100 -8.5570 12.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.0656 REMARK 3 T33: 0.1089 T12: 0.0032 REMARK 3 T13: -0.0223 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 2.8638 L22: 4.0973 REMARK 3 L33: 3.6857 L12: 1.4252 REMARK 3 L13: -0.8593 L23: -0.8228 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: -0.3488 S13: -0.2932 REMARK 3 S21: 0.5767 S22: -0.0211 S23: -0.0137 REMARK 3 S31: 0.2928 S32: -0.1190 S33: -0.0493 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 464 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6210 -8.0780 1.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.0691 REMARK 3 T33: 0.0994 T12: -0.0404 REMARK 3 T13: -0.0159 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 4.1651 L22: 8.1777 REMARK 3 L33: 1.2699 L12: 4.0249 REMARK 3 L13: 0.6169 L23: 1.8079 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.0353 S13: -0.0204 REMARK 3 S21: -0.1604 S22: 0.0644 S23: 0.1150 REMARK 3 S31: 0.0331 S32: -0.1801 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 487 B 518 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1400 -2.9740 6.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.1162 REMARK 3 T33: 0.1037 T12: 0.0034 REMARK 3 T13: -0.0162 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 1.7280 L22: 5.2298 REMARK 3 L33: 4.4595 L12: 0.1886 REMARK 3 L13: -0.6048 L23: 0.5073 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0990 S13: -0.1030 REMARK 3 S21: 0.0932 S22: 0.0823 S23: 0.1833 REMARK 3 S31: -0.1389 S32: -0.5156 S33: -0.0838 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 519 B 547 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1660 -13.5570 4.5470 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.0391 REMARK 3 T33: 0.1418 T12: -0.0361 REMARK 3 T13: -0.0422 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 3.0723 L22: 8.9929 REMARK 3 L33: 1.4018 L12: 1.8726 REMARK 3 L13: -0.5648 L23: 1.1098 REMARK 3 S TENSOR REMARK 3 S11: -0.1835 S12: 0.0965 S13: -0.3518 REMARK 3 S21: 0.1898 S22: 0.2565 S23: -0.3917 REMARK 3 S31: 0.1223 S32: -0.0129 S33: -0.0731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7RJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 1.35800 REMARK 200 R SYM FOR SHELL (I) : 1.35800 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 9.4 MG/ML, 0.15M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS PH 8.3; SCREEN: PEG'S II (C4), 0.2M REMARK 280 MAGNESIUM CHLORIDE, 0.1M MES PH 6.5, 10% (W/V) PEG4000; CRYO: REMARK 280 0.2M MAGNESIUM CHLORIDE, 0.1M MES PH 6.5, 25% (W/V) PEG4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.31133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 178.62267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.96700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 223.27833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.65567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 425 REMARK 465 ASN A 426 REMARK 465 ALA A 427 REMARK 465 ARG A 548 REMARK 465 LEU A 549 REMARK 465 PRO A 550 REMARK 465 ASP A 551 REMARK 465 SER B 425 REMARK 465 ASN B 426 REMARK 465 ALA B 427 REMARK 465 ARG B 548 REMARK 465 LEU B 549 REMARK 465 PRO B 550 REMARK 465 ASP B 551 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 459 CG - SE - CE ANGL. DEV. = 15.3 DEGREES REMARK 500 MSE B 459 CG - SE - CE ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 546 -21.05 -145.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97598 RELATED DB: TARGETTRACK DBREF1 7RJJ A 427 551 UNP A0A422WJQ0_KLEPN DBREF2 7RJJ A A0A422WJQ0 427 551 DBREF1 7RJJ B 427 551 UNP A0A422WJQ0_KLEPN DBREF2 7RJJ B A0A422WJQ0 427 551 SEQADV 7RJJ SER A 425 UNP A0A422WJQ EXPRESSION TAG SEQADV 7RJJ ASN A 426 UNP A0A422WJQ EXPRESSION TAG SEQADV 7RJJ SER B 425 UNP A0A422WJQ EXPRESSION TAG SEQADV 7RJJ ASN B 426 UNP A0A422WJQ EXPRESSION TAG SEQRES 1 A 127 SER ASN ALA PRO ASP VAL ILE ARG LEU ASP SER MSE SER SEQRES 2 A 127 LEU PHE ASP THR GLY LYS TRP VAL LEU LYS PRO GLY SER SEQRES 3 A 127 THR LYS ARG LEU VAL SER SER LEU MSE ASP ILE LYS ALA SEQRES 4 A 127 ARG PRO GLY TRP LEU ILE VAL VAL ALA GLY HIS THR ASP SEQRES 5 A 127 SER VAL GLY GLU GLU LYS ALA ASN GLN LEU LEU SER LEU SEQRES 6 A 127 LYS ARG ALA GLU SER VAL ARG ASP TRP MSE ARG ASP THR SEQRES 7 A 127 GLY ASP VAL PRO ASP SER CYS PHE ALA VAL GLN GLY TYR SEQRES 8 A 127 GLY GLU SER ARG PRO ILE ALA THR ASN ASP THR PRO GLU SEQRES 9 A 127 GLY ARG ALA LEU ASN ARG ARG VAL GLU ILE SER LEU VAL SEQRES 10 A 127 PRO GLN VAL ASP ALA CYS ARG LEU PRO ASP SEQRES 1 B 127 SER ASN ALA PRO ASP VAL ILE ARG LEU ASP SER MSE SER SEQRES 2 B 127 LEU PHE ASP THR GLY LYS TRP VAL LEU LYS PRO GLY SER SEQRES 3 B 127 THR LYS ARG LEU VAL SER SER LEU MSE ASP ILE LYS ALA SEQRES 4 B 127 ARG PRO GLY TRP LEU ILE VAL VAL ALA GLY HIS THR ASP SEQRES 5 B 127 SER VAL GLY GLU GLU LYS ALA ASN GLN LEU LEU SER LEU SEQRES 6 B 127 LYS ARG ALA GLU SER VAL ARG ASP TRP MSE ARG ASP THR SEQRES 7 B 127 GLY ASP VAL PRO ASP SER CYS PHE ALA VAL GLN GLY TYR SEQRES 8 B 127 GLY GLU SER ARG PRO ILE ALA THR ASN ASP THR PRO GLU SEQRES 9 B 127 GLY ARG ALA LEU ASN ARG ARG VAL GLU ILE SER LEU VAL SEQRES 10 B 127 PRO GLN VAL ASP ALA CYS ARG LEU PRO ASP MODRES 7RJJ MSE A 436 MET MODIFIED RESIDUE MODRES 7RJJ MSE A 459 MET MODIFIED RESIDUE MODRES 7RJJ MSE A 499 MET MODIFIED RESIDUE MODRES 7RJJ MSE B 436 MET MODIFIED RESIDUE MODRES 7RJJ MSE B 459 MET MODIFIED RESIDUE MODRES 7RJJ MSE B 499 MET MODIFIED RESIDUE HET MSE A 436 8 HET MSE A 459 16 HET MSE A 499 8 HET MSE B 436 8 HET MSE B 459 16 HET MSE B 499 8 HET DAL A 601 6 HET CL A 602 1 HET DAL B 601 6 HET CL B 602 1 HETNAM MSE SELENOMETHIONINE HETNAM DAL D-ALANINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *177(H2 O) HELIX 1 AA1 SER A 450 ALA A 463 1 14 HELIX 2 AA2 GLU A 480 THR A 502 1 23 HELIX 3 AA3 PRO A 506 SER A 508 5 3 HELIX 4 AA4 THR A 526 ARG A 534 1 9 HELIX 5 AA5 SER B 450 ALA B 463 1 14 HELIX 6 AA6 GLU B 480 THR B 502 1 23 HELIX 7 AA7 PRO B 506 SER B 508 5 3 HELIX 8 AA8 THR B 526 ARG B 534 1 9 SHEET 1 AA1 4 ILE A 431 ARG A 432 0 SHEET 2 AA1 4 VAL A 536 ASP A 545 -1 O LEU A 540 N ILE A 431 SHEET 3 AA1 4 TRP A 467 GLY A 473 -1 N VAL A 470 O SER A 539 SHEET 4 AA1 4 PHE A 510 GLY A 514 1 O ALA A 511 N VAL A 471 SHEET 1 AA2 4 ILE B 431 ARG B 432 0 SHEET 2 AA2 4 ARG B 535 ASP B 545 -1 O LEU B 540 N ILE B 431 SHEET 3 AA2 4 TRP B 467 HIS B 474 -1 N VAL B 470 O SER B 539 SHEET 4 AA2 4 PHE B 510 GLY B 514 1 O ALA B 511 N VAL B 471 SSBOND 1 CYS A 509 CYS A 547 1555 1555 2.04 SSBOND 2 CYS B 509 CYS B 547 1555 1555 2.05 LINK C SER A 435 N MSE A 436 1555 1555 1.34 LINK C MSE A 436 N SER A 437 1555 1555 1.34 LINK C LEU A 458 N AMSE A 459 1555 1555 1.34 LINK C LEU A 458 N BMSE A 459 1555 1555 1.34 LINK C AMSE A 459 N ASP A 460 1555 1555 1.34 LINK C BMSE A 459 N ASP A 460 1555 1555 1.34 LINK C TRP A 498 N MSE A 499 1555 1555 1.34 LINK C MSE A 499 N ARG A 500 1555 1555 1.33 LINK C SER B 435 N MSE B 436 1555 1555 1.34 LINK C MSE B 436 N SER B 437 1555 1555 1.34 LINK C LEU B 458 N AMSE B 459 1555 1555 1.34 LINK C LEU B 458 N BMSE B 459 1555 1555 1.34 LINK C AMSE B 459 N ASP B 460 1555 1555 1.34 LINK C BMSE B 459 N ASP B 460 1555 1555 1.34 LINK C TRP B 498 N MSE B 499 1555 1555 1.34 LINK C MSE B 499 N ARG B 500 1555 1555 1.33 CRYST1 41.887 41.887 267.934 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023874 0.013784 0.000000 0.00000 SCALE2 0.000000 0.027567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003732 0.00000